Wall clock time and date at job start Mon Mar 30 2020 02:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00212 * 2 1 4 4 H 1.48498 * 109.46934 * 270.00276 * 3 2 1 5 5 H 1.48503 * 109.47143 * 30.00213 * 3 2 1 6 6 H 1.48497 * 109.46957 * 150.00339 * 3 2 1 7 7 C 1.37883 * 119.99600 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99811 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00256 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47306 * 180.02562 * 9 7 2 11 11 C 1.48640 * 110.99464 * 49.51456 * 10 9 7 12 12 C 1.52248 * 105.87449 * 119.02770 * 11 10 9 13 13 H 1.08997 * 109.51291 * 272.47865 * 12 11 10 14 14 N 1.45093 * 118.17231 * 145.92775 * 12 11 10 15 15 C 1.47768 * 108.49692 * 178.55325 * 14 12 11 16 16 C 1.52548 * 111.87713 * 58.51852 * 15 14 12 17 17 C 1.53914 * 111.50166 * 307.03563 * 16 15 14 18 18 C 1.51849 * 106.68724 * 55.33009 * 17 16 15 19 19 H 1.09004 * 111.30167 * 58.07541 * 18 17 16 20 20 C 1.49038 * 111.00116 * 169.99824 * 10 9 7 21 21 H 0.97002 * 119.99342 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47338 * 60.00245 * 9 7 2 23 23 H 1.09006 * 109.47254 * 300.00478 * 9 7 2 24 24 H 1.08996 * 110.17336 * 359.92376 * 11 10 9 25 25 H 1.09004 * 110.16684 * 238.12219 * 11 10 9 26 26 H 1.00901 * 111.00115 * 300.77499 * 14 12 11 27 27 H 1.09002 * 109.00074 * 179.13426 * 15 14 12 28 28 H 1.08995 * 109.00384 * 297.90236 * 15 14 12 29 29 H 1.09003 * 109.07592 * 186.51579 * 16 15 14 30 30 H 1.09000 * 109.02042 * 67.52035 * 16 15 14 31 31 H 1.08994 * 110.00782 * 296.04165 * 17 16 15 32 32 H 1.08997 * 110.00934 * 174.62413 * 17 16 15 33 33 H 1.08997 * 110.62206 * 95.02912 * 20 10 9 34 34 H 1.09001 * 110.62087 * 332.02646 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0005 11 6 3.2364 -3.4351 1.0549 12 6 3.0904 -4.6290 1.9884 13 1 2.3486 -4.4036 2.7544 14 7 4.2879 -5.1635 2.6093 15 6 3.8988 -6.2840 3.4905 16 6 3.1740 -7.3854 2.7232 17 6 1.9859 -6.8258 1.9205 18 6 2.5395 -5.7260 1.0318 19 1 3.3238 -6.1041 0.3758 20 6 1.5111 -4.9121 0.2411 21 1 -0.4849 0.8401 -0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8897 24 1 3.0581 -2.5081 1.5997 25 1 4.2317 -3.4252 0.6104 26 1 4.9525 -5.4653 1.9127 27 1 4.7946 -6.7020 3.9497 28 1 3.2425 -5.9073 4.2749 29 1 2.8073 -8.1299 3.4299 30 1 3.8750 -7.8608 2.0371 31 1 1.2377 -6.4158 2.5988 32 1 1.5451 -7.6130 1.3090 33 1 1.2763 -5.4037 -0.7030 34 1 0.6071 -4.7593 0.8307 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299894120.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:06 Heat of formation + Delta-G solvation = 1.557674 kcal Electronic energy + Delta-G solvation = -14401.308758 eV Core-core repulsion = 12140.374857 eV Total energy + Delta-G solvation = -2260.933901 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.85081 -36.01795 -32.80380 -32.12057 -30.30979 -27.31933 -26.60621 -23.95948 -21.88946 -21.30996 -20.16378 -19.76731 -16.26504 -15.63042 -15.29868 -14.69222 -14.63357 -14.00141 -13.82005 -13.10150 -12.79188 -12.45375 -12.10616 -11.86829 -11.64009 -11.44263 -11.01778 -10.95444 -10.68985 -10.67031 -10.43509 -10.31982 -10.13219 -9.77930 -9.09132 -8.46879 -8.08981 -7.23096 -6.03041 -4.04063 3.33438 3.39124 3.43269 4.27944 4.43526 4.74128 4.84311 4.92585 5.11144 5.29165 5.32803 5.39934 5.52241 5.69755 5.74696 5.87141 5.90046 5.97005 5.99102 6.12080 6.27140 6.37683 6.55447 6.62478 6.82935 7.18423 7.25348 7.41064 7.53976 7.78492 8.01526 8.22391 8.52068 9.03553 9.59960 11.08243 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.054035 B = 0.007649 C = 0.007057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.054168 B = 3659.966722 C = 3966.573105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.065 0.935 9 C 0.186 3.814 10 N -0.526 5.526 11 C 0.061 3.939 12 C 0.060 3.940 13 H 0.077 0.923 14 N -0.663 5.663 15 C 0.054 3.946 16 C -0.153 4.153 17 C -0.106 4.106 18 C -0.142 4.142 19 H 0.078 0.922 20 C 0.049 3.951 21 H 0.261 0.739 22 H 0.031 0.969 23 H -0.009 1.009 24 H 0.081 0.919 25 H 0.062 0.938 26 H 0.338 0.662 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.340 -12.698 5.036 14.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.083 0.917 9 C 0.060 3.940 10 N -0.251 5.251 11 C -0.068 4.068 12 C -0.052 4.052 13 H 0.095 0.905 14 N -0.291 5.291 15 C -0.076 4.076 16 C -0.193 4.193 17 C -0.144 4.144 18 C -0.163 4.163 19 H 0.096 0.904 20 C -0.079 4.079 21 H 0.071 0.929 22 H 0.050 0.950 23 H 0.009 0.991 24 H 0.099 0.901 25 H 0.080 0.920 26 H 0.155 0.845 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.466 -12.050 5.074 14.171 hybrid contribution -0.377 0.187 0.061 0.425 sum 5.089 -11.864 5.135 13.893 Atomic orbital electron populations 1.69968 1.06099 1.26792 1.50800 1.24997 0.94861 0.99363 0.95296 0.86501 0.79771 0.83043 0.78163 1.20587 1.21294 1.19751 1.21240 0.93531 0.90125 1.50359 0.91695 1.19908 0.90550 0.87454 0.96069 1.64501 1.14595 1.02175 1.43803 1.22407 0.96633 0.96537 0.91203 1.22558 0.91860 0.95113 0.95665 0.90468 1.60907 1.12818 1.30768 1.24585 1.22059 0.99407 0.90130 0.95997 1.22212 0.98207 0.99069 0.99762 1.21421 0.97225 0.97932 0.97851 1.22768 0.99900 0.96349 0.97284 0.90358 1.22716 0.95228 0.91656 0.98337 0.92909 0.95046 0.99086 0.90075 0.91952 0.84510 0.91075 0.91273 0.91771 0.92329 0.91781 0.92021 0.91408 0.94080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -14.61 7.90 -34.44 -0.27 -14.88 16 8 H 0.06 1.82 6.84 -52.49 -0.36 1.46 16 9 C 0.19 4.96 4.87 -4.98 -0.02 4.93 16 10 N -0.53 -11.72 5.37 -233.08 -1.25 -12.97 16 11 C 0.06 1.23 5.77 -3.24 -0.02 1.21 16 12 C 0.06 0.99 2.67 -67.67 -0.18 0.81 16 13 H 0.08 1.39 7.80 -51.93 -0.41 0.98 16 14 N -0.66 -9.36 7.00 -106.48 -0.75 -10.10 16 15 C 0.05 0.62 6.44 -3.58 -0.02 0.60 16 16 C -0.15 -1.64 5.97 -26.49 -0.16 -1.79 16 17 C -0.11 -1.33 5.74 -26.84 -0.15 -1.49 16 18 C -0.14 -2.16 2.63 -89.73 -0.24 -2.40 16 19 H 0.08 1.18 8.07 -51.93 -0.42 0.76 16 20 C 0.05 0.91 6.34 -2.56 -0.02 0.89 16 21 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 22 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 23 H -0.01 -0.24 7.84 -51.93 -0.41 -0.65 16 24 H 0.08 1.87 6.39 -51.93 -0.33 1.54 16 25 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.34 4.40 8.68 -39.29 -0.34 4.05 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.83 8.07 -51.93 -0.42 0.42 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.84 8.01 -51.93 -0.42 0.42 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.04 0.79 7.65 -51.93 -0.40 0.39 16 LS Contribution 264.97 15.07 3.99 3.99 Total: -1.00 -29.53 264.97 -9.06 -38.58 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -5.59 Total: 0.47 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -1.18 Total: -10.59 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: -1.26 Total: -49.28 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.53 -9.06 -38.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299894120.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.142 kcal (2) G-P(sol) polarization free energy of solvation -29.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds