Wall clock time and date at job start Mon Mar 30 2020 03:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47310 * 2 1 4 4 C 1.50702 * 109.47146 * 119.99587 * 2 1 3 5 5 H 1.08009 * 119.99994 * 120.00140 * 4 2 1 6 6 C 1.37874 * 120.00021 * 299.99868 * 4 2 1 7 7 N 1.31510 * 120.00110 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99846 * 179.97438 * 6 4 2 9 9 H 1.48491 * 109.47144 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46897 * 120.00459 * 8 6 4 11 11 H 1.48502 * 109.46884 * 239.99908 * 8 6 4 12 12 N 1.46497 * 109.47263 * 239.99639 * 2 1 3 13 13 N 1.40098 * 119.99865 * 89.99961 * 12 2 1 14 14 C 1.28014 * 119.99724 * 180.02562 * 13 12 2 15 15 C 1.51585 * 135.78063 * 179.97438 * 14 13 12 16 16 C 1.53840 * 86.75720 * 205.15282 * 15 14 13 17 17 C 1.52997 * 113.65924 * 89.68658 * 16 15 14 18 18 C 1.53002 * 113.65597 * 220.64017 * 16 15 14 19 19 C 1.51872 * 135.78934 * 359.97438 * 14 13 12 20 20 H 1.08995 * 109.47242 * 60.00061 * 1 2 3 21 21 H 1.09004 * 109.47131 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47150 * 300.00140 * 1 2 3 23 23 H 0.97009 * 120.00147 * 180.02562 * 7 6 4 24 24 H 0.97001 * 120.00120 * 270.00095 * 12 2 1 25 25 H 1.09001 * 113.66537 * 90.68499 * 15 14 13 26 26 H 1.09003 * 113.75072 * 319.62775 * 15 14 13 27 27 H 1.09002 * 109.47153 * 181.66495 * 17 16 15 28 28 H 1.09001 * 109.46832 * 61.66686 * 17 16 15 29 29 H 1.09004 * 109.47261 * 301.66667 * 17 16 15 30 30 H 1.08997 * 109.46683 * 298.33332 * 18 16 15 31 31 H 1.09000 * 109.46786 * 58.33451 * 18 16 15 32 32 H 1.08997 * 109.46688 * 178.33420 * 18 16 15 33 33 H 1.08997 * 113.75932 * 40.41677 * 19 14 13 34 34 H 1.09003 * 113.66326 * 269.25709 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2392 2.4827 7 7 0.9428 0.8298 2.6034 8 14 2.3214 -1.1201 4.0080 9 1 3.1464 -2.2868 3.6039 10 1 3.1466 -0.1870 4.8166 11 1 1.1661 -1.5863 4.8162 12 7 2.0183 -0.6907 -1.1961 13 7 2.2518 0.0298 -2.3747 14 6 2.6781 -0.5738 -3.4200 15 6 3.0397 -0.1706 -4.8358 16 6 2.7264 -1.6226 -5.2361 17 6 1.2652 -1.8497 -5.6286 18 6 3.7124 -2.2062 -6.2501 19 6 3.0408 -2.0042 -3.7793 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 0.7088 1.1615 3.4844 24 1 2.1800 -1.6468 -1.1720 25 1 4.0881 0.1008 -4.9593 26 1 2.3583 0.5601 -5.2718 27 1 1.1130 -2.9018 -5.8697 28 1 1.0235 -1.2389 -6.4984 29 1 0.6180 -1.5702 -4.7971 30 1 3.6729 -1.6249 -7.1713 31 1 4.7213 -2.1680 -5.8393 32 1 3.4453 -3.2415 -6.4621 33 1 2.3596 -2.7473 -3.3648 34 1 4.0896 -2.2460 -3.6070 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306539338.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:20 Heat of formation + Delta-G solvation = 27.699371 kcal Electronic energy + Delta-G solvation = -13730.052911 eV Core-core repulsion = 11470.252598 eV Total energy + Delta-G solvation = -2259.800312 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.45509 -37.52535 -35.35874 -32.96286 -30.40238 -28.25439 -28.00510 -27.25477 -26.72687 -22.42384 -20.86098 -19.23934 -18.35289 -17.04867 -16.95272 -15.99420 -15.70005 -14.96249 -14.79504 -14.42649 -14.16981 -13.72435 -13.34334 -13.11420 -12.88005 -12.82223 -12.70258 -12.57206 -12.30688 -12.15405 -12.11183 -11.69440 -11.61403 -11.12507 -11.06418 -10.59478 -10.38661 -8.53071 -8.18520 -6.36044 1.41167 1.41401 1.53990 1.60239 2.17476 2.45965 3.09667 3.54428 3.57658 4.08953 4.23689 4.38854 4.45047 4.72520 4.76664 4.81515 4.91887 4.94191 4.98914 5.00226 5.11537 5.14030 5.21334 5.26103 5.35317 5.45897 5.59860 5.62276 5.81921 5.95314 6.27445 6.45636 6.87125 7.36187 7.94277 8.86789 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.056931 B = 0.006096 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.701804 B = 4591.944219 C = 4798.498693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.309 3.691 3 H -0.004 1.004 4 C -0.546 4.546 5 H 0.058 0.942 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.973 3.027 9 H -0.268 1.268 10 H -0.278 1.278 11 H -0.275 1.275 12 N -0.653 5.653 13 N -0.249 5.249 14 C -0.018 4.018 15 C -0.048 4.048 16 C -0.065 4.065 17 C -0.127 4.127 18 C -0.128 4.128 19 C -0.116 4.116 20 H 0.015 0.985 21 H 0.028 0.972 22 H 0.069 0.931 23 H 0.267 0.733 24 H 0.368 0.632 25 H 0.113 0.887 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.029 0.971 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.068 -6.410 -15.289 17.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.205 3.795 3 H 0.014 0.986 4 C -0.586 4.586 5 H 0.076 0.924 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.797 3.203 9 H -0.192 1.192 10 H -0.204 1.204 11 H -0.200 1.200 12 N -0.389 5.389 13 N -0.055 5.055 14 C -0.214 4.214 15 C -0.088 4.088 16 C -0.066 4.066 17 C -0.184 4.184 18 C -0.185 4.185 19 C -0.157 4.157 20 H 0.034 0.966 21 H 0.047 0.953 22 H 0.087 0.913 23 H 0.076 0.924 24 H 0.204 0.796 25 H 0.131 0.869 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.630 -5.255 -14.605 15.941 hybrid contribution 0.216 -1.183 1.098 1.628 sum 3.847 -6.438 -13.507 15.450 Atomic orbital electron populations 1.22013 0.99075 0.98840 0.99448 1.18055 0.90110 0.91370 0.79977 0.98622 1.21543 1.32389 1.13369 0.91252 0.92376 1.25744 0.94863 0.95666 1.01977 1.70031 1.36924 1.23810 1.24628 0.85290 0.78187 0.78405 0.78381 1.19198 1.20384 1.20006 1.48232 1.76789 1.07269 1.06644 1.73215 1.11635 1.26997 0.93629 1.26346 1.02242 0.97791 0.95052 1.22306 1.02705 0.97529 0.86263 1.21513 0.96796 0.94819 0.93441 1.21567 0.93396 1.02507 1.00923 1.21674 0.97649 1.01077 0.98097 1.22886 1.01936 0.93683 0.97183 0.96630 0.95299 0.91268 0.92372 0.79556 0.86945 0.90217 0.91160 0.90675 0.95181 0.90914 0.91918 0.91734 0.92319 0.88086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.15 9.29 71.98 0.67 -6.48 16 2 C 0.31 17.18 3.23 44.25 0.14 17.32 16 3 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 4 C -0.55 -31.09 8.74 25.60 0.22 -30.87 16 5 H 0.06 3.23 7.79 -2.91 -0.02 3.21 16 6 C 0.02 0.98 5.30 84.65 0.45 1.43 16 7 N -0.92 -53.33 11.32 21.45 0.24 -53.08 16 8 Si 0.97 43.62 29.54 68.60 2.03 45.64 16 9 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 10 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 12 N -0.65 -31.80 6.09 -172.52 -1.05 -32.85 16 13 N -0.25 -11.17 11.50 -39.75 -0.46 -11.63 16 14 C -0.02 -0.62 7.88 47.13 0.37 -0.24 16 15 C -0.05 -1.16 7.21 30.41 0.22 -0.94 16 16 C -0.06 -1.33 1.40 -51.67 -0.07 -1.40 16 17 C -0.13 -2.59 9.07 71.98 0.65 -1.93 16 18 C -0.13 -1.83 9.18 71.98 0.66 -1.17 16 19 C -0.12 -3.11 6.86 30.51 0.21 -2.90 16 20 H 0.01 0.76 8.14 -2.39 -0.02 0.74 16 21 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16 22 H 0.07 3.93 6.07 -2.39 -0.01 3.91 16 23 H 0.27 14.55 8.31 -92.70 -0.77 13.78 16 24 H 0.37 16.88 8.31 -213.32 -1.77 15.10 16 25 H 0.11 2.26 8.10 -2.39 -0.02 2.24 16 26 H 0.08 1.85 8.10 -2.39 -0.02 1.83 16 27 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.03 0.78 7.70 -2.38 -0.02 0.76 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.85 7.98 -2.39 -0.02 0.84 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 1.67 8.10 -2.39 -0.02 1.65 16 34 H 0.10 2.45 7.99 -2.39 -0.02 2.43 16 Total: -1.00 -64.57 283.37 3.58 -60.99 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -0.71 Total: 18.11 kcal Atomic # 6 Polarization: -30.71 SS G_CDS: 3.53 Total: -27.19 kcal Atomic # 7 Polarization: -96.29 SS G_CDS: -1.27 Total: -97.56 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -64.57 3.58 -60.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306539338.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.689 kcal (2) G-P(sol) polarization free energy of solvation -64.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds