Wall clock time and date at job start Mon Mar 30 2020 02:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00150 * 2 1 4 4 H 1.48503 * 109.47243 * 240.00399 * 3 2 1 5 5 H 1.48498 * 109.47280 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47145 * 120.00492 * 3 2 1 7 7 C 1.37878 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99770 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00003 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47032 * 179.97438 * 9 7 2 11 11 C 1.46006 * 111.00380 * 293.95641 * 10 9 7 12 12 C 1.53540 * 107.87780 * 173.10964 * 11 10 9 13 13 C 1.52669 * 107.27598 * 68.41233 * 12 11 10 14 14 C 1.49670 * 112.82791 * 307.54076 * 13 12 11 15 15 H 1.09005 * 106.34429 * 146.68034 * 14 13 12 16 16 C 1.53927 * 113.11810 * 262.32624 * 14 13 12 17 17 N 1.49200 * 102.78812 * 162.28898 * 16 14 13 18 18 C 1.48673 * 103.68864 * 317.72284 * 17 16 14 19 19 C 1.44960 * 110.98116 * 164.39938 * 10 9 7 20 20 H 1.09001 * 108.85921 * 36.14732 * 19 10 9 21 21 H 0.96999 * 119.99663 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.47007 * 60.00199 * 9 7 2 23 23 H 1.08996 * 109.47129 * 299.99950 * 9 7 2 24 24 H 1.09004 * 109.78114 * 53.51507 * 11 10 9 25 25 H 1.09004 * 109.82654 * 292.73190 * 11 10 9 26 26 H 1.08999 * 109.89708 * 308.96800 * 12 11 10 27 27 H 1.09004 * 109.89673 * 187.85773 * 12 11 10 28 28 H 1.08994 * 108.81539 * 186.67908 * 13 12 11 29 29 H 1.09000 * 108.80713 * 68.40155 * 13 12 11 30 30 H 1.09000 * 110.75213 * 43.96368 * 16 14 13 31 31 H 1.09004 * 110.74805 * 280.61202 * 16 14 13 32 32 H 1.00899 * 111.00028 * 76.96759 * 17 16 14 33 33 H 1.09002 * 110.36371 * 157.39733 * 18 17 16 34 34 H 1.09005 * 110.36376 * 279.60284 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0018 11 6 2.9653 -3.6533 -1.2480 12 6 4.0523 -4.7282 -1.1051 13 6 3.3480 -6.0820 -1.0587 14 6 2.2662 -6.1386 -0.0259 15 1 1.4922 -6.7924 -0.4280 16 6 2.7218 -6.7913 1.2915 17 7 1.6804 -6.3414 2.2605 18 6 1.4727 -4.9105 1.9146 19 6 1.5522 -4.8576 0.3622 20 1 0.5449 -4.8610 -0.0544 21 1 -0.4849 0.8401 0.0004 22 1 0.6239 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8896 24 1 3.4277 -2.6827 -1.4276 25 1 2.3038 -3.9056 -2.0768 26 1 4.6121 -4.5695 -0.1834 27 1 4.7266 -4.6900 -1.9607 28 1 4.0849 -6.8542 -0.8383 29 1 2.9113 -6.2846 -2.0366 30 1 3.7057 -6.4247 1.5841 31 1 2.7238 -7.8778 1.2036 32 1 0.8277 -6.8686 2.1457 33 1 0.4930 -4.5761 2.2559 34 1 2.2574 -4.2958 2.3557 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299892584.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:03 Heat of formation + Delta-G solvation = 3.703573 kcal Electronic energy + Delta-G solvation = -14600.556692 eV Core-core repulsion = 12339.715844 eV Total energy + Delta-G solvation = -2260.840848 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.64546 -35.60629 -33.67078 -32.14740 -29.29431 -27.86527 -26.30741 -23.86720 -22.30795 -21.33221 -20.92800 -17.89519 -16.53059 -16.13420 -15.15724 -14.60177 -14.36707 -14.09504 -13.52536 -13.33155 -12.72023 -12.48539 -12.23628 -11.82838 -11.40635 -11.37497 -10.82465 -10.74743 -10.71639 -10.59059 -10.26534 -10.03088 -9.99808 -9.54076 -9.17089 -8.47548 -8.40221 -7.06267 -6.01360 -4.02694 3.34304 3.38319 3.41339 4.41159 4.49978 4.78154 4.92250 5.06623 5.24009 5.33729 5.45519 5.57358 5.67728 5.79991 5.89022 5.96326 6.07767 6.18688 6.26991 6.29732 6.37968 6.44485 6.64997 6.76814 6.78290 6.87223 7.36644 7.38981 7.56854 7.84916 8.18141 8.29121 8.63830 9.05077 9.61528 11.09319 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.043076 B = 0.008914 C = 0.008006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.854043 B = 3140.439087 C = 3496.447378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.506 4.506 8 H 0.063 0.937 9 C 0.200 3.800 10 N -0.545 5.545 11 C 0.076 3.924 12 C -0.118 4.118 13 C -0.099 4.099 14 C -0.115 4.115 15 H 0.048 0.952 16 C 0.050 3.950 17 N -0.673 5.673 18 C 0.049 3.951 19 C 0.076 3.924 20 H 0.031 0.969 21 H 0.261 0.739 22 H -0.012 1.012 23 H 0.029 0.971 24 H 0.084 0.916 25 H 0.014 0.986 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.328 0.672 33 H 0.066 0.934 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.582 -11.517 -0.781 12.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.076 3.924 10 N -0.270 5.270 11 C -0.052 4.052 12 C -0.156 4.156 13 C -0.138 4.138 14 C -0.136 4.136 15 H 0.066 0.934 16 C -0.080 4.080 17 N -0.298 5.298 18 C -0.081 4.081 19 C -0.036 4.036 20 H 0.049 0.951 21 H 0.071 0.929 22 H 0.006 0.994 23 H 0.047 0.953 24 H 0.102 0.898 25 H 0.033 0.967 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.143 0.857 33 H 0.084 0.916 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.140 -11.255 0.198 12.374 hybrid contribution -0.880 0.746 -1.606 1.978 sum 4.260 -10.508 -1.407 11.426 Atomic orbital electron populations 1.69952 1.06066 1.26842 1.51076 1.24992 0.94858 0.99288 0.95503 0.86562 0.79430 0.82786 0.78638 1.20330 1.21401 1.20142 1.21136 0.93475 0.89896 1.49943 0.91872 1.19682 0.89798 0.87122 0.95842 1.59977 1.30535 1.02911 1.33586 1.21782 0.94368 0.99115 0.89932 1.21675 0.97856 0.94378 1.01664 1.20622 0.97102 0.98407 0.97633 1.21222 0.98084 0.97081 0.97205 0.93376 1.23143 0.97378 0.98333 0.89175 1.63631 1.11668 1.04410 1.50059 1.23506 1.02308 0.88839 0.93496 1.21954 0.95157 0.89653 0.96804 0.95127 0.92910 0.99443 0.95278 0.89751 0.96737 0.91075 0.92228 0.92328 0.92951 0.90086 0.91363 0.85748 0.91565 0.88755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -14.19 8.42 -34.44 -0.29 -14.48 16 8 H 0.06 1.75 7.14 -52.48 -0.37 1.37 16 9 C 0.20 5.23 4.48 -4.97 -0.02 5.21 16 10 N -0.54 -11.76 3.88 -229.15 -0.89 -12.65 16 11 C 0.08 1.50 5.38 -4.03 -0.02 1.48 16 12 C -0.12 -1.84 6.25 -26.62 -0.17 -2.00 16 13 C -0.10 -1.38 5.47 -28.55 -0.16 -1.54 16 14 C -0.12 -1.72 2.62 -92.44 -0.24 -1.97 16 15 H 0.05 0.68 8.06 -51.93 -0.42 0.26 16 16 C 0.05 0.67 6.81 -2.06 -0.01 0.66 16 17 N -0.67 -9.93 7.66 -108.65 -0.83 -10.76 16 18 C 0.05 0.86 6.55 -1.49 -0.01 0.85 16 19 C 0.08 1.40 2.89 -68.07 -0.20 1.20 16 20 H 0.03 0.61 7.82 -51.93 -0.41 0.21 16 21 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 22 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 23 H 0.03 0.81 7.57 -51.93 -0.39 0.41 16 24 H 0.08 1.80 6.71 -51.93 -0.35 1.45 16 25 H 0.01 0.29 8.10 -51.93 -0.42 -0.13 16 26 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.69 7.82 -51.93 -0.41 0.29 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.33 4.25 8.93 -39.29 -0.35 3.90 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.09 1.86 7.99 -51.93 -0.41 1.44 16 LS Contribution 265.44 15.07 4.00 4.00 Total: -1.00 -29.25 265.44 -8.85 -38.10 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -5.63 Total: -0.16 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -1.22 Total: -9.13 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: -0.99 Total: -49.50 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.25 -8.85 -38.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299892584.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.808 kcal (2) G-P(sol) polarization free energy of solvation -29.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds