Wall clock time and date at job start Mon Mar 30 2020 02:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00253 * 2 1 4 4 H 1.48501 * 109.47334 * 271.31902 * 3 2 1 5 5 H 1.48500 * 109.47311 * 31.32346 * 3 2 1 6 6 H 1.48507 * 109.47248 * 151.31972 * 3 2 1 7 7 C 1.38815 * 119.99929 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99836 * 341.04662 * 7 2 1 9 9 N 1.36933 * 120.00107 * 160.77626 * 7 2 1 10 10 C 1.47276 * 121.20197 * 332.32282 * 9 7 2 11 11 C 1.53143 * 108.90424 * 230.93621 * 10 9 7 12 12 N 1.47065 * 109.82308 * 307.13579 * 11 10 9 13 13 C 1.46586 * 110.81485 * 62.26180 * 12 11 10 14 14 H 1.09000 * 109.34096 * 55.77142 * 13 12 11 15 15 C 1.52754 * 111.00769 * 176.48734 * 13 12 11 16 16 C 1.53167 * 108.98043 * 181.33747 * 15 13 12 17 17 C 1.52893 * 109.91600 * 300.51131 * 16 15 13 18 18 C 1.53166 * 109.90408 * 58.92840 * 17 16 15 19 19 C 1.46820 * 121.19720 * 152.03358 * 9 7 2 20 20 H 1.09000 * 109.56436 * 247.04663 * 19 9 7 21 21 H 0.97009 * 119.99705 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.56124 * 350.76007 * 10 9 7 23 23 H 1.08996 * 109.56534 * 111.10866 * 10 9 7 24 24 H 1.09003 * 109.41631 * 67.24888 * 11 10 9 25 25 H 1.09004 * 109.41153 * 187.03314 * 11 10 9 26 26 H 1.00900 * 111.00177 * 298.44632 * 12 11 10 27 27 H 1.09009 * 109.55250 * 301.18652 * 15 13 12 28 28 H 1.09001 * 109.55283 * 61.48292 * 15 13 12 29 29 H 1.08998 * 109.39292 * 60.64908 * 16 15 13 30 30 H 1.08998 * 109.39285 * 180.37509 * 16 15 13 31 31 H 1.08998 * 109.40077 * 179.06314 * 17 16 15 32 32 H 1.09003 * 109.39795 * 298.88572 * 17 16 15 33 33 H 1.08998 * 109.55267 * 60.30757 * 18 17 16 34 34 H 1.09005 * 109.55569 * 180.61724 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4699 2.0625 -1.3997 5 1 1.4620 2.6444 0.7278 6 1 3.5615 1.4322 0.6719 7 6 2.0102 -1.2022 -0.0005 8 1 1.5141 -2.1123 0.3029 9 7 3.3223 -1.2351 -0.3910 10 6 3.8596 -0.2494 -1.3443 11 6 4.5902 -0.9920 -2.4668 12 7 5.5803 -1.9151 -1.8921 13 6 4.9250 -2.9342 -1.0671 14 1 4.1743 -3.4532 -1.6631 15 6 5.9396 -3.9463 -0.5384 16 6 5.2029 -5.0055 0.2872 17 6 4.4732 -4.3409 1.4550 18 6 3.4759 -3.3060 0.9256 19 6 4.2457 -2.2505 0.1304 20 1 4.9988 -1.7720 0.7564 21 1 -0.4850 0.8401 -0.0004 22 1 3.0413 0.3347 -1.7653 23 1 4.5566 0.4127 -0.8307 24 1 3.8686 -1.5564 -3.0575 25 1 5.0968 -0.2709 -3.1083 26 1 6.2770 -1.4138 -1.3618 27 1 6.4478 -4.4249 -1.3756 28 1 6.6697 -3.4366 0.0902 29 1 4.4798 -5.5195 -0.3460 30 1 5.9219 -5.7279 0.6735 31 1 3.9387 -5.0995 2.0267 32 1 5.1987 -3.8455 2.1003 33 1 2.7443 -3.7988 0.2852 34 1 2.9670 -2.8282 1.7628 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306332476.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:39 Heat of formation + Delta-G solvation = -7.214276 kcal Electronic energy + Delta-G solvation = -15028.489825 eV Core-core repulsion = 12767.175543 eV Total energy + Delta-G solvation = -2261.314282 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.75678 -37.01258 -35.61725 -33.41698 -31.23716 -30.62437 -27.68877 -25.26926 -24.04292 -22.62006 -21.68540 -20.82011 -18.58227 -17.36678 -16.69958 -16.31857 -15.81640 -15.61125 -15.15795 -14.48814 -14.38307 -14.33179 -13.97033 -13.52000 -13.16082 -12.94550 -12.56600 -12.32429 -12.09665 -12.01916 -11.88562 -11.65048 -11.38726 -11.20621 -11.12801 -10.80820 -9.63999 -8.69751 -8.18216 -5.50470 1.23842 1.35015 1.43594 2.37757 2.96954 3.23301 3.29374 3.86539 4.08876 4.16296 4.21742 4.26052 4.30909 4.46982 4.49776 4.54812 4.65083 4.69293 4.81983 4.95043 5.06876 5.09250 5.18936 5.29875 5.30875 5.33805 5.49485 5.59078 5.83434 6.05755 6.12901 6.52263 6.86874 7.59337 8.00590 9.01527 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.037309 B = 0.012782 C = 0.010479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.311161 B = 2190.029002 C = 2671.292328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.038 4.038 3 Si 0.949 3.051 4 H -0.274 1.274 5 H -0.312 1.312 6 H -0.269 1.269 7 C -0.239 4.239 8 H 0.061 0.939 9 N -0.621 5.621 10 C 0.081 3.919 11 C 0.053 3.947 12 N -0.670 5.670 13 C 0.079 3.921 14 H 0.056 0.944 15 C -0.099 4.099 16 C -0.111 4.111 17 C -0.111 4.111 18 C -0.101 4.101 19 C 0.139 3.861 20 H 0.031 0.969 21 H 0.260 0.740 22 H 0.053 0.947 23 H 0.030 0.970 24 H 0.059 0.941 25 H 0.097 0.903 26 H 0.341 0.659 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.043 0.957 34 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.074 -6.480 -0.926 15.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.232 4.232 3 Si 0.779 3.221 4 H -0.201 1.201 5 H -0.241 1.241 6 H -0.194 1.194 7 C -0.368 4.368 8 H 0.078 0.922 9 N -0.347 5.347 10 C -0.045 4.045 11 C -0.078 4.078 12 N -0.297 5.297 13 C -0.032 4.032 14 H 0.074 0.926 15 C -0.137 4.137 16 C -0.149 4.149 17 C -0.149 4.149 18 C -0.139 4.139 19 C 0.033 3.967 20 H 0.049 0.951 21 H 0.069 0.931 22 H 0.071 0.929 23 H 0.047 0.953 24 H 0.077 0.923 25 H 0.116 0.884 26 H 0.159 0.841 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 13.982 -6.803 -1.506 15.622 hybrid contribution -0.889 1.787 0.918 2.197 sum 13.093 -5.016 -0.589 14.033 Atomic orbital electron populations 1.69949 1.07270 1.27016 1.56366 1.25900 0.95842 1.00813 1.00687 0.85887 0.78195 0.80470 0.77526 1.20074 1.24138 1.19386 1.18854 0.85777 0.93543 1.38663 0.92156 1.44656 1.07101 1.34216 1.48694 1.22158 0.97434 0.92754 0.92195 1.22324 0.94380 0.95416 0.95695 1.60880 1.14545 1.16009 1.38296 1.22000 0.95919 0.92930 0.92378 0.92585 1.21452 0.96807 0.95662 0.99763 1.21497 0.99451 0.97593 0.96366 1.21546 0.97694 0.97424 0.98245 1.21479 0.97800 0.96028 0.98635 1.21573 0.91449 0.89173 0.94505 0.95091 0.93077 0.92871 0.95264 0.92282 0.88435 0.84120 0.90248 0.91150 0.92556 0.89246 0.91023 0.91410 0.93825 0.94181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.31 13.97 21.65 0.30 -61.01 16 2 C -0.04 -2.27 5.27 84.86 0.45 -1.83 16 3 Si 0.95 47.81 24.31 68.60 1.67 49.48 16 4 H -0.27 -12.99 6.58 99.48 0.65 -12.34 16 5 H -0.31 -16.01 7.11 99.48 0.71 -15.31 16 6 H -0.27 -13.11 6.58 99.48 0.66 -12.45 16 7 C -0.24 -13.70 9.19 84.03 0.77 -12.93 16 8 H 0.06 3.75 6.51 -2.91 -0.02 3.74 16 9 N -0.62 -29.73 2.79 -673.83 -1.88 -31.61 16 10 C 0.08 3.46 4.33 86.28 0.37 3.84 16 11 C 0.05 1.83 6.67 86.32 0.58 2.40 16 12 N -0.67 -20.56 6.57 -490.78 -3.23 -23.79 16 13 C 0.08 2.57 2.31 45.13 0.10 2.67 16 14 H 0.06 2.09 8.12 -2.39 -0.02 2.07 16 15 C -0.10 -2.36 5.60 30.57 0.17 -2.19 16 16 C -0.11 -2.49 5.91 30.61 0.18 -2.31 16 17 C -0.11 -2.94 5.89 30.61 0.18 -2.76 16 18 C -0.10 -3.78 3.99 30.63 0.12 -3.66 16 19 C 0.14 5.42 2.81 45.15 0.13 5.55 16 20 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 21 H 0.26 15.85 8.31 -92.70 -0.77 15.08 16 22 H 0.05 2.52 4.70 -2.39 -0.01 2.51 16 23 H 0.03 1.22 6.89 -2.39 -0.02 1.21 16 24 H 0.06 2.21 8.13 -2.39 -0.02 2.19 16 25 H 0.10 2.77 8.14 -2.38 -0.02 2.75 16 26 H 0.34 9.45 8.81 -89.69 -0.79 8.66 16 27 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 28 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.04 1.79 7.66 -2.39 -0.02 1.77 16 34 H 0.04 1.70 7.61 -2.38 -0.02 1.68 16 Total: -1.00 -66.11 251.76 0.10 -66.02 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.18 Total: 12.12 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: 3.05 Total: -11.21 kcal Atomic # 7 Polarization: -111.61 SS G_CDS: -4.81 Total: -116.42 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 1.67 Total: 49.48 kcal Total: -66.11 0.10 -66.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306332476.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.804 kcal (2) G-P(sol) polarization free energy of solvation -66.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds