Wall clock time and date at job start Mon Mar 30 2020 02:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00212 * 2 1 4 4 H 1.48498 * 109.46934 * 270.00276 * 3 2 1 5 5 H 1.48503 * 109.47143 * 30.00213 * 3 2 1 6 6 H 1.48497 * 109.46957 * 150.00339 * 3 2 1 7 7 C 1.37883 * 119.99600 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99811 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00256 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47306 * 180.02562 * 9 7 2 11 11 C 1.48640 * 110.99464 * 49.51456 * 10 9 7 12 12 C 1.52248 * 105.87449 * 119.02770 * 11 10 9 13 13 H 1.08997 * 109.51291 * 272.47865 * 12 11 10 14 14 N 1.45093 * 118.17231 * 145.92775 * 12 11 10 15 15 C 1.47768 * 108.49692 * 178.55325 * 14 12 11 16 16 C 1.52548 * 111.87713 * 58.51852 * 15 14 12 17 17 C 1.53914 * 111.50166 * 307.03563 * 16 15 14 18 18 C 1.51849 * 106.68724 * 55.33009 * 17 16 15 19 19 H 1.09004 * 111.30167 * 58.07541 * 18 17 16 20 20 C 1.49038 * 111.00116 * 169.99824 * 10 9 7 21 21 H 0.97002 * 119.99342 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47338 * 60.00245 * 9 7 2 23 23 H 1.09006 * 109.47254 * 300.00478 * 9 7 2 24 24 H 1.08996 * 110.17336 * 359.92376 * 11 10 9 25 25 H 1.09004 * 110.16684 * 238.12219 * 11 10 9 26 26 H 1.00901 * 111.00115 * 300.77499 * 14 12 11 27 27 H 1.09002 * 109.00074 * 179.13426 * 15 14 12 28 28 H 1.08995 * 109.00384 * 297.90236 * 15 14 12 29 29 H 1.09003 * 109.07592 * 186.51579 * 16 15 14 30 30 H 1.09000 * 109.02042 * 67.52035 * 16 15 14 31 31 H 1.08994 * 110.00782 * 296.04165 * 17 16 15 32 32 H 1.08997 * 110.00934 * 174.62413 * 17 16 15 33 33 H 1.08997 * 110.62206 * 95.02912 * 20 10 9 34 34 H 1.09001 * 110.62087 * 332.02646 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0005 11 6 3.2364 -3.4351 1.0549 12 6 3.0904 -4.6290 1.9884 13 1 2.3486 -4.4036 2.7544 14 7 4.2879 -5.1635 2.6093 15 6 3.8988 -6.2840 3.4905 16 6 3.1740 -7.3854 2.7232 17 6 1.9859 -6.8258 1.9205 18 6 2.5395 -5.7260 1.0318 19 1 3.3238 -6.1041 0.3758 20 6 1.5111 -4.9121 0.2411 21 1 -0.4849 0.8401 -0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8897 24 1 3.0581 -2.5081 1.5997 25 1 4.2317 -3.4252 0.6104 26 1 4.9525 -5.4653 1.9127 27 1 4.7946 -6.7020 3.9497 28 1 3.2425 -5.9073 4.2749 29 1 2.8073 -8.1299 3.4299 30 1 3.8750 -7.8608 2.0371 31 1 1.2377 -6.4158 2.5988 32 1 1.5451 -7.6130 1.3090 33 1 1.2763 -5.4037 -0.7030 34 1 0.6071 -4.7593 0.8307 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299894120.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:06 Heat of formation + Delta-G solvation = -20.753306 kcal Electronic energy + Delta-G solvation = -14402.276235 eV Core-core repulsion = 12140.374857 eV Total energy + Delta-G solvation = -2261.901378 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.18915 -37.51855 -34.86273 -33.28851 -31.89130 -28.85735 -28.38621 -25.57746 -23.53515 -22.40412 -21.48362 -21.38514 -18.40193 -17.01943 -16.86118 -16.38390 -15.74514 -15.41887 -15.26043 -14.77822 -14.19233 -14.14795 -13.54123 -13.37145 -13.19579 -12.94165 -12.71020 -12.57522 -12.21126 -12.10528 -11.86826 -11.77298 -11.61016 -11.42267 -11.18613 -10.67209 -9.21901 -9.08131 -8.24688 -6.34441 1.39551 1.41404 1.52661 2.38435 3.05599 3.10654 3.30289 3.68114 3.76818 3.97251 4.13196 4.26989 4.31738 4.43590 4.54584 4.66458 4.76101 4.80225 4.93968 4.95873 5.02902 5.07647 5.14157 5.18619 5.21946 5.32220 5.39642 5.61918 5.90895 6.02963 6.21652 6.48268 6.52855 6.81586 7.34987 8.87505 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.054035 B = 0.007649 C = 0.007057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.054168 B = 3659.966722 C = 3966.573105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.971 3.029 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.531 4.531 8 H 0.065 0.935 9 C 0.203 3.797 10 N -0.536 5.536 11 C 0.062 3.938 12 C 0.072 3.928 13 H 0.059 0.941 14 N -0.669 5.669 15 C 0.052 3.948 16 C -0.145 4.145 17 C -0.105 4.105 18 C -0.126 4.126 19 H 0.089 0.911 20 C 0.044 3.956 21 H 0.265 0.735 22 H 0.002 0.998 23 H -0.038 1.038 24 H 0.047 0.953 25 H 0.070 0.930 26 H 0.347 0.653 27 H 0.096 0.904 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.997 -13.941 5.558 16.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.795 3.205 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.569 4.569 8 H 0.084 0.916 9 C 0.076 3.924 10 N -0.261 5.261 11 C -0.066 4.066 12 C -0.040 4.040 13 H 0.077 0.923 14 N -0.298 5.298 15 C -0.077 4.077 16 C -0.184 4.184 17 C -0.143 4.143 18 C -0.146 4.146 19 H 0.107 0.893 20 C -0.084 4.084 21 H 0.074 0.926 22 H 0.020 0.980 23 H -0.021 1.021 24 H 0.065 0.935 25 H 0.088 0.912 26 H 0.165 0.835 27 H 0.114 0.886 28 H 0.079 0.921 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 7.139 -13.325 5.600 16.120 hybrid contribution -0.903 0.527 -0.099 1.050 sum 6.236 -12.798 5.501 15.262 Atomic orbital electron populations 1.70096 1.07807 1.28013 1.51482 1.25956 0.95781 1.03353 0.94569 0.85360 0.78551 0.78032 0.78585 1.19640 1.20574 1.18797 1.21536 0.93695 0.91175 1.50502 0.91645 1.19530 0.90576 0.89086 0.93211 1.64395 1.14182 1.02312 1.45178 1.22287 0.96079 0.96934 0.91325 1.22194 0.92827 0.94178 0.94835 0.92312 1.60845 1.11731 1.32483 1.24759 1.22170 1.00601 0.89551 0.95384 1.22151 0.97324 0.98912 1.00021 1.21440 0.98017 0.97225 0.97571 1.22687 0.98782 0.96386 0.96773 0.89286 1.22821 0.95622 0.90540 0.99409 0.92582 0.97975 1.02053 0.93477 0.91218 0.83489 0.88617 0.92059 0.89568 0.91032 0.92715 0.90405 0.90377 0.95349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.53 13.29 21.45 0.28 -57.25 16 2 C 0.00 0.10 5.46 84.66 0.46 0.56 16 3 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.53 -31.08 7.90 25.60 0.20 -30.88 16 8 H 0.07 3.74 6.84 -2.91 -0.02 3.72 16 9 C 0.20 11.36 4.87 85.56 0.42 11.78 16 10 N -0.54 -24.52 5.37 -891.32 -4.78 -29.31 16 11 C 0.06 2.56 5.77 85.72 0.49 3.06 16 12 C 0.07 2.36 2.67 45.91 0.12 2.48 16 13 H 0.06 2.14 7.80 -2.39 -0.02 2.13 16 14 N -0.67 -17.53 7.00 -490.79 -3.43 -20.96 16 15 C 0.05 1.04 6.44 85.99 0.55 1.60 16 16 C -0.14 -2.53 5.97 30.75 0.18 -2.35 16 17 C -0.10 -2.36 5.74 30.52 0.18 -2.18 16 18 C -0.13 -3.62 2.63 -10.22 -0.03 -3.65 16 19 H 0.09 2.43 8.07 -2.38 -0.02 2.41 16 20 C 0.04 1.64 6.34 85.94 0.54 2.19 16 21 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 22 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 23 H -0.04 -2.31 7.84 -2.38 -0.02 -2.33 16 24 H 0.05 2.25 6.39 -2.39 -0.02 2.24 16 25 H 0.07 2.74 8.14 -2.38 -0.02 2.72 16 26 H 0.35 8.07 8.68 -89.69 -0.78 7.29 16 27 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.06 1.34 8.07 -2.39 -0.02 1.32 16 29 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.05 1.35 8.01 -2.39 -0.02 1.33 16 32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.03 1.12 7.65 -2.39 -0.02 1.10 16 Total: -1.00 -65.18 264.97 -2.49 -67.67 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 0.29 Total: 10.04 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: 3.13 Total: -17.41 kcal Atomic # 7 Polarization: -99.58 SS G_CDS: -7.93 Total: -107.52 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -65.18 -2.49 -67.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299894120.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.916 kcal (2) G-P(sol) polarization free energy of solvation -65.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds