Wall clock time and date at job start Mon Mar 30 2020 02:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.27939 * 1 3 3 Si 1.86800 * 120.00084 * 2 1 4 4 H 1.48499 * 109.47016 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47324 * 239.99422 * 3 2 1 6 6 H 1.48500 * 109.47129 * 119.99638 * 3 2 1 7 7 C 1.50706 * 120.00113 * 179.97438 * 2 1 3 8 8 C 1.52059 * 109.33274 * 95.83278 * 7 2 1 9 9 C 1.48188 * 114.91694 * 155.23964 * 8 7 2 10 10 C 1.55447 * 108.91823 * 62.59430 * 9 8 7 11 11 N 1.40353 * 110.30084 * 288.36030 * 10 9 8 12 12 C 1.44661 * 124.32109 * 255.85826 * 11 10 9 13 13 C 1.54797 * 105.94195 * 172.18120 * 12 11 10 14 14 C 1.54933 * 105.22922 * 358.58804 * 13 12 11 15 15 C 1.45955 * 124.16052 * 90.85081 * 11 10 9 16 16 H 1.08999 * 110.25159 * 83.10878 * 15 11 10 17 17 C 1.51358 * 109.33265 * 335.00768 * 7 2 1 18 18 H 1.09003 * 109.47254 * 330.30007 * 17 7 2 19 19 N 1.46899 * 109.47589 * 90.31490 * 17 7 2 20 20 H 0.97002 * 119.99997 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.33643 * 215.33661 * 7 2 1 22 22 H 1.08997 * 108.39479 * 276.64897 * 8 7 2 23 23 H 1.09002 * 108.39297 * 33.82743 * 8 7 2 24 24 H 1.09004 * 109.56208 * 302.77000 * 9 8 7 25 25 H 1.08994 * 109.65676 * 182.48522 * 9 8 7 26 26 H 1.09001 * 109.33354 * 168.10506 * 10 9 8 27 27 H 1.08998 * 109.33145 * 48.61416 * 10 9 8 28 28 H 1.09003 * 110.15204 * 291.29792 * 12 11 10 29 29 H 1.09000 * 110.16254 * 53.05822 * 12 11 10 30 30 H 1.09004 * 110.29259 * 117.52664 * 13 12 11 31 31 H 1.08999 * 110.29299 * 239.65203 * 13 12 11 32 32 H 1.08995 * 110.61939 * 262.74885 * 14 13 12 33 33 H 1.08996 * 110.62098 * 139.74312 * 14 13 12 34 34 H 1.00894 * 111.00235 * 174.93021 * 19 17 7 35 35 H 1.00908 * 110.99657 * 298.87571 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2794 0.0000 0.0000 3 14 2.2134 1.6177 0.0000 4 1 1.2484 2.7464 -0.0006 5 1 3.0673 1.6964 -1.2124 6 1 3.0671 1.6964 1.2125 7 6 2.0329 -1.3051 0.0006 8 6 2.4109 -1.6688 -1.4267 9 6 3.5913 -2.5558 -1.5532 10 6 3.2784 -3.9127 -0.8625 11 7 3.2524 -3.7548 0.5318 12 6 4.3096 -4.1837 1.4212 13 6 3.9406 -3.6296 2.8187 14 6 2.6246 -2.8394 2.6087 15 6 2.0524 -3.4332 1.2979 16 1 1.4803 -4.3386 1.5008 17 6 1.1624 -2.3861 0.6045 18 1 0.4866 -1.9422 1.3355 19 7 0.3796 -3.0341 -0.4563 20 1 -0.4850 -0.8401 -0.0004 21 1 2.9400 -1.1979 0.5954 22 1 1.5584 -2.1623 -1.8932 23 1 2.6121 -0.7481 -1.9744 24 1 4.4509 -2.0904 -1.0708 25 1 3.8115 -2.7249 -2.6072 26 1 4.0464 -4.6389 -1.1291 27 1 2.3086 -4.2756 -1.2028 28 1 4.3580 -5.2723 1.4495 29 1 5.2650 -3.7731 1.0946 30 1 3.7819 -4.4486 3.5203 31 1 4.7258 -2.9665 3.1818 32 1 2.8303 -1.7756 2.4905 33 1 1.9385 -3.0089 3.4385 34 1 -0.1476 -3.8134 -0.0919 35 1 -0.2265 -2.3705 -0.9150 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261310718.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:36 Heat of formation + Delta-G solvation = 33.274987 kcal Electronic energy + Delta-G solvation = -15712.709829 eV Core-core repulsion = 13439.495554 eV Total energy + Delta-G solvation = -2273.214275 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.151 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.45913 -38.31879 -35.57578 -34.60751 -32.35044 -30.40614 -29.00328 -25.73661 -24.65763 -22.61599 -22.05553 -20.83113 -19.60536 -17.93923 -17.71627 -16.51970 -16.06874 -15.96847 -15.69080 -15.51037 -14.73894 -14.42624 -14.20016 -13.88163 -13.33007 -13.18353 -12.78662 -12.67096 -12.35495 -12.25979 -12.08199 -11.95150 -11.89823 -11.56525 -11.49730 -11.20149 -11.09293 -10.01454 -9.69929 -8.40478 0.90304 1.24746 1.63146 1.85907 1.96547 2.83502 3.28561 3.50474 3.79964 3.82238 3.90246 4.01257 4.06555 4.24156 4.33931 4.40406 4.47613 4.55967 4.59408 4.75539 4.85600 4.93084 4.97215 4.98233 4.99467 5.13300 5.23324 5.26608 5.28249 5.37075 5.43888 5.68492 5.97085 6.26064 6.60576 6.88555 7.16053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.638 5.638 2 C -0.028 4.028 3 Si 1.062 2.938 4 H -0.247 1.247 5 H -0.246 1.246 6 H -0.248 1.248 7 C -0.103 4.103 8 C -0.100 4.100 9 C -0.132 4.132 10 C 0.155 3.845 11 N -0.682 5.682 12 C 0.126 3.874 13 C -0.131 4.131 14 C -0.132 4.132 15 C 0.163 3.837 16 H 0.048 0.952 17 C 0.087 3.913 18 H 0.044 0.956 19 N -0.838 5.838 20 H 0.314 0.686 21 H 0.098 0.902 22 H 0.085 0.915 23 H 0.048 0.952 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.048 0.952 27 H 0.071 0.929 28 H 0.035 0.965 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.342 0.658 35 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.263 -0.900 0.957 1.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.252 5.252 2 C -0.273 4.273 3 Si 0.875 3.125 4 H -0.170 1.170 5 H -0.169 1.169 6 H -0.171 1.171 7 C -0.125 4.125 8 C -0.139 4.139 9 C -0.172 4.172 10 C 0.028 3.972 11 N -0.410 5.410 12 C 0.001 3.999 13 C -0.169 4.169 14 C -0.170 4.170 15 C 0.057 3.943 16 H 0.066 0.934 17 C -0.025 4.025 18 H 0.061 0.939 19 N -0.371 5.371 20 H 0.134 0.866 21 H 0.116 0.884 22 H 0.103 0.897 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.155 0.845 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.659 0.528 0.535 1.821 hybrid contribution -1.022 -1.665 0.607 2.046 sum 0.637 -1.137 1.143 1.734 Atomic orbital electron populations 1.69551 1.09431 1.36355 1.09854 1.31912 0.96336 1.07672 0.91414 0.83616 0.76756 0.70810 0.81295 1.17029 1.16938 1.17131 1.20924 0.99900 0.92216 0.99434 1.20266 1.00351 0.99348 0.93967 1.21578 0.97586 0.97855 1.00131 1.20218 1.01305 0.94717 0.80920 1.47199 1.11270 1.79458 1.03121 1.21332 0.91820 0.97181 0.89596 1.22565 0.97552 0.99869 0.96913 1.22739 0.97045 1.00403 0.96845 1.21347 0.87864 0.94908 0.90201 0.93389 1.21473 0.94590 0.94476 0.91975 0.93862 1.59025 1.32414 1.13841 1.31785 0.86641 0.88429 0.89662 0.93335 0.92463 0.91757 0.93382 0.91097 0.94741 0.92405 0.91327 0.90915 0.90732 0.91054 0.84454 0.84730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.64 -1.09 13.13 56.23 0.74 -0.35 16 2 C -0.03 -0.01 4.63 -13.90 -0.06 -0.08 16 3 Si 1.06 -0.23 29.38 -169.99 -4.99 -5.22 16 4 H -0.25 -0.32 7.11 56.52 0.40 0.08 16 5 H -0.25 0.06 7.11 56.52 0.40 0.47 16 6 H -0.25 0.11 7.11 56.52 0.40 0.51 16 7 C -0.10 0.01 1.42 -93.08 -0.13 -0.13 16 8 C -0.10 -0.02 4.45 -29.55 -0.13 -0.15 16 9 C -0.13 -0.02 5.95 -27.77 -0.17 -0.18 16 10 C 0.15 0.07 5.76 -5.91 -0.03 0.04 16 11 N -0.68 -0.19 2.45 -229.77 -0.56 -0.76 16 12 C 0.13 -0.02 7.15 -4.08 -0.03 -0.05 16 13 C -0.13 0.13 6.98 -24.76 -0.17 -0.04 16 14 C -0.13 0.11 6.24 -24.73 -0.15 -0.05 16 15 C 0.16 -0.03 3.04 -66.76 -0.20 -0.23 16 16 H 0.05 0.02 8.06 -51.93 -0.42 -0.40 16 17 C 0.09 -0.05 1.83 -68.06 -0.12 -0.17 16 18 H 0.04 0.00 6.96 -51.93 -0.36 -0.37 16 19 N -0.84 1.03 5.82 -4.96 -0.03 1.00 16 20 H 0.31 0.19 5.24 -40.82 -0.21 -0.02 16 21 H 0.10 0.02 5.96 -51.93 -0.31 -0.29 16 22 H 0.09 0.07 5.82 -51.93 -0.30 -0.24 16 23 H 0.05 0.01 7.31 -51.93 -0.38 -0.37 16 24 H 0.06 0.03 8.14 -51.93 -0.42 -0.39 16 25 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 26 H 0.05 0.03 8.02 -51.93 -0.42 -0.39 16 27 H 0.07 0.09 6.75 -51.93 -0.35 -0.26 16 28 H 0.03 0.01 8.14 -51.93 -0.42 -0.42 16 29 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 30 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 31 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 32 H 0.07 -0.05 6.72 -51.93 -0.35 -0.39 16 33 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 34 H 0.34 -0.70 8.92 -39.29 -0.35 -1.05 16 35 H 0.34 -0.45 6.91 -39.29 -0.27 -0.72 16 LS Contribution 253.21 15.07 3.82 3.82 Total: 0.00 -1.50 253.21 -7.72 -9.22 By element: Atomic # 1 Polarization: -1.18 SS G_CDS: -5.48 Total: -6.66 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -1.21 Total: -1.05 kcal Atomic # 7 Polarization: -0.25 SS G_CDS: 0.15 Total: -0.11 kcal Atomic # 14 Polarization: -0.23 SS G_CDS: -4.99 Total: -5.22 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -1.50 -7.72 -9.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261310718.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.493 kcal (2) G-P(sol) polarization free energy of solvation -1.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds