Wall clock time and date at job start Mon Mar 30 2020 03:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.78493 * 2 1 4 4 C 1.53819 * 109.78936 * 239.21627 * 2 1 3 5 5 N 1.46849 * 109.80506 * 189.19711 * 4 2 1 6 6 C 1.36949 * 120.21569 * 226.98809 * 5 4 2 7 7 H 1.07998 * 119.99869 * 153.55679 * 6 5 4 8 8 C 1.38812 * 119.99841 * 333.55487 * 6 5 4 9 9 N 1.31625 * 120.00123 * 343.34780 * 8 6 5 10 10 Si 1.86795 * 119.99726 * 163.35456 * 8 6 5 11 11 H 1.48495 * 109.47472 * 94.40700 * 10 8 6 12 12 H 1.48504 * 109.47038 * 214.40868 * 10 8 6 13 13 H 1.48500 * 109.47064 * 334.40588 * 10 8 6 14 14 C 1.47655 * 119.56695 * 47.00863 * 5 4 2 15 15 C 1.52656 * 106.69518 * 309.75319 * 14 5 4 16 16 H 1.08996 * 111.09724 * 295.27722 * 15 14 5 17 17 C 1.53988 * 112.85128 * 169.63748 * 15 14 5 18 18 C 1.55286 * 102.14012 * 205.46857 * 17 15 14 19 19 C 1.54753 * 105.00551 * 22.20348 * 18 17 15 20 20 N 1.45650 * 109.83713 * 120.82324 * 2 1 3 21 21 H 1.09001 * 109.46943 * 180.78625 * 1 2 3 22 22 H 1.08999 * 109.46431 * 300.78192 * 1 2 3 23 23 H 1.08998 * 109.47117 * 60.78307 * 1 2 3 24 24 H 1.08998 * 109.41549 * 69.09221 * 4 2 1 25 25 H 1.08998 * 109.35789 * 309.26698 * 4 2 1 26 26 H 0.96990 * 119.99729 * 180.02562 * 9 8 6 27 27 H 1.09002 * 110.00581 * 190.45965 * 14 5 4 28 28 H 1.08997 * 110.00237 * 69.04928 * 14 5 4 29 29 H 1.09000 * 110.86669 * 323.62994 * 17 15 14 30 30 H 1.08994 * 110.87004 * 87.30924 * 17 15 14 31 31 H 1.09008 * 110.33408 * 141.08536 * 18 17 15 32 32 H 1.08994 * 110.33303 * 263.32017 * 18 17 15 33 33 H 1.08991 * 110.14230 * 244.37963 * 19 18 17 34 34 H 1.08998 * 110.19489 * 122.69004 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0508 -0.7408 -1.2434 5 7 3.5026 -0.9337 -1.1359 6 6 4.3172 -0.6415 -2.1973 7 1 5.3479 -0.3674 -2.0275 8 6 3.8180 -0.6976 -3.4913 9 7 2.6914 -1.3330 -3.7352 10 14 4.7453 0.1286 -4.8866 11 1 5.6287 -0.8638 -5.5499 12 1 3.7761 0.6668 -5.8747 13 1 5.5681 1.2396 -4.3446 14 6 4.0783 -1.4454 0.1239 15 6 3.5054 -0.5866 1.2484 16 1 3.8384 0.4475 1.1609 17 6 3.8104 -1.1525 2.6477 18 6 2.6485 -0.5685 3.4965 19 6 1.5322 -0.2409 2.4761 20 7 2.0243 -0.7020 1.1766 21 1 -0.3633 -1.0276 0.0141 22 1 -0.3632 0.5259 0.8829 23 1 -0.3633 0.5016 -0.8969 24 1 1.8283 -0.1538 -2.1345 25 1 1.5607 -1.7115 -1.3173 26 1 2.3429 -1.3725 -4.6395 27 1 5.1643 -1.3546 0.1016 28 1 3.7930 -2.4874 0.2680 29 1 3.7772 -2.2420 2.6416 30 1 4.7739 -0.7943 3.0099 31 1 2.2978 -1.3069 4.2176 32 1 2.9718 0.3379 4.0082 33 1 1.3517 0.8336 2.4493 34 1 0.6154 -0.7687 2.7390 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306640953.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:45 Heat of formation + Delta-G solvation = 29.336197 kcal Electronic energy + Delta-G solvation = -14825.572649 eV Core-core repulsion = 12565.843315 eV Total energy + Delta-G solvation = -2259.729334 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.20893 -35.15122 -33.25896 -31.50021 -28.86105 -28.29449 -25.89718 -24.73282 -21.45657 -21.18898 -19.92192 -18.94994 -16.64400 -15.41656 -15.05938 -14.73545 -14.09173 -13.73506 -13.26679 -12.90633 -12.54536 -12.16131 -11.85617 -11.72306 -11.25513 -11.14331 -10.99014 -10.86315 -10.50949 -10.35816 -10.34341 -10.01407 -9.97706 -9.67699 -9.48595 -8.43243 -7.69928 -6.60643 -5.73136 -3.14312 3.39648 3.46619 3.49121 4.49002 4.57016 5.01554 5.11015 5.27503 5.39516 5.53366 5.70108 5.78290 5.88356 5.98683 6.01499 6.05645 6.10487 6.20019 6.33367 6.38657 6.41055 6.52061 6.57042 6.72865 6.84733 7.00293 7.35065 7.68556 7.75614 7.80971 8.00568 8.48165 9.27246 9.90273 10.47235 11.35233 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.045455 B = 0.010018 C = 0.008738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.846443 B = 2794.244554 C = 3203.593383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.059 3.941 3 H 0.029 0.971 4 C 0.193 3.807 5 N -0.598 5.598 6 C -0.253 4.253 7 H 0.065 0.935 8 C 0.001 3.999 9 N -0.903 5.903 10 Si 0.901 3.099 11 H -0.288 1.288 12 H -0.290 1.290 13 H -0.280 1.280 14 C 0.160 3.840 15 C 0.053 3.947 16 H 0.048 0.952 17 C -0.115 4.115 18 C -0.127 4.127 19 C 0.048 3.952 20 N -0.524 5.524 21 H 0.060 0.940 22 H 0.041 0.959 23 H 0.057 0.943 24 H 0.081 0.919 25 H 0.027 0.973 26 H 0.253 0.747 27 H 0.053 0.947 28 H 0.029 0.971 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.028 0.972 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.724 2.360 10.888 11.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.051 4.051 3 H 0.047 0.953 4 C 0.067 3.933 5 N -0.321 5.321 6 C -0.383 4.383 7 H 0.083 0.917 8 C -0.198 4.198 9 N -0.548 5.548 10 Si 0.731 3.269 11 H -0.215 1.215 12 H -0.216 1.216 13 H -0.205 1.205 14 C 0.034 3.966 15 C -0.056 4.056 16 H 0.066 0.934 17 C -0.154 4.154 18 C -0.165 4.165 19 C -0.080 4.080 20 N -0.250 5.250 21 H 0.079 0.921 22 H 0.060 0.940 23 H 0.076 0.924 24 H 0.099 0.901 25 H 0.045 0.955 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.047 0.953 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.046 0.954 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.996 1.852 10.617 10.961 hybrid contribution 0.527 1.311 -0.677 1.567 sum -1.469 3.163 9.940 10.534 Atomic orbital electron populations 1.21738 0.95421 1.01911 1.00474 1.22426 0.94225 0.95776 0.92650 0.95343 1.20847 0.82953 0.97245 0.92248 1.44229 1.02855 1.74701 1.10281 1.19228 0.94687 1.39489 0.84862 0.91713 1.25032 0.98006 0.99420 0.97319 1.70052 1.22115 1.42954 1.19702 0.86301 0.78958 0.79407 0.82244 1.21472 1.21587 1.20533 1.20954 0.95733 0.94637 0.85282 1.23151 0.88452 0.98780 0.95212 0.93389 1.22371 0.97090 1.01045 0.94858 1.22593 0.96000 1.00254 0.97625 1.22488 0.97897 0.97375 0.90260 1.63029 1.05464 1.55684 1.00829 0.92120 0.94020 0.92406 0.90086 0.95534 0.93700 0.92856 0.95329 0.90798 0.91738 0.91619 0.92223 0.95363 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.06 37.16 0.34 -2.04 16 2 C 0.06 1.21 2.71 -67.96 -0.18 1.03 16 3 H 0.03 0.62 8.05 -51.93 -0.42 0.20 16 4 C 0.19 4.84 4.55 -3.43 -0.02 4.83 16 5 N -0.60 -15.68 3.06 -171.73 -0.53 -16.21 16 6 C -0.25 -7.14 9.59 -15.05 -0.14 -7.28 16 7 H 0.07 1.79 7.87 -52.49 -0.41 1.37 16 8 C 0.00 0.01 4.91 -17.43 -0.09 -0.07 16 9 N -0.90 -26.72 11.16 55.49 0.62 -26.11 16 10 Si 0.90 22.02 29.58 -169.99 -5.03 16.99 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.16 3.55 6.20 -3.59 -0.02 3.52 16 15 C 0.05 1.01 2.82 -66.36 -0.19 0.82 16 16 H 0.05 0.96 8.07 -51.93 -0.42 0.54 16 17 C -0.11 -1.71 6.60 -25.00 -0.16 -1.87 16 18 C -0.13 -1.68 6.98 -24.60 -0.17 -1.85 16 19 C 0.05 0.74 5.64 -3.17 -0.02 0.73 16 20 N -0.52 -9.97 4.46 -216.58 -0.97 -10.94 16 21 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 22 H 0.04 0.63 7.40 -51.93 -0.38 0.25 16 23 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.08 2.23 6.24 -51.93 -0.32 1.91 16 25 H 0.03 0.72 8.13 -51.93 -0.42 0.30 16 26 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.05 1.13 7.95 -51.93 -0.41 0.72 16 28 H 0.03 0.66 8.13 -51.93 -0.42 0.23 16 29 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.03 0.43 7.98 -51.93 -0.41 0.02 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 263.71 15.07 3.97 3.97 Total: -1.00 -29.89 263.71 -8.31 -38.20 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -5.72 Total: -3.72 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -0.66 Total: -2.19 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -0.87 Total: -53.25 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.89 -8.31 -38.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306640953.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.532 kcal (2) G-P(sol) polarization free energy of solvation -29.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds