Wall clock time and date at job start Mon Mar 30 2020 02:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99929 * 2 1 4 4 H 1.48505 * 109.46778 * 180.27854 * 3 2 1 5 5 H 1.48503 * 109.47064 * 300.27443 * 3 2 1 6 6 H 1.48498 * 109.47194 * 60.27826 * 3 2 1 7 7 C 1.38810 * 119.99817 * 180.27395 * 2 1 3 8 8 H 1.08004 * 120.00209 * 161.59138 * 7 2 1 9 9 N 1.36943 * 120.00098 * 341.59855 * 7 2 1 10 10 C 1.43487 * 117.89379 * 149.50533 * 9 7 2 11 11 C 1.52688 * 111.25810 * 74.61944 * 10 9 7 12 12 C 1.54255 * 108.02405 * 63.61740 * 11 10 9 13 13 H 1.09004 * 112.23819 * 68.33631 * 12 11 10 14 14 C 1.53746 * 109.83002 * 193.50912 * 12 11 10 15 15 N 1.47576 * 107.26306 * 135.67939 * 14 12 11 16 16 C 1.47969 * 108.56368 * 1.09332 * 15 14 12 17 17 C 1.54348 * 104.91046 * 336.26476 * 16 15 14 18 18 H 1.09000 * 112.10684 * 275.53393 * 17 16 15 19 19 C 1.52632 * 110.37721 * 149.96287 * 17 16 15 20 20 C 1.47984 * 117.89247 * 329.76124 * 9 7 2 21 21 H 0.97007 * 120.00062 * 359.72106 * 1 2 3 22 22 H 1.09005 * 109.06051 * 194.93808 * 10 9 7 23 23 H 1.08997 * 109.06338 * 313.86977 * 10 9 7 24 24 H 1.09001 * 109.75991 * 303.96112 * 11 10 9 25 25 H 1.08998 * 109.73137 * 183.26167 * 11 10 9 26 26 H 1.09000 * 109.88961 * 16.26771 * 14 12 11 27 27 H 1.08993 * 110.01526 * 255.16291 * 14 12 11 28 28 H 1.00898 * 111.00187 * 238.83162 * 15 14 12 29 29 H 1.09000 * 110.35283 * 217.40106 * 16 15 14 30 30 H 1.09006 * 110.34829 * 95.11678 * 16 15 14 31 31 H 1.09004 * 109.97891 * 23.69255 * 19 17 16 32 32 H 1.09005 * 110.04756 * 262.40511 * 19 17 16 33 33 H 1.08996 * 111.24167 * 354.95029 * 20 9 7 34 34 H 1.08995 * 111.23787 * 119.39536 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 -0.0068 5 1 1.8864 2.3994 -1.2092 6 1 1.8965 2.3935 1.2159 7 6 2.0102 -1.2021 -0.0057 8 1 3.0488 -1.2247 -0.3012 9 7 1.3780 -2.3596 0.3631 10 6 1.8143 -3.5851 -0.2424 11 6 3.1513 -4.0429 0.3358 12 6 2.9442 -4.3480 1.8336 13 1 2.3163 -5.2247 1.9931 14 6 4.3073 -4.4839 2.5315 15 7 4.2252 -3.7376 3.8020 16 6 2.8641 -3.1712 3.9285 17 6 2.3384 -3.0736 2.4806 18 1 2.6617 -2.1567 1.9878 19 6 0.8205 -3.2313 2.4545 20 6 0.2849 -2.2651 1.3562 21 1 -0.4850 0.8401 0.0041 22 1 1.0660 -4.3571 -0.0626 23 1 1.9174 -3.4343 -1.3169 24 1 3.8929 -3.2526 0.2197 25 1 3.4869 -4.9421 -0.1807 26 1 5.0899 -4.0598 1.9024 27 1 4.5209 -5.5338 2.7316 28 1 4.9242 -3.0109 3.8403 29 1 2.9060 -2.1819 4.3842 30 1 2.2308 -3.8345 4.5178 31 1 0.4013 -2.9620 3.4240 32 1 0.5558 -4.2594 2.2073 33 1 0.1853 -1.2492 1.7384 34 1 -0.6575 -2.6226 0.9413 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306372323.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:13 Heat of formation + Delta-G solvation = 33.559243 kcal Electronic energy + Delta-G solvation = -15103.249164 eV Core-core repulsion = 12843.702955 eV Total energy + Delta-G solvation = -2259.546209 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.28186 -35.86356 -32.40436 -31.66310 -29.98153 -27.46861 -26.10717 -23.34732 -22.34267 -20.85125 -19.65628 -18.97350 -16.53839 -15.70426 -15.23066 -14.58868 -13.86520 -13.63222 -13.38700 -12.85941 -12.59425 -12.37067 -11.84337 -11.48714 -11.36433 -11.09817 -10.86463 -10.73040 -10.39750 -10.13027 -10.05311 -9.76778 -9.60891 -9.49985 -9.35039 -8.35281 -8.04712 -6.56424 -5.81620 -3.26121 3.33976 3.43133 3.44321 4.49359 4.69042 5.18297 5.26684 5.37326 5.46173 5.63574 5.83479 5.95084 6.08216 6.09315 6.15393 6.22757 6.33362 6.42452 6.55332 6.61594 6.69809 6.76484 6.83678 6.92591 7.03615 7.21360 7.37502 7.49414 7.63525 7.72472 7.81531 8.50280 9.22860 9.91118 10.34816 11.25216 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.034151 B = 0.011964 C = 0.011271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.699481 B = 2339.785738 C = 2483.734065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.007 3.993 3 Si 0.894 3.106 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.264 4.264 8 H 0.063 0.937 9 N -0.594 5.594 10 C 0.163 3.837 11 C -0.132 4.132 12 C -0.098 4.098 13 H 0.070 0.930 14 C 0.051 3.949 15 N -0.690 5.690 16 C 0.041 3.959 17 C -0.099 4.099 18 H 0.123 0.877 19 C -0.138 4.138 20 C 0.178 3.822 21 H 0.253 0.747 22 H 0.033 0.967 23 H 0.028 0.972 24 H 0.060 0.940 25 H 0.045 0.955 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.331 0.669 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.042 0.958 32 H 0.044 0.956 33 H 0.091 0.909 34 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.533 -6.202 4.438 8.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.192 4.192 3 Si 0.724 3.276 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.215 1.215 7 C -0.393 4.393 8 H 0.080 0.920 9 N -0.315 5.315 10 C 0.035 3.965 11 C -0.172 4.172 12 C -0.118 4.118 13 H 0.088 0.912 14 C -0.079 4.079 15 N -0.318 5.318 16 C -0.088 4.088 17 C -0.118 4.118 18 H 0.141 0.859 19 C -0.177 4.177 20 C 0.054 3.946 21 H 0.063 0.937 22 H 0.051 0.949 23 H 0.046 0.954 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.146 0.854 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.109 0.891 34 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 4.285 -6.676 4.850 9.298 hybrid contribution 0.436 1.571 -0.721 1.783 sum 4.720 -5.106 4.130 8.087 Atomic orbital electron populations 1.70057 1.05307 1.25434 1.53542 1.25041 0.95117 0.98392 1.00692 0.86357 0.79536 0.84376 0.77314 1.20292 1.21770 1.21539 1.19228 0.93356 0.85677 1.41085 0.91974 1.43882 1.38758 1.02307 1.46573 1.19922 0.92978 0.88710 0.94923 1.22389 1.01193 0.99240 0.94414 1.22716 0.95387 0.97752 0.95913 0.91151 1.22620 0.97621 0.98284 0.89346 1.61877 1.05528 1.29222 1.35126 1.23055 0.89594 0.97891 0.98254 1.22938 0.95817 1.00033 0.93044 0.85904 1.22877 0.95314 0.99888 0.99654 1.21809 0.88261 0.98310 0.86252 0.93675 0.94895 0.95356 0.92130 0.93629 0.93340 0.92057 0.85411 0.92381 0.91736 0.93974 0.93749 0.89057 0.95800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.54 11.26 55.49 0.62 -24.91 16 2 C 0.01 0.18 4.78 -17.43 -0.08 0.09 16 3 Si 0.89 21.30 29.59 -169.99 -5.03 16.27 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 7 C -0.26 -6.94 7.62 -15.06 -0.11 -7.05 16 8 H 0.06 1.64 7.43 -52.48 -0.39 1.25 16 9 N -0.59 -14.20 1.60 -172.82 -0.28 -14.48 16 10 C 0.16 3.40 5.34 -5.80 -0.03 3.37 16 11 C -0.13 -2.37 5.17 -26.23 -0.14 -2.50 16 12 C -0.10 -1.68 2.80 -88.39 -0.25 -1.93 16 13 H 0.07 1.19 7.38 -51.93 -0.38 0.81 16 14 C 0.05 0.78 7.18 -3.06 -0.02 0.76 16 15 N -0.69 -10.81 7.40 -111.25 -0.82 -11.63 16 16 C 0.04 0.68 6.87 -2.53 -0.02 0.67 16 17 C -0.10 -1.84 2.35 -88.92 -0.21 -2.05 16 18 H 0.12 2.74 5.27 -51.93 -0.27 2.47 16 19 C -0.14 -2.64 5.31 -25.44 -0.14 -2.78 16 20 C 0.18 4.14 5.82 -1.74 -0.01 4.13 16 21 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 22 H 0.03 0.66 7.76 -51.93 -0.40 0.25 16 23 H 0.03 0.62 8.10 -51.93 -0.42 0.20 16 24 H 0.06 1.17 7.29 -51.93 -0.38 0.79 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.73 7.56 -51.93 -0.39 0.34 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.33 4.78 8.91 -39.29 -0.35 4.43 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 1.05 7.90 -51.93 -0.41 0.64 16 31 H 0.04 0.75 7.78 -51.93 -0.40 0.35 16 32 H 0.04 0.82 6.91 -51.93 -0.36 0.46 16 33 H 0.09 2.36 6.08 -51.93 -0.32 2.04 16 34 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 253.67 15.07 3.82 3.82 Total: -1.00 -27.36 253.67 -8.00 -35.35 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -5.31 Total: 2.85 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -1.01 Total: -7.28 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: -0.48 Total: -51.03 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -27.36 -8.00 -35.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306372323.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.913 kcal (2) G-P(sol) polarization free energy of solvation -27.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds