Wall clock time and date at job start Mon Mar 30 2020 02:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00253 * 2 1 4 4 H 1.48501 * 109.47334 * 271.31902 * 3 2 1 5 5 H 1.48500 * 109.47311 * 31.32346 * 3 2 1 6 6 H 1.48507 * 109.47248 * 151.31972 * 3 2 1 7 7 C 1.38815 * 119.99929 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99836 * 341.04662 * 7 2 1 9 9 N 1.36933 * 120.00107 * 160.77626 * 7 2 1 10 10 C 1.47276 * 121.20197 * 332.32282 * 9 7 2 11 11 C 1.53143 * 108.90424 * 230.93621 * 10 9 7 12 12 N 1.47065 * 109.82308 * 307.13579 * 11 10 9 13 13 C 1.46586 * 110.81485 * 62.26180 * 12 11 10 14 14 H 1.09000 * 109.34096 * 55.77142 * 13 12 11 15 15 C 1.52754 * 111.00769 * 176.48734 * 13 12 11 16 16 C 1.53167 * 108.98043 * 181.33747 * 15 13 12 17 17 C 1.52893 * 109.91600 * 300.51131 * 16 15 13 18 18 C 1.53166 * 109.90408 * 58.92840 * 17 16 15 19 19 C 1.46820 * 121.19720 * 152.03358 * 9 7 2 20 20 H 1.09000 * 109.56436 * 247.04663 * 19 9 7 21 21 H 0.97009 * 119.99705 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.56124 * 350.76007 * 10 9 7 23 23 H 1.08996 * 109.56534 * 111.10866 * 10 9 7 24 24 H 1.09003 * 109.41631 * 67.24888 * 11 10 9 25 25 H 1.09004 * 109.41153 * 187.03314 * 11 10 9 26 26 H 1.00900 * 111.00177 * 298.44632 * 12 11 10 27 27 H 1.09009 * 109.55250 * 301.18652 * 15 13 12 28 28 H 1.09001 * 109.55283 * 61.48292 * 15 13 12 29 29 H 1.08998 * 109.39292 * 60.64908 * 16 15 13 30 30 H 1.08998 * 109.39285 * 180.37509 * 16 15 13 31 31 H 1.08998 * 109.40077 * 179.06314 * 17 16 15 32 32 H 1.09003 * 109.39795 * 298.88572 * 17 16 15 33 33 H 1.08998 * 109.55267 * 60.30757 * 18 17 16 34 34 H 1.09005 * 109.55569 * 180.61724 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4699 2.0625 -1.3997 5 1 1.4620 2.6444 0.7278 6 1 3.5615 1.4322 0.6719 7 6 2.0102 -1.2022 -0.0005 8 1 1.5141 -2.1123 0.3029 9 7 3.3223 -1.2351 -0.3910 10 6 3.8596 -0.2494 -1.3443 11 6 4.5902 -0.9920 -2.4668 12 7 5.5803 -1.9151 -1.8921 13 6 4.9250 -2.9342 -1.0671 14 1 4.1743 -3.4532 -1.6631 15 6 5.9396 -3.9463 -0.5384 16 6 5.2029 -5.0055 0.2872 17 6 4.4732 -4.3409 1.4550 18 6 3.4759 -3.3060 0.9256 19 6 4.2457 -2.2505 0.1304 20 1 4.9988 -1.7720 0.7564 21 1 -0.4850 0.8401 -0.0004 22 1 3.0413 0.3347 -1.7653 23 1 4.5566 0.4127 -0.8307 24 1 3.8686 -1.5564 -3.0575 25 1 5.0968 -0.2709 -3.1083 26 1 6.2770 -1.4138 -1.3618 27 1 6.4478 -4.4249 -1.3756 28 1 6.6697 -3.4366 0.0902 29 1 4.4798 -5.5195 -0.3460 30 1 5.9219 -5.7279 0.6735 31 1 3.9387 -5.0995 2.0267 32 1 5.1987 -3.8455 2.1003 33 1 2.7443 -3.7988 0.2852 34 1 2.9670 -2.8282 1.7628 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306332476.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:39 Heat of formation + Delta-G solvation = 14.505792 kcal Electronic energy + Delta-G solvation = -15027.547972 eV Core-core repulsion = 12767.175543 eV Total energy + Delta-G solvation = -2260.372429 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.25184 -35.55177 -33.87829 -31.39202 -29.79070 -29.20319 -25.85674 -23.58432 -22.55718 -21.12060 -20.06459 -19.48456 -16.58666 -15.53709 -15.12690 -14.74789 -14.29500 -14.07293 -13.46622 -12.95687 -12.92481 -12.74190 -12.27132 -11.76767 -11.58666 -11.50396 -10.88198 -10.73076 -10.64393 -10.32920 -10.18859 -10.06836 -9.91744 -9.78403 -9.39748 -8.78208 -7.94970 -6.83202 -5.94542 -3.31102 3.30005 3.46456 3.48942 4.51907 4.63388 4.76842 5.14160 5.29553 5.36447 5.50270 5.59702 5.69995 5.82333 5.93256 5.93895 5.97923 6.04503 6.05792 6.11754 6.34940 6.43034 6.47996 6.48923 6.51108 6.62788 6.69505 6.95737 7.03728 7.50339 7.83646 7.94272 8.34336 8.91875 9.72093 10.10449 11.21295 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.037309 B = 0.012782 C = 0.010479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.311161 B = 2190.029002 C = 2671.292328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.022 3.978 3 Si 0.886 3.114 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.274 1.274 7 C -0.255 4.255 8 H 0.091 0.909 9 N -0.605 5.605 10 C 0.087 3.913 11 C 0.043 3.957 12 N -0.681 5.681 13 C 0.071 3.929 14 H 0.079 0.921 15 C -0.107 4.107 16 C -0.115 4.115 17 C -0.120 4.120 18 C -0.104 4.104 19 C 0.147 3.853 20 H 0.027 0.973 21 H 0.262 0.738 22 H 0.076 0.924 23 H 0.022 0.978 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.329 0.671 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.910 -5.949 -0.609 12.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.176 4.176 3 Si 0.717 3.283 4 H -0.217 1.217 5 H -0.233 1.233 6 H -0.200 1.200 7 C -0.383 4.383 8 H 0.109 0.891 9 N -0.330 5.330 10 C -0.040 4.040 11 C -0.088 4.088 12 N -0.308 5.308 13 C -0.041 4.041 14 H 0.097 0.903 15 C -0.145 4.145 16 C -0.153 4.153 17 C -0.158 4.158 18 C -0.143 4.143 19 C 0.040 3.960 20 H 0.045 0.955 21 H 0.072 0.928 22 H 0.094 0.906 23 H 0.040 0.960 24 H 0.091 0.909 25 H 0.084 0.916 26 H 0.145 0.855 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.755 -6.255 -1.177 12.497 hybrid contribution 0.101 1.711 0.809 1.895 sum 10.856 -4.544 -0.368 11.774 Atomic orbital electron populations 1.69818 1.05645 1.26452 1.53459 1.25284 0.95217 0.97503 0.99622 0.86930 0.79691 0.84728 0.76969 1.21700 1.23250 1.19974 1.18910 0.84018 0.94696 1.40722 0.89103 1.44459 1.07789 1.32928 1.47790 1.22047 0.97850 0.92720 0.91355 1.22437 0.94362 0.95115 0.96905 1.60874 1.15169 1.16441 1.38336 1.22087 0.95427 0.92469 0.94102 0.90296 1.21477 0.97636 0.96434 0.98967 1.21496 0.99077 0.97463 0.97275 1.21597 0.98467 0.98344 0.97367 1.21555 0.97204 0.95247 1.00250 1.21279 0.91933 0.89773 0.93036 0.95515 0.92818 0.90573 0.95997 0.90880 0.91645 0.85473 0.91838 0.92527 0.92088 0.92506 0.92390 0.92564 0.91543 0.91116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.02 13.97 55.49 0.78 -27.25 16 2 C 0.02 0.65 5.27 -17.43 -0.09 0.56 16 3 Si 0.89 22.76 24.31 -169.99 -4.13 18.63 16 4 H -0.29 -7.17 6.58 56.52 0.37 -6.80 16 5 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 6 H -0.27 -7.00 6.58 56.52 0.37 -6.63 16 7 C -0.26 -7.09 9.19 -15.06 -0.14 -7.23 16 8 H 0.09 2.66 6.51 -52.48 -0.34 2.32 16 9 N -0.61 -14.46 2.79 -164.33 -0.46 -14.92 16 10 C 0.09 1.92 4.33 -3.54 -0.02 1.91 16 11 C 0.04 0.79 6.67 -3.66 -0.02 0.76 16 12 N -0.68 -11.53 6.57 -106.48 -0.70 -12.23 16 13 C 0.07 1.22 2.31 -67.64 -0.16 1.06 16 14 H 0.08 1.51 8.12 -51.93 -0.42 1.09 16 15 C -0.11 -1.49 5.60 -26.77 -0.15 -1.64 16 16 C -0.12 -1.50 5.91 -26.70 -0.16 -1.65 16 17 C -0.12 -1.72 5.89 -26.70 -0.16 -1.88 16 18 C -0.10 -1.94 3.99 -26.68 -0.11 -2.04 16 19 C 0.15 2.93 2.81 -67.42 -0.19 2.74 16 20 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 22 H 0.08 1.84 4.70 -51.93 -0.24 1.59 16 23 H 0.02 0.49 6.89 -51.93 -0.36 0.13 16 24 H 0.07 1.41 8.13 -51.93 -0.42 0.99 16 25 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.33 5.23 8.81 -39.29 -0.35 4.88 16 27 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 1.31 7.66 -51.93 -0.40 0.91 16 34 H 0.07 1.45 7.61 -51.93 -0.40 1.05 16 LS Contribution 251.76 15.07 3.79 3.79 Total: -1.00 -29.85 251.76 -7.41 -37.26 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -5.50 Total: 2.12 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -1.19 Total: -7.41 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -0.38 Total: -54.40 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.13 Total: 18.63 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -29.85 -7.41 -37.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306332476.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.766 kcal (2) G-P(sol) polarization free energy of solvation -29.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds