Wall clock time and date at job start Mon Mar 30 2020 02:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99763 * 2 1 4 4 H 1.48500 * 109.46984 * 179.72504 * 3 2 1 5 5 H 1.48499 * 109.47011 * 299.72589 * 3 2 1 6 6 H 1.48499 * 109.46897 * 59.72650 * 3 2 1 7 7 C 1.38812 * 120.00299 * 179.72779 * 2 1 3 8 8 H 1.08005 * 119.99629 * 197.82672 * 7 2 1 9 9 N 1.36931 * 120.00069 * 17.82253 * 7 2 1 10 10 C 1.43486 * 117.97248 * 210.23971 * 9 7 2 11 11 C 1.51585 * 111.91340 * 285.81047 * 10 9 7 12 12 C 1.54345 * 107.97517 * 296.08160 * 11 10 9 13 13 H 1.08993 * 112.51782 * 291.09443 * 12 11 10 14 14 C 1.53959 * 109.41138 * 165.71034 * 12 11 10 15 15 N 1.47716 * 107.11735 * 223.64991 * 14 12 11 16 16 C 1.48045 * 108.38096 * 358.89617 * 15 14 12 17 17 C 1.54614 * 104.62123 * 24.87781 * 16 15 14 18 18 H 1.08995 * 112.40941 * 82.93464 * 17 16 15 19 19 C 1.52661 * 109.94402 * 208.74569 * 17 16 15 20 20 C 1.47959 * 117.97570 * 30.50233 * 9 7 2 21 21 H 0.96995 * 120.00545 * 0.27895 * 1 2 3 22 22 H 1.09005 * 109.05162 * 46.17080 * 10 9 7 23 23 H 1.09005 * 109.04687 * 165.06058 * 10 9 7 24 24 H 1.09004 * 109.82291 * 176.45339 * 11 10 9 25 25 H 1.09000 * 109.79103 * 55.70091 * 11 10 9 26 26 H 1.09005 * 109.89950 * 104.28260 * 14 12 11 27 27 H 1.09000 * 109.90586 * 343.02768 * 14 12 11 28 28 H 1.00909 * 110.99492 * 121.03944 * 15 14 12 29 29 H 1.08993 * 110.40568 * 266.08995 * 16 15 14 30 30 H 1.09002 * 110.40757 * 143.65831 * 16 15 14 31 31 H 1.09007 * 109.94067 * 96.74830 * 19 17 16 32 32 H 1.08998 * 110.01482 * 335.54933 * 19 17 16 33 33 H 1.08996 * 111.24162 * 240.68818 * 20 9 7 34 34 H 1.09002 * 111.23924 * 5.13737 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0067 5 1 1.8964 2.3936 -1.2158 6 1 1.8863 2.3994 1.2091 7 6 2.0103 -1.2021 0.0057 8 1 3.0515 -1.2231 0.2922 9 7 1.3750 -2.3613 -0.3517 10 6 1.8190 -3.5854 0.2508 11 6 3.1442 -4.0492 -0.3207 12 6 2.9325 -4.3684 -1.8159 13 1 2.3104 -5.2499 -1.9705 14 6 4.3005 -4.4938 -2.5110 15 7 4.2035 -3.7706 -3.7953 16 6 2.8302 -3.2332 -3.9260 17 6 2.3244 -3.0970 -2.4713 18 1 2.6577 -2.1723 -2.0003 19 6 0.8061 -3.2512 -2.4313 20 6 0.2771 -2.2747 -1.3398 21 1 -0.4851 0.8399 -0.0041 22 1 1.9346 -3.4324 1.3239 23 1 1.0686 -4.3578 0.0817 24 1 3.4795 -4.9445 0.2030 25 1 3.8884 -3.2599 -0.2144 26 1 4.5295 -5.5439 -2.6927 27 1 5.0751 -4.0446 -1.8895 28 1 4.8878 -3.0306 -3.8462 29 1 2.2018 -3.9277 -4.4834 30 1 2.8481 -2.2591 -4.4148 31 1 0.5433 -4.2767 -2.1716 32 1 0.3792 -2.9922 -3.4002 33 1 -0.6635 -2.6273 -0.9169 34 1 0.1767 -1.2623 -1.7309 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306372322.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:09 Heat of formation + Delta-G solvation = 16.639393 kcal Electronic energy + Delta-G solvation = -15102.837808 eV Core-core repulsion = 12842.557899 eV Total energy + Delta-G solvation = -2260.279909 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.79187 -37.49721 -34.21480 -33.30890 -31.64713 -28.89366 -27.91989 -25.12397 -23.93148 -22.24260 -21.22555 -20.58100 -18.43231 -17.15519 -16.89444 -16.26389 -15.67802 -15.30712 -14.90752 -14.41602 -14.10891 -13.88142 -13.49590 -13.04561 -12.95128 -12.83300 -12.75571 -12.30216 -12.11825 -11.95424 -11.62415 -11.49986 -11.20231 -11.11709 -10.89229 -10.36192 -9.30952 -8.52460 -7.85832 -5.32128 1.42869 1.46457 1.54967 2.52003 3.28099 3.42576 3.67942 3.83268 3.95370 4.21758 4.43657 4.49788 4.58252 4.64311 4.71897 4.79328 4.87956 5.01077 5.05924 5.10780 5.16042 5.20407 5.24249 5.37568 5.42859 5.63425 5.69445 5.78459 5.94752 5.95147 6.46368 6.52579 7.20633 7.97893 8.35843 9.19074 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.034238 B = 0.011920 C = 0.011252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.603728 B = 2348.415838 C = 2487.835417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.045 4.045 3 Si 0.954 3.046 4 H -0.269 1.269 5 H -0.290 1.290 6 H -0.296 1.296 7 C -0.258 4.258 8 H 0.058 0.942 9 N -0.603 5.603 10 C 0.159 3.841 11 C -0.120 4.120 12 C -0.094 4.094 13 H 0.082 0.918 14 C 0.054 3.946 15 N -0.689 5.689 16 C 0.048 3.952 17 C -0.099 4.099 18 H 0.085 0.915 19 C -0.123 4.123 20 C 0.179 3.821 21 H 0.249 0.751 22 H 0.010 0.990 23 H 0.043 0.957 24 H 0.074 0.926 25 H 0.044 0.956 26 H 0.078 0.922 27 H 0.052 0.948 28 H 0.338 0.662 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.006 0.994 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.860 -7.553 -5.331 10.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.240 4.240 3 Si 0.783 3.217 4 H -0.194 1.194 5 H -0.217 1.217 6 H -0.223 1.223 7 C -0.389 4.389 8 H 0.076 0.924 9 N -0.325 5.325 10 C 0.032 3.968 11 C -0.160 4.160 12 C -0.113 4.113 13 H 0.100 0.900 14 C -0.075 4.075 15 N -0.316 5.316 16 C -0.082 4.082 17 C -0.119 4.119 18 H 0.104 0.896 19 C -0.162 4.162 20 C 0.055 3.945 21 H 0.058 0.942 22 H 0.028 0.972 23 H 0.061 0.939 24 H 0.093 0.907 25 H 0.063 0.937 26 H 0.096 0.904 27 H 0.071 0.929 28 H 0.153 0.847 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.024 0.976 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.652 -8.062 -5.735 11.395 hybrid contribution 0.003 1.931 1.018 2.183 sum 5.655 -6.131 -4.718 9.582 Atomic orbital electron populations 1.70175 1.06545 1.25629 1.55548 1.25670 0.95784 1.01094 1.01497 0.85416 0.78777 0.80837 0.76687 1.19361 1.21704 1.22315 1.19403 0.92995 0.86642 1.39826 0.92427 1.44011 1.38129 1.02654 1.47738 1.19837 0.94943 0.87866 0.94134 1.22056 0.98605 0.99777 0.95569 1.22800 0.96478 0.97066 0.94963 0.89976 1.22691 0.96516 0.99409 0.88913 1.62009 1.05265 1.30211 1.34123 1.23039 0.89998 0.98593 0.96554 1.22820 0.95325 0.99150 0.94588 0.89649 1.22702 0.95748 0.99154 0.98630 1.21583 0.87676 0.97627 0.87632 0.94204 0.97154 0.93869 0.90749 0.93696 0.90409 0.92949 0.84652 0.90814 0.92158 0.92489 0.92611 0.97591 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.43 11.24 21.65 0.24 -54.19 16 2 C -0.04 -2.47 4.80 84.86 0.41 -2.06 16 3 Si 0.95 44.52 29.59 68.60 2.03 46.55 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 7 C -0.26 -13.73 7.67 84.03 0.64 -13.09 16 8 H 0.06 3.07 7.43 -2.91 -0.02 3.05 16 9 N -0.60 -29.04 1.63 -703.01 -1.14 -30.18 16 10 C 0.16 6.52 5.23 86.47 0.45 6.98 16 11 C -0.12 -4.04 5.15 30.59 0.16 -3.88 16 12 C -0.09 -2.91 2.81 -9.18 -0.03 -2.94 16 13 H 0.08 2.44 7.41 -2.39 -0.02 2.42 16 14 C 0.05 1.48 7.17 86.47 0.62 2.10 16 15 N -0.69 -19.35 7.42 -504.49 -3.74 -23.10 16 16 C 0.05 1.44 6.83 86.63 0.59 2.04 16 17 C -0.10 -3.51 2.36 -9.52 -0.02 -3.53 16 18 H 0.09 3.75 5.38 -2.39 -0.01 3.74 16 19 C -0.12 -4.54 5.27 31.42 0.17 -4.38 16 20 C 0.18 8.45 5.81 87.03 0.51 8.96 16 21 H 0.25 14.12 8.31 -92.71 -0.77 13.34 16 22 H 0.01 0.45 8.10 -2.38 -0.02 0.43 16 23 H 0.04 1.66 7.72 -2.38 -0.02 1.65 16 24 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.04 1.66 7.25 -2.39 -0.02 1.64 16 26 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 27 H 0.05 1.41 7.53 -2.39 -0.02 1.40 16 28 H 0.34 8.81 8.91 -89.69 -0.80 8.02 16 29 H 0.07 2.15 7.93 -2.39 -0.02 2.13 16 30 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.06 1.96 6.89 -2.38 -0.02 1.94 16 32 H 0.06 1.90 7.79 -2.39 -0.02 1.88 16 33 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.06 3.23 6.09 -2.39 -0.01 3.22 16 Total: -1.00 -58.35 253.61 1.16 -57.19 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.28 Total: 13.54 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: 3.50 Total: -9.81 kcal Atomic # 7 Polarization: -102.82 SS G_CDS: -4.64 Total: -107.46 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -58.35 1.16 -57.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306372322.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.826 kcal (2) G-P(sol) polarization free energy of solvation -58.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds