Wall clock time and date at job start Mon Mar 30 2020 02:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.27939 * 1 3 3 Si 1.86800 * 120.00084 * 2 1 4 4 H 1.48499 * 109.47016 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47324 * 239.99422 * 3 2 1 6 6 H 1.48500 * 109.47129 * 119.99638 * 3 2 1 7 7 C 1.50706 * 120.00113 * 179.97438 * 2 1 3 8 8 C 1.52059 * 109.33274 * 95.83278 * 7 2 1 9 9 C 1.48188 * 114.91694 * 155.23964 * 8 7 2 10 10 C 1.55447 * 108.91823 * 62.59430 * 9 8 7 11 11 N 1.40353 * 110.30084 * 288.36030 * 10 9 8 12 12 C 1.44661 * 124.32109 * 255.85826 * 11 10 9 13 13 C 1.54797 * 105.94195 * 172.18120 * 12 11 10 14 14 C 1.54933 * 105.22922 * 358.58804 * 13 12 11 15 15 C 1.45955 * 124.16052 * 90.85081 * 11 10 9 16 16 H 1.08999 * 110.25159 * 83.10878 * 15 11 10 17 17 C 1.51358 * 109.33265 * 335.00768 * 7 2 1 18 18 H 1.09003 * 109.47254 * 330.30007 * 17 7 2 19 19 N 1.46899 * 109.47589 * 90.31490 * 17 7 2 20 20 H 0.97002 * 119.99997 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.33643 * 215.33661 * 7 2 1 22 22 H 1.08997 * 108.39479 * 276.64897 * 8 7 2 23 23 H 1.09002 * 108.39297 * 33.82743 * 8 7 2 24 24 H 1.09004 * 109.56208 * 302.77000 * 9 8 7 25 25 H 1.08994 * 109.65676 * 182.48522 * 9 8 7 26 26 H 1.09001 * 109.33354 * 168.10506 * 10 9 8 27 27 H 1.08998 * 109.33145 * 48.61416 * 10 9 8 28 28 H 1.09003 * 110.15204 * 291.29792 * 12 11 10 29 29 H 1.09000 * 110.16254 * 53.05822 * 12 11 10 30 30 H 1.09004 * 110.29259 * 117.52664 * 13 12 11 31 31 H 1.08999 * 110.29299 * 239.65203 * 13 12 11 32 32 H 1.08995 * 110.61939 * 262.74885 * 14 13 12 33 33 H 1.08996 * 110.62098 * 139.74312 * 14 13 12 34 34 H 1.00894 * 111.00235 * 174.93021 * 19 17 7 35 35 H 1.00908 * 110.99657 * 298.87571 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2794 0.0000 0.0000 3 14 2.2134 1.6177 0.0000 4 1 1.2484 2.7464 -0.0006 5 1 3.0673 1.6964 -1.2124 6 1 3.0671 1.6964 1.2125 7 6 2.0329 -1.3051 0.0006 8 6 2.4109 -1.6688 -1.4267 9 6 3.5913 -2.5558 -1.5532 10 6 3.2784 -3.9127 -0.8625 11 7 3.2524 -3.7548 0.5318 12 6 4.3096 -4.1837 1.4212 13 6 3.9406 -3.6296 2.8187 14 6 2.6246 -2.8394 2.6087 15 6 2.0524 -3.4332 1.2979 16 1 1.4803 -4.3386 1.5008 17 6 1.1624 -2.3861 0.6045 18 1 0.4866 -1.9422 1.3355 19 7 0.3796 -3.0341 -0.4563 20 1 -0.4850 -0.8401 -0.0004 21 1 2.9400 -1.1979 0.5954 22 1 1.5584 -2.1623 -1.8932 23 1 2.6121 -0.7481 -1.9744 24 1 4.4509 -2.0904 -1.0708 25 1 3.8115 -2.7249 -2.6072 26 1 4.0464 -4.6389 -1.1291 27 1 2.3086 -4.2756 -1.2028 28 1 4.3580 -5.2723 1.4495 29 1 5.2650 -3.7731 1.0946 30 1 3.7819 -4.4486 3.5203 31 1 4.7258 -2.9665 3.1818 32 1 2.8303 -1.7756 2.4905 33 1 1.9385 -3.0089 3.4385 34 1 -0.1476 -3.8134 -0.0919 35 1 -0.2265 -2.3705 -0.9150 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261310718.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:36 Heat of formation + Delta-G solvation = 41.112898 kcal Electronic energy + Delta-G solvation = -15712.369952 eV Core-core repulsion = 13439.495554 eV Total energy + Delta-G solvation = -2272.874397 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 211.151 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.45656 -38.32523 -35.59431 -34.60385 -32.34406 -30.36602 -29.00813 -25.75284 -24.64235 -22.63780 -22.02314 -20.84725 -19.61596 -17.93383 -17.71851 -16.50214 -16.04634 -15.95409 -15.68432 -15.51321 -14.73620 -14.41430 -14.20072 -13.88986 -13.32259 -13.17073 -12.77382 -12.67554 -12.36296 -12.23365 -12.09714 -11.94164 -11.88793 -11.57716 -11.46883 -11.21341 -11.13042 -10.05990 -9.63950 -8.42346 0.86856 1.23823 1.63122 1.86313 1.96126 2.83980 3.35009 3.50759 3.80800 3.84880 3.94626 4.03525 4.08500 4.26670 4.31410 4.40194 4.49052 4.55265 4.64170 4.74323 4.85843 4.93787 4.96312 5.03733 5.04844 5.12928 5.22958 5.25827 5.28698 5.39853 5.41533 5.65028 6.04027 6.36961 6.60601 6.85393 7.14231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.659 5.659 2 C -0.027 4.027 3 Si 1.085 2.915 4 H -0.271 1.271 5 H -0.243 1.243 6 H -0.240 1.240 7 C -0.101 4.101 8 C -0.099 4.099 9 C -0.128 4.128 10 C 0.157 3.843 11 N -0.685 5.685 12 C 0.123 3.877 13 C -0.127 4.127 14 C -0.131 4.131 15 C 0.162 3.838 16 H 0.041 0.959 17 C 0.092 3.908 18 H 0.040 0.960 19 N -0.838 5.838 20 H 0.318 0.682 21 H 0.098 0.902 22 H 0.080 0.920 23 H 0.048 0.952 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.046 0.954 27 H 0.063 0.937 28 H 0.029 0.971 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.346 0.654 35 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.630 -0.882 1.169 2.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.273 5.273 2 C -0.271 4.271 3 Si 0.899 3.101 4 H -0.195 1.195 5 H -0.166 1.166 6 H -0.163 1.163 7 C -0.122 4.122 8 C -0.138 4.138 9 C -0.167 4.167 10 C 0.030 3.970 11 N -0.414 5.414 12 C -0.001 4.001 13 C -0.165 4.165 14 C -0.169 4.169 15 C 0.056 3.944 16 H 0.059 0.941 17 C -0.020 4.020 18 H 0.058 0.942 19 N -0.371 5.371 20 H 0.137 0.863 21 H 0.116 0.884 22 H 0.098 0.902 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.161 0.839 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.031 0.529 0.750 2.229 hybrid contribution -1.149 -1.684 0.528 2.106 sum 0.882 -1.155 1.278 1.935 Atomic orbital electron populations 1.69562 1.10030 1.36846 1.10910 1.32143 0.96147 1.08352 0.90471 0.83312 0.75950 0.69212 0.81671 1.19512 1.16593 1.16343 1.20899 0.99886 0.92121 0.99315 1.20247 1.00167 0.99309 0.94050 1.21539 0.97375 0.97547 1.00276 1.20170 1.00784 0.94853 0.81172 1.47276 1.11547 1.79446 1.03111 1.21364 0.91783 0.96912 0.90091 1.22551 0.97593 1.00017 0.96385 1.22743 0.97235 1.00326 0.96635 1.21352 0.87741 0.94725 0.90565 0.94108 1.21385 0.94447 0.94244 0.91937 0.94235 1.59007 1.32558 1.13965 1.31598 0.86252 0.88365 0.90186 0.93286 0.92692 0.91409 0.93556 0.91890 0.95290 0.92322 0.91017 0.90290 0.90759 0.90489 0.83922 0.84627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -2.48 13.13 24.11 0.32 -2.16 16 2 C -0.03 -0.03 4.63 88.68 0.41 0.38 16 3 Si 1.08 -0.57 29.38 68.60 2.02 1.45 16 4 H -0.27 -0.91 7.11 99.48 0.71 -0.20 16 5 H -0.24 0.26 7.11 99.48 0.71 0.96 16 6 H -0.24 0.41 7.11 99.48 0.71 1.12 16 7 C -0.10 0.01 1.42 -12.38 -0.02 0.00 16 8 C -0.10 -0.04 4.45 28.77 0.13 0.08 16 9 C -0.13 -0.03 5.95 29.92 0.18 0.15 16 10 C 0.16 0.18 5.76 88.33 0.51 0.69 16 11 N -0.68 -0.45 2.45 -880.85 -2.16 -2.61 16 12 C 0.12 -0.04 7.15 87.34 0.62 0.59 16 13 C -0.13 0.31 6.98 31.87 0.22 0.53 16 14 C -0.13 0.25 6.24 31.89 0.20 0.45 16 15 C 0.16 -0.05 3.04 46.04 0.14 0.09 16 16 H 0.04 0.05 8.06 -2.39 -0.02 0.03 16 17 C 0.09 -0.09 1.83 44.69 0.08 0.00 16 18 H 0.04 0.00 6.96 -2.39 -0.02 -0.02 16 19 N -0.84 1.77 5.82 -169.61 -0.99 0.78 16 20 H 0.32 0.53 5.24 -92.71 -0.49 0.04 16 21 H 0.10 -0.01 5.96 -2.39 -0.01 -0.02 16 22 H 0.08 0.14 5.82 -2.39 -0.01 0.12 16 23 H 0.05 0.02 7.31 -2.39 -0.02 0.00 16 24 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 25 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 26 H 0.05 0.06 8.02 -2.39 -0.02 0.04 16 27 H 0.06 0.18 6.75 -2.39 -0.02 0.16 16 28 H 0.03 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 30 H 0.07 -0.21 8.14 -2.38 -0.02 -0.23 16 31 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 32 H 0.07 -0.13 6.72 -2.39 -0.02 -0.14 16 33 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 34 H 0.35 -1.30 8.92 -89.70 -0.80 -2.10 16 35 H 0.34 -0.77 6.91 -89.69 -0.62 -1.39 16 Total: 0.00 -3.43 253.21 1.61 -1.82 By element: Atomic # 1 Polarization: -2.18 SS G_CDS: -0.05 Total: -2.23 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 2.48 Total: 2.96 kcal Atomic # 7 Polarization: -1.16 SS G_CDS: -2.83 Total: -3.99 kcal Atomic # 14 Polarization: -0.57 SS G_CDS: 2.02 Total: 1.45 kcal Total: -3.43 1.61 -1.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261310718.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.930 kcal (2) G-P(sol) polarization free energy of solvation -3.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -1.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds