Wall clock time and date at job start Mon Mar 30 2020 02:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99952 * 2 1 4 4 H 1.48496 * 109.47455 * 268.43370 * 3 2 1 5 5 H 1.48497 * 109.47269 * 28.43774 * 3 2 1 6 6 H 1.48508 * 109.47037 * 148.43108 * 3 2 1 7 7 C 1.37875 * 119.99928 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00077 * 18.85047 * 7 2 1 9 9 C 1.50705 * 119.99712 * 198.85154 * 7 2 1 10 10 N 1.46895 * 112.85148 * 83.73151 * 9 7 2 11 11 C 1.46954 * 111.00128 * 50.92794 * 10 9 7 12 12 C 1.53059 * 109.38059 * 176.80190 * 11 10 9 13 13 N 1.47003 * 109.33946 * 58.39036 * 12 11 10 14 14 C 1.46954 * 110.89376 * 300.69164 * 13 12 11 15 15 C 1.46965 * 110.99768 * 287.12840 * 10 9 7 16 16 C 1.53785 * 113.60828 * 214.92643 * 9 7 2 17 17 C 1.53950 * 87.02164 * 89.23168 * 16 9 7 18 18 C 1.53780 * 87.11433 * 25.36005 * 17 16 9 19 19 H 0.97002 * 119.99799 * 0.02562 * 1 2 3 20 20 H 1.08998 * 109.48873 * 296.77790 * 11 10 9 21 21 H 1.08998 * 109.48710 * 56.82669 * 11 10 9 22 22 H 1.09001 * 109.48605 * 178.38115 * 12 11 10 23 23 H 1.09003 * 109.48892 * 298.44678 * 12 11 10 24 24 H 1.00900 * 110.99251 * 176.81824 * 13 12 11 25 25 H 1.08998 * 109.48873 * 299.35672 * 14 13 12 26 26 H 1.08994 * 109.48984 * 179.28521 * 14 13 12 27 27 H 1.09003 * 109.48551 * 303.15540 * 15 10 9 28 28 H 1.08992 * 109.48658 * 63.20025 * 15 10 9 29 29 H 1.09010 * 113.60878 * 203.74374 * 16 9 7 30 30 H 1.08995 * 113.61546 * 334.64507 * 16 9 7 31 31 H 1.09007 * 113.53538 * 270.80955 * 17 16 9 32 32 H 1.09001 * 113.67239 * 139.93227 * 17 16 9 33 33 H 1.09001 * 113.61614 * 220.09339 * 18 17 16 34 34 H 1.08998 * 113.61561 * 89.18639 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5298 2.0274 -1.3995 5 1 1.4305 2.6620 0.6667 6 1 3.5298 1.4500 0.7330 7 6 2.0045 -1.1940 -0.0005 8 1 1.5080 -2.1041 -0.3031 9 6 3.4509 -1.2292 0.4212 10 7 3.6185 -1.3146 1.8780 11 6 2.8116 -2.4079 2.4378 12 6 3.0744 -2.5146 3.9418 13 7 2.7429 -1.2354 4.5859 14 6 3.5498 -0.1422 4.0262 15 6 3.2868 -0.0360 2.5222 16 6 4.2947 -2.2526 -0.3571 17 6 4.5664 -1.1324 -1.3776 18 6 4.3106 -0.1357 -0.2348 19 1 -0.4850 0.8401 -0.0004 20 1 1.7546 -2.2040 2.2669 21 1 3.0840 -3.3456 1.9536 22 1 2.4553 -3.3062 4.3639 23 1 4.1261 -2.7453 4.1117 24 1 2.8580 -1.2941 5.5866 25 1 4.6068 -0.3461 4.1970 26 1 3.2771 0.7956 4.5100 27 1 3.9061 0.7554 2.0997 28 1 2.2354 0.1950 2.3519 29 1 5.1857 -2.5811 0.1782 30 1 3.7129 -3.0811 -0.7611 31 1 3.8254 -1.0814 -2.1755 32 1 5.5911 -1.1176 -1.7487 33 1 3.7417 0.7424 -0.5404 34 1 5.2059 0.1156 0.3339 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261322273.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:49 Heat of formation + Delta-G solvation = 41.921755 kcal Electronic energy + Delta-G solvation = -15272.428806 eV Core-core repulsion = 13013.245223 eV Total energy + Delta-G solvation = -2259.183583 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.86256 -38.32675 -34.51748 -33.80473 -31.79814 -28.41334 -27.18524 -26.25716 -23.91704 -23.54485 -20.76408 -20.23010 -18.32645 -17.63855 -17.46029 -16.15731 -15.59496 -15.44371 -15.24394 -15.14799 -14.67293 -14.35588 -13.64155 -13.48332 -12.97626 -12.58171 -12.55555 -12.33967 -12.06677 -11.99767 -11.83660 -11.32260 -11.17179 -11.04434 -10.48893 -10.02397 -9.35173 -8.93526 -8.38444 -6.38847 1.26819 1.29058 1.41039 2.27595 2.93694 3.38429 3.42445 3.97062 4.10561 4.15275 4.19444 4.29455 4.37113 4.47198 4.59742 4.65500 4.73701 4.79060 4.90004 4.99919 5.01519 5.15974 5.19080 5.25282 5.28336 5.41589 5.72552 5.84923 6.02931 6.11415 6.46034 6.56944 6.64090 6.75981 7.28777 8.76934 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.027754 B = 0.016814 C = 0.014032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.639272 B = 1664.836577 C = 1994.936229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.031 3.969 3 Si 0.918 3.082 4 H -0.288 1.288 5 H -0.321 1.321 6 H -0.187 1.187 7 C -0.518 4.518 8 H 0.025 0.975 9 C 0.172 3.828 10 N -0.515 5.515 11 C 0.068 3.932 12 C 0.071 3.929 13 N -0.705 5.705 14 C 0.068 3.932 15 C 0.041 3.959 16 C -0.110 4.110 17 C -0.120 4.120 18 C -0.142 4.142 19 H 0.262 0.738 20 H 0.006 0.994 21 H 0.065 0.935 22 H 0.085 0.915 23 H 0.047 0.953 24 H 0.354 0.646 25 H 0.049 0.951 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.009 0.991 29 H 0.090 0.910 30 H 0.043 0.957 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.031 0.969 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.514 -0.868 6.468 13.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.169 4.169 3 Si 0.749 3.251 4 H -0.217 1.217 5 H -0.252 1.252 6 H -0.111 1.111 7 C -0.557 4.557 8 H 0.043 0.957 9 C 0.084 3.916 10 N -0.238 5.238 11 C -0.061 4.061 12 C -0.059 4.059 13 N -0.338 5.338 14 C -0.061 4.061 15 C -0.088 4.088 16 C -0.148 4.148 17 C -0.158 4.158 18 C -0.179 4.179 19 H 0.071 0.929 20 H 0.024 0.976 21 H 0.083 0.917 22 H 0.103 0.897 23 H 0.065 0.935 24 H 0.173 0.827 25 H 0.067 0.933 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.027 0.973 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.049 0.951 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.339 -0.794 6.173 12.935 hybrid contribution -0.883 0.732 -0.298 1.185 sum 10.455 -0.062 5.875 11.993 Atomic orbital electron populations 1.70160 1.08574 1.27838 1.50795 1.25829 0.94985 1.02830 0.93253 0.86942 0.80982 0.78490 0.78725 1.21657 1.25174 1.11059 1.21062 0.95552 0.93731 1.45350 0.95718 1.20312 0.91176 0.95317 0.84841 1.63120 1.52338 1.03392 1.04997 1.21781 0.95235 0.94690 0.94368 1.21956 0.99361 0.91373 0.93185 1.60362 1.59280 1.04793 1.09413 1.21958 0.95669 0.94968 0.93547 1.22436 0.98017 0.93524 0.94821 1.22837 0.99036 0.95978 0.96991 1.22536 1.01179 0.96336 0.95768 1.23577 0.99524 0.95931 0.98826 0.92913 0.97564 0.91658 0.89715 0.93516 0.82708 0.93283 0.89755 0.90136 0.97303 0.89154 0.93834 0.92084 0.89212 0.95125 0.88584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.72 13.96 21.45 0.30 -59.42 16 2 C 0.03 1.79 4.64 84.65 0.39 2.18 16 3 Si 0.92 44.56 22.26 68.60 1.53 46.09 16 4 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 5 H -0.32 -16.19 7.11 99.48 0.71 -15.48 16 6 H -0.19 -7.79 2.90 99.48 0.29 -7.50 16 7 C -0.52 -29.29 7.14 25.60 0.18 -29.11 16 8 H 0.02 1.59 8.06 -2.91 -0.02 1.56 16 9 C 0.17 7.72 0.41 3.31 0.00 7.72 16 10 N -0.51 -21.38 4.62 -847.40 -3.91 -25.29 16 11 C 0.07 2.82 5.13 86.31 0.44 3.26 16 12 C 0.07 2.24 6.72 86.30 0.58 2.82 16 13 N -0.71 -22.28 6.90 -513.32 -3.54 -25.83 16 14 C 0.07 2.17 6.72 86.31 0.58 2.75 16 15 C 0.04 1.65 3.87 86.31 0.33 1.99 16 16 C -0.11 -4.25 7.22 31.18 0.23 -4.03 16 17 C -0.12 -4.39 7.81 31.18 0.24 -4.15 16 18 C -0.14 -5.67 4.62 31.12 0.14 -5.53 16 19 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 20 H 0.01 0.31 7.20 -2.39 -0.02 0.29 16 21 H 0.06 2.59 7.96 -2.39 -0.02 2.57 16 22 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 23 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.35 8.55 8.90 -89.69 -0.80 7.76 16 25 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.08 3.13 5.10 -2.39 -0.01 3.12 16 28 H 0.01 0.44 5.73 -2.39 -0.01 0.42 16 29 H 0.09 3.04 8.14 -2.38 -0.02 3.02 16 30 H 0.04 1.76 8.09 -2.39 -0.02 1.74 16 31 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 32 H 0.09 2.58 8.14 -2.39 -0.02 2.57 16 33 H 0.03 1.34 1.99 -2.39 0.00 1.33 16 34 H 0.10 3.38 8.01 -2.39 -0.02 3.36 16 Total: -1.00 -67.37 245.46 -2.64 -70.01 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -0.13 Total: 16.53 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: 3.13 Total: -22.09 kcal Atomic # 7 Polarization: -103.38 SS G_CDS: -7.16 Total: -110.54 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.53 Total: 46.09 kcal Total: -67.37 -2.64 -70.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261322273.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.930 kcal (2) G-P(sol) polarization free energy of solvation -67.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds