Wall clock time and date at job start Mon Mar 30 2020 02:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99929 * 2 1 4 4 H 1.48505 * 109.46778 * 180.27854 * 3 2 1 5 5 H 1.48503 * 109.47064 * 300.27443 * 3 2 1 6 6 H 1.48498 * 109.47194 * 60.27826 * 3 2 1 7 7 C 1.38810 * 119.99817 * 180.27395 * 2 1 3 8 8 H 1.08004 * 120.00209 * 161.59138 * 7 2 1 9 9 N 1.36943 * 120.00098 * 341.59855 * 7 2 1 10 10 C 1.43487 * 117.89379 * 149.50533 * 9 7 2 11 11 C 1.52688 * 111.25810 * 74.61944 * 10 9 7 12 12 C 1.54255 * 108.02405 * 63.61740 * 11 10 9 13 13 H 1.09004 * 112.23819 * 68.33631 * 12 11 10 14 14 C 1.53746 * 109.83002 * 193.50912 * 12 11 10 15 15 N 1.47576 * 107.26306 * 135.67939 * 14 12 11 16 16 C 1.47969 * 108.56368 * 1.09332 * 15 14 12 17 17 C 1.54348 * 104.91046 * 336.26476 * 16 15 14 18 18 H 1.09000 * 112.10684 * 275.53393 * 17 16 15 19 19 C 1.52632 * 110.37721 * 149.96287 * 17 16 15 20 20 C 1.47984 * 117.89247 * 329.76124 * 9 7 2 21 21 H 0.97007 * 120.00062 * 359.72106 * 1 2 3 22 22 H 1.09005 * 109.06051 * 194.93808 * 10 9 7 23 23 H 1.08997 * 109.06338 * 313.86977 * 10 9 7 24 24 H 1.09001 * 109.75991 * 303.96112 * 11 10 9 25 25 H 1.08998 * 109.73137 * 183.26167 * 11 10 9 26 26 H 1.09000 * 109.88961 * 16.26771 * 14 12 11 27 27 H 1.08993 * 110.01526 * 255.16291 * 14 12 11 28 28 H 1.00898 * 111.00187 * 238.83162 * 15 14 12 29 29 H 1.09000 * 110.35283 * 217.40106 * 16 15 14 30 30 H 1.09006 * 110.34829 * 95.11678 * 16 15 14 31 31 H 1.09004 * 109.97891 * 23.69255 * 19 17 16 32 32 H 1.09005 * 110.04756 * 262.40511 * 19 17 16 33 33 H 1.08996 * 111.24167 * 354.95029 * 20 9 7 34 34 H 1.08995 * 111.23787 * 119.39536 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 -0.0068 5 1 1.8864 2.3994 -1.2092 6 1 1.8965 2.3935 1.2159 7 6 2.0102 -1.2021 -0.0057 8 1 3.0488 -1.2247 -0.3012 9 7 1.3780 -2.3596 0.3631 10 6 1.8143 -3.5851 -0.2424 11 6 3.1513 -4.0429 0.3358 12 6 2.9442 -4.3480 1.8336 13 1 2.3163 -5.2247 1.9931 14 6 4.3073 -4.4839 2.5315 15 7 4.2252 -3.7376 3.8020 16 6 2.8641 -3.1712 3.9285 17 6 2.3384 -3.0736 2.4806 18 1 2.6617 -2.1567 1.9878 19 6 0.8205 -3.2313 2.4545 20 6 0.2849 -2.2651 1.3562 21 1 -0.4850 0.8401 0.0041 22 1 1.0660 -4.3571 -0.0626 23 1 1.9174 -3.4343 -1.3169 24 1 3.8929 -3.2526 0.2197 25 1 3.4869 -4.9421 -0.1807 26 1 5.0899 -4.0598 1.9024 27 1 4.5209 -5.5338 2.7316 28 1 4.9242 -3.0109 3.8403 29 1 2.9060 -2.1819 4.3842 30 1 2.2308 -3.8345 4.5178 31 1 0.4013 -2.9620 3.4240 32 1 0.5558 -4.2594 2.2073 33 1 0.1853 -1.2492 1.7384 34 1 -0.6575 -2.6226 0.9413 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306372323.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:12 Heat of formation + Delta-G solvation = 16.419516 kcal Electronic energy + Delta-G solvation = -15103.992398 eV Core-core repulsion = 12843.702955 eV Total energy + Delta-G solvation = -2260.289443 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.78197 -37.49768 -34.18993 -33.28704 -31.65943 -28.90916 -27.90968 -25.11889 -23.95320 -22.25433 -21.22575 -20.57106 -18.43326 -17.15467 -16.89998 -16.26436 -15.67204 -15.29701 -14.90654 -14.38980 -14.12008 -13.89403 -13.49064 -13.04993 -12.95224 -12.84012 -12.74702 -12.31225 -12.11480 -11.95367 -11.62239 -11.46740 -11.20119 -11.13081 -10.90663 -10.35226 -9.30801 -8.52281 -7.85853 -5.32226 1.42842 1.46530 1.55021 2.52046 3.27649 3.43375 3.68069 3.83757 3.95031 4.21916 4.43904 4.49414 4.58971 4.64738 4.72148 4.79730 4.87382 4.99924 5.06726 5.10673 5.16661 5.20947 5.23299 5.38147 5.43240 5.63379 5.69440 5.78549 5.95950 5.96800 6.46303 6.53012 7.20394 7.97791 8.35419 9.18598 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.034151 B = 0.011964 C = 0.011271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.699481 B = 2339.785738 C = 2483.734065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.045 4.045 3 Si 0.953 3.047 4 H -0.269 1.269 5 H -0.296 1.296 6 H -0.290 1.290 7 C -0.258 4.258 8 H 0.058 0.942 9 N -0.603 5.603 10 C 0.158 3.842 11 C -0.119 4.119 12 C -0.093 4.093 13 H 0.080 0.920 14 C 0.055 3.945 15 N -0.689 5.689 16 C 0.048 3.952 17 C -0.100 4.100 18 H 0.086 0.914 19 C -0.122 4.122 20 C 0.179 3.821 21 H 0.249 0.751 22 H 0.043 0.957 23 H 0.012 0.988 24 H 0.044 0.956 25 H 0.073 0.927 26 H 0.052 0.948 27 H 0.078 0.922 28 H 0.339 0.661 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.911 -7.476 5.329 10.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.240 4.240 3 Si 0.782 3.218 4 H -0.194 1.194 5 H -0.223 1.223 6 H -0.217 1.217 7 C -0.389 4.389 8 H 0.076 0.924 9 N -0.325 5.325 10 C 0.031 3.969 11 C -0.159 4.159 12 C -0.112 4.112 13 H 0.098 0.902 14 C -0.074 4.074 15 N -0.316 5.316 16 C -0.081 4.081 17 C -0.120 4.120 18 H 0.104 0.896 19 C -0.162 4.162 20 C 0.055 3.945 21 H 0.058 0.942 22 H 0.061 0.939 23 H 0.030 0.970 24 H 0.063 0.937 25 H 0.092 0.908 26 H 0.070 0.930 27 H 0.096 0.904 28 H 0.154 0.846 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 5.693 -7.975 5.744 11.358 hybrid contribution 0.000 1.915 -1.034 2.177 sum 5.692 -6.060 4.710 9.556 Atomic orbital electron populations 1.70185 1.06557 1.25643 1.55468 1.25668 0.95768 1.01113 1.01481 0.85422 0.78797 0.80846 0.76688 1.19358 1.22323 1.21696 1.19407 0.93208 0.86728 1.39574 0.92400 1.44073 1.38659 1.02682 1.47103 1.20072 0.94898 0.87818 0.94082 1.22206 0.98545 0.99739 0.95434 1.22686 0.96499 0.97065 0.94978 0.90173 1.22605 0.96524 0.99247 0.89069 1.61909 1.05148 1.29429 1.35132 1.22958 0.90155 0.98360 0.96629 1.22739 0.95294 0.99298 0.94654 0.89563 1.22703 0.95724 0.99152 0.98594 1.21605 0.87697 0.97695 0.87548 0.94197 0.93879 0.96976 0.93720 0.90826 0.92964 0.90418 0.84615 0.92228 0.90911 0.92619 0.92495 0.92089 0.97595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.36 11.26 21.65 0.24 -54.12 16 2 C -0.04 -2.45 4.78 84.86 0.41 -2.05 16 3 Si 0.95 44.48 29.59 68.60 2.03 46.51 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 6 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 7 C -0.26 -13.75 7.62 84.03 0.64 -13.11 16 8 H 0.06 3.08 7.43 -2.91 -0.02 3.06 16 9 N -0.60 -29.00 1.60 -700.67 -1.12 -30.13 16 10 C 0.16 6.49 5.34 86.83 0.46 6.95 16 11 C -0.12 -4.01 5.17 30.92 0.16 -3.85 16 12 C -0.09 -2.90 2.80 -9.35 -0.03 -2.93 16 13 H 0.08 2.40 7.38 -2.38 -0.02 2.38 16 14 C 0.05 1.50 7.18 86.42 0.62 2.12 16 15 N -0.69 -19.39 7.40 -505.89 -3.74 -23.14 16 16 C 0.05 1.48 6.87 86.55 0.59 2.07 16 17 C -0.10 -3.56 2.35 -9.69 -0.02 -3.58 16 18 H 0.09 3.80 5.27 -2.39 -0.01 3.79 16 19 C -0.12 -4.53 5.31 31.43 0.17 -4.36 16 20 C 0.18 8.44 5.82 87.06 0.51 8.95 16 21 H 0.25 14.11 8.31 -92.70 -0.77 13.34 16 22 H 0.04 1.66 7.76 -2.38 -0.02 1.64 16 23 H 0.01 0.53 8.10 -2.39 -0.02 0.51 16 24 H 0.04 1.65 7.29 -2.39 -0.02 1.64 16 25 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.05 1.40 7.56 -2.39 -0.02 1.39 16 27 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.34 8.81 8.91 -89.70 -0.80 8.01 16 29 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.07 2.13 7.90 -2.38 -0.02 2.11 16 31 H 0.06 1.90 7.78 -2.39 -0.02 1.88 16 32 H 0.06 1.96 6.91 -2.38 -0.02 1.95 16 33 H 0.06 3.25 6.08 -2.39 -0.01 3.23 16 34 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 Total: -1.00 -58.25 253.67 1.19 -57.06 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.28 Total: 13.59 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: 3.51 Total: -9.78 kcal Atomic # 7 Polarization: -102.75 SS G_CDS: -4.62 Total: -107.38 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -58.25 1.19 -57.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306372323.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.478 kcal (2) G-P(sol) polarization free energy of solvation -58.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds