Wall clock time and date at job start Mon Mar 30 2020 02:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00150 * 2 1 4 4 H 1.48503 * 109.47243 * 240.00399 * 3 2 1 5 5 H 1.48498 * 109.47280 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47145 * 120.00492 * 3 2 1 7 7 C 1.37878 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99770 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00003 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47032 * 179.97438 * 9 7 2 11 11 C 1.46006 * 111.00380 * 293.95641 * 10 9 7 12 12 C 1.53540 * 107.87780 * 173.10964 * 11 10 9 13 13 C 1.52669 * 107.27598 * 68.41233 * 12 11 10 14 14 C 1.49670 * 112.82791 * 307.54076 * 13 12 11 15 15 H 1.09005 * 106.34429 * 146.68034 * 14 13 12 16 16 C 1.53927 * 113.11810 * 262.32624 * 14 13 12 17 17 N 1.49200 * 102.78812 * 162.28898 * 16 14 13 18 18 C 1.48673 * 103.68864 * 317.72284 * 17 16 14 19 19 C 1.44960 * 110.98116 * 164.39938 * 10 9 7 20 20 H 1.09001 * 108.85921 * 36.14732 * 19 10 9 21 21 H 0.96999 * 119.99663 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.47007 * 60.00199 * 9 7 2 23 23 H 1.08996 * 109.47129 * 299.99950 * 9 7 2 24 24 H 1.09004 * 109.78114 * 53.51507 * 11 10 9 25 25 H 1.09004 * 109.82654 * 292.73190 * 11 10 9 26 26 H 1.08999 * 109.89708 * 308.96800 * 12 11 10 27 27 H 1.09004 * 109.89673 * 187.85773 * 12 11 10 28 28 H 1.08994 * 108.81539 * 186.67908 * 13 12 11 29 29 H 1.09000 * 108.80713 * 68.40155 * 13 12 11 30 30 H 1.09000 * 110.75213 * 43.96368 * 16 14 13 31 31 H 1.09004 * 110.74805 * 280.61202 * 16 14 13 32 32 H 1.00899 * 111.00028 * 76.96759 * 17 16 14 33 33 H 1.09002 * 110.36371 * 157.39733 * 18 17 16 34 34 H 1.09005 * 110.36376 * 279.60284 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0018 11 6 2.9653 -3.6533 -1.2480 12 6 4.0523 -4.7282 -1.1051 13 6 3.3480 -6.0820 -1.0587 14 6 2.2662 -6.1386 -0.0259 15 1 1.4922 -6.7924 -0.4280 16 6 2.7218 -6.7913 1.2915 17 7 1.6804 -6.3414 2.2605 18 6 1.4727 -4.9105 1.9146 19 6 1.5522 -4.8576 0.3622 20 1 0.5449 -4.8610 -0.0544 21 1 -0.4849 0.8401 0.0004 22 1 0.6239 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8896 24 1 3.4277 -2.6827 -1.4276 25 1 2.3038 -3.9056 -2.0768 26 1 4.6121 -4.5695 -0.1834 27 1 4.7266 -4.6900 -1.9607 28 1 4.0849 -6.8542 -0.8383 29 1 2.9113 -6.2846 -2.0366 30 1 3.7057 -6.4247 1.5841 31 1 2.7238 -7.8778 1.2036 32 1 0.8277 -6.8686 2.1457 33 1 0.4930 -4.5761 2.2559 34 1 2.2574 -4.2958 2.3557 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299892584.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:03 Heat of formation + Delta-G solvation = -17.659528 kcal Electronic energy + Delta-G solvation = -14601.483065 eV Core-core repulsion = 12339.715844 eV Total energy + Delta-G solvation = -2261.767222 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.04097 -37.14789 -35.30322 -34.06622 -30.64414 -29.61859 -27.94365 -25.59318 -23.64515 -22.98932 -22.46264 -19.33377 -18.37598 -17.75367 -16.78546 -16.21135 -15.96570 -15.55007 -15.02281 -14.77457 -14.27033 -14.10869 -13.86905 -13.48542 -13.12270 -12.75346 -12.63221 -12.51179 -12.18349 -12.03219 -11.97223 -11.65646 -11.36098 -11.22758 -10.96504 -10.60911 -9.71949 -8.85384 -8.21135 -6.31848 1.39934 1.43544 1.51375 2.39217 3.10373 3.15941 3.34376 3.62605 3.78203 4.02204 4.14380 4.24750 4.43990 4.49319 4.56538 4.62475 4.78336 4.88918 4.92828 5.07050 5.10619 5.13951 5.17200 5.20725 5.23398 5.33113 5.48939 5.61437 5.68842 6.07668 6.40507 6.44573 6.79255 6.86318 7.38065 8.89490 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.043076 B = 0.008914 C = 0.008006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.854043 B = 3140.439087 C = 3496.447378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.522 4.522 8 H 0.064 0.936 9 C 0.217 3.783 10 N -0.547 5.547 11 C 0.071 3.929 12 C -0.107 4.107 13 C -0.098 4.098 14 C -0.114 4.114 15 H 0.061 0.939 16 C 0.056 3.944 17 N -0.669 5.669 18 C 0.056 3.944 19 C 0.069 3.931 20 H 0.009 0.991 21 H 0.264 0.736 22 H -0.048 1.048 23 H 0.003 0.997 24 H 0.061 0.939 25 H 0.006 0.994 26 H 0.066 0.934 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.342 0.658 33 H 0.054 0.946 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.388 -12.888 -0.957 14.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.795 3.205 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.560 4.560 8 H 0.082 0.918 9 C 0.091 3.909 10 N -0.272 5.272 11 C -0.056 4.056 12 C -0.145 4.145 13 C -0.136 4.136 14 C -0.134 4.134 15 H 0.080 0.920 16 C -0.074 4.074 17 N -0.295 5.295 18 C -0.075 4.075 19 C -0.042 4.042 20 H 0.027 0.973 21 H 0.073 0.927 22 H -0.030 1.030 23 H 0.021 0.979 24 H 0.079 0.921 25 H 0.024 0.976 26 H 0.084 0.916 27 H 0.104 0.896 28 H 0.111 0.889 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.122 0.878 32 H 0.157 0.843 33 H 0.073 0.927 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.959 -12.659 0.021 14.446 hybrid contribution -1.489 1.134 -1.549 2.429 sum 5.470 -11.526 -1.528 12.849 Atomic orbital electron populations 1.70090 1.07798 1.27956 1.51811 1.25944 0.95753 1.03279 0.94791 0.85418 0.78141 0.77798 0.79162 1.19171 1.20835 1.19261 1.21433 0.93614 0.90959 1.49995 0.91818 1.19302 0.89819 0.88931 0.92839 1.59930 1.29385 1.03187 1.34681 1.21853 0.95216 0.99830 0.88750 1.21613 0.96638 0.93651 1.02576 1.20649 0.97301 0.98063 0.97600 1.21228 0.98907 0.94665 0.98600 0.92001 1.23221 0.96456 1.00233 0.87458 1.63567 1.12840 1.02574 1.50553 1.23255 1.00781 0.90715 0.92707 1.22126 0.94558 0.90174 0.97375 0.97321 0.92706 1.03017 0.97928 0.92059 0.97600 0.91566 0.89580 0.88898 0.92248 0.90446 0.87770 0.84262 0.92714 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.46 13.29 21.45 0.28 -57.18 16 2 C 0.00 0.01 5.46 84.65 0.46 0.47 16 3 Si 0.97 44.91 29.54 68.60 2.03 46.94 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.52 -30.21 8.42 25.60 0.22 -30.00 16 8 H 0.06 3.60 7.14 -2.91 -0.02 3.58 16 9 C 0.22 11.99 4.48 85.56 0.38 12.38 16 10 N -0.55 -24.35 3.88 -878.89 -3.41 -27.76 16 11 C 0.07 2.84 5.38 86.65 0.47 3.30 16 12 C -0.11 -3.10 6.25 30.67 0.19 -2.91 16 13 C -0.10 -2.38 5.47 29.42 0.16 -2.22 16 14 C -0.11 -3.12 2.62 -11.97 -0.03 -3.15 16 15 H 0.06 1.56 8.06 -2.38 -0.02 1.54 16 16 C 0.06 1.32 6.81 86.17 0.59 1.91 16 17 N -0.67 -18.56 7.66 -497.67 -3.81 -22.37 16 18 C 0.06 2.01 6.55 86.83 0.57 2.58 16 19 C 0.07 2.57 2.89 45.73 0.13 2.71 16 20 H 0.01 0.36 7.82 -2.39 -0.02 0.34 16 21 H 0.26 15.26 8.31 -92.71 -0.77 14.48 16 22 H -0.05 -2.91 8.12 -2.39 -0.02 -2.93 16 23 H 0.00 0.16 7.57 -2.39 -0.02 0.14 16 24 H 0.06 2.67 6.71 -2.39 -0.02 2.66 16 25 H 0.01 0.24 8.10 -2.38 -0.02 0.22 16 26 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 28 H 0.09 1.71 7.82 -2.39 -0.02 1.69 16 29 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 31 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.34 8.12 8.93 -89.69 -0.80 7.31 16 33 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.07 2.89 7.99 -2.38 -0.02 2.87 16 Total: -1.00 -65.22 265.44 -1.51 -66.73 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 0.26 Total: 8.57 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: 3.14 Total: -14.93 kcal Atomic # 7 Polarization: -100.37 SS G_CDS: -6.94 Total: -107.31 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -65.22 -1.51 -66.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299892584.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.075 kcal (2) G-P(sol) polarization free energy of solvation -65.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds