Wall clock time and date at job start Mon Mar 30 2020 02:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99903 * 2 1 4 4 H 1.48496 * 109.47491 * 95.03802 * 3 2 1 5 5 H 1.48500 * 109.47167 * 215.03725 * 3 2 1 6 6 H 1.48502 * 109.47329 * 335.03665 * 3 2 1 7 7 C 1.37872 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00438 * 172.68841 * 7 2 1 9 9 C 1.50701 * 120.00120 * 352.68042 * 7 2 1 10 10 C 1.52999 * 115.54765 * 85.88721 * 9 7 2 11 11 N 1.46900 * 109.47429 * 53.94836 * 10 9 7 12 12 C 1.46914 * 111.00165 * 175.84520 * 11 10 9 13 13 C 1.53121 * 109.33111 * 175.92425 * 12 11 10 14 14 C 1.53167 * 109.11507 * 57.70979 * 13 12 11 15 15 C 1.53116 * 109.11393 * 303.32578 * 14 13 12 16 16 N 1.45359 * 110.99475 * 51.73388 * 11 10 9 17 17 C 1.53001 * 117.50312 * 300.22125 * 9 7 2 18 18 C 1.53000 * 117.50491 * 231.55767 * 9 7 2 19 19 H 0.97006 * 120.00283 * 178.26245 * 1 2 3 20 20 H 1.09000 * 109.47204 * 173.95272 * 10 9 7 21 21 H 1.09004 * 109.47033 * 293.95261 * 10 9 7 22 22 H 1.08994 * 109.49365 * 295.88058 * 12 11 10 23 23 H 1.08998 * 109.49080 * 55.96714 * 12 11 10 24 24 H 1.09004 * 109.52831 * 177.59744 * 13 12 11 25 25 H 1.08994 * 109.52967 * 297.81679 * 13 12 11 26 26 H 1.08999 * 109.52847 * 63.21460 * 14 13 12 27 27 H 1.08997 * 109.53417 * 183.43225 * 14 13 12 28 28 H 1.08991 * 109.49988 * 177.66363 * 15 14 13 29 29 H 1.09002 * 109.49271 * 297.75254 * 15 14 13 30 30 H 1.00899 * 111.00093 * 310.16654 * 16 11 10 31 31 H 1.09002 * 117.49478 * 359.97438 * 17 9 7 32 32 H 1.08993 * 117.50554 * 145.01629 * 17 9 7 33 33 H 1.08991 * 117.50180 * 214.98098 * 18 9 7 34 34 H 1.09002 * 117.49501 * 359.97438 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6031 1.9850 1.3946 5 1 3.4893 1.4733 -0.8038 6 1 1.3974 2.6811 -0.5909 7 6 2.0045 -1.1940 -0.0005 8 1 3.0779 -1.1978 -0.1196 9 6 1.2602 -2.4939 0.1652 10 6 0.6971 -3.1004 -1.1216 11 7 1.7740 -3.2355 -2.1116 12 6 1.2913 -3.9058 -3.3265 13 6 2.4128 -3.9355 -4.3686 14 6 3.6298 -4.6519 -3.7755 15 6 4.0477 -3.9443 -2.4835 16 7 2.9163 -3.9345 -1.5464 17 6 0.4515 -2.6863 1.4496 18 6 1.7563 -3.4597 1.2432 19 1 -0.4851 -0.8397 -0.0255 20 1 0.2760 -4.0825 -0.9065 21 1 -0.0822 -2.4501 -1.5191 22 1 0.9922 -4.9256 -3.0849 23 1 0.4366 -3.3609 -3.7274 24 1 2.0720 -4.4697 -5.2556 25 1 2.6863 -2.9156 -4.6388 26 1 3.3716 -5.6880 -3.5563 27 1 4.4530 -4.6236 -4.4892 28 1 4.8877 -4.4738 -2.0341 29 1 4.3420 -2.9193 -2.7091 30 1 3.1840 -3.5325 -0.6605 31 1 0.4581 -1.8727 2.1751 32 1 -0.4815 -3.2452 1.3781 33 1 1.6811 -4.5270 1.0359 34 1 2.6213 -3.1550 1.8323 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306667197.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:25 Heat of formation + Delta-G solvation = 44.850402 kcal Electronic energy + Delta-G solvation = -14725.768625 eV Core-core repulsion = 12466.712037 eV Total energy + Delta-G solvation = -2259.056588 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.28107 -36.40902 -32.41492 -31.76390 -31.35257 -26.66779 -24.88757 -23.38449 -22.61200 -21.23726 -19.23954 -19.11334 -16.76935 -15.79771 -14.84540 -14.40351 -13.82133 -13.69499 -13.59454 -13.05654 -12.87978 -12.44265 -12.28010 -12.06786 -11.25123 -10.93503 -10.72725 -10.53497 -10.48787 -10.33730 -10.16099 -10.07170 -9.40124 -9.32252 -8.43072 -8.37915 -8.22437 -6.78896 -6.26215 -3.96821 3.46673 3.50066 3.65969 4.08398 4.57586 5.08349 5.22494 5.29104 5.30557 5.42305 5.43729 5.85515 5.93089 5.95281 6.13339 6.14503 6.21248 6.29480 6.30177 6.35099 6.41634 6.60761 6.63304 6.68345 6.69502 6.91377 7.21587 7.29967 7.52504 8.08624 8.27118 8.38756 8.49446 8.95977 9.75264 11.13342 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.030139 B = 0.011428 C = 0.010041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.796514 B = 2449.438000 C = 2787.856700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.028 3.972 3 Si 1.067 2.933 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.552 4.552 8 H 0.048 0.952 9 C 0.023 3.977 10 C 0.097 3.903 11 N -0.359 5.359 12 C 0.054 3.946 13 C -0.115 4.115 14 C -0.115 4.115 15 C 0.058 3.942 16 N -0.542 5.542 17 C -0.177 4.177 18 C -0.199 4.199 19 H 0.273 0.727 20 H 0.007 0.993 21 H 0.073 0.927 22 H 0.028 0.972 23 H 0.071 0.929 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.037 0.963 30 H 0.364 0.636 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.430 -7.155 -4.989 9.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.177 4.177 3 Si 0.896 3.104 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.590 4.590 8 H 0.066 0.934 9 C 0.022 3.978 10 C -0.031 4.031 11 N -0.174 5.174 12 C -0.075 4.075 13 C -0.153 4.153 14 C -0.153 4.153 15 C -0.073 4.073 16 N -0.268 5.268 17 C -0.215 4.215 18 C -0.236 4.236 19 H 0.084 0.916 20 H 0.025 0.975 21 H 0.091 0.909 22 H 0.046 0.954 23 H 0.090 0.910 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.055 0.945 30 H 0.186 0.814 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.158 -5.636 -5.289 8.777 hybrid contribution 0.168 -1.616 0.317 1.656 sum 4.326 -7.253 -4.972 9.800 Atomic orbital electron populations 1.70717 1.06823 1.30971 1.45833 1.25639 0.96527 1.02036 0.93532 0.83570 0.74821 0.75559 0.76424 1.21734 1.21655 1.21185 1.21068 0.93774 0.89594 1.54517 0.93374 1.19106 0.98260 0.95239 0.85231 1.21827 0.91874 0.96178 0.93247 1.65226 1.04445 1.43386 1.04354 1.22135 0.96855 0.96940 0.91602 1.21560 0.95694 1.00892 0.97163 1.21564 0.97626 0.99514 0.96573 1.21905 0.92854 0.98980 0.93565 1.63613 1.03577 1.53578 1.06056 1.22741 0.92943 1.02024 1.03841 1.22952 0.97872 0.95837 1.06944 0.91628 0.97478 0.90889 0.95374 0.91042 0.92260 0.91496 0.92096 0.92235 0.91314 0.94510 0.81448 0.89767 0.91768 0.91256 0.90314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.68 13.50 55.43 0.75 -25.93 16 2 C 0.03 0.78 5.38 -17.82 -0.10 0.68 16 3 Si 1.07 25.29 29.91 -169.99 -5.08 20.20 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.55 -14.94 8.18 -34.44 -0.28 -15.22 16 8 H 0.05 1.34 7.82 -52.48 -0.41 0.93 16 9 C 0.02 0.54 0.19 -155.66 -0.03 0.51 16 10 C 0.10 2.21 5.19 -3.82 -0.02 2.19 16 11 N -0.36 -7.59 4.80 -113.70 -0.55 -8.13 16 12 C 0.05 0.96 5.69 -3.75 -0.02 0.94 16 13 C -0.12 -1.74 6.13 -26.58 -0.16 -1.90 16 14 C -0.11 -1.64 6.13 -26.59 -0.16 -1.81 16 15 C 0.06 0.96 6.79 -3.75 -0.03 0.93 16 16 N -0.54 -10.65 6.79 -10.31 -0.07 -10.72 16 17 C -0.18 -4.10 8.81 -26.69 -0.24 -4.34 16 18 C -0.20 -4.29 8.41 -26.69 -0.22 -4.52 16 19 H 0.27 7.94 6.14 -40.82 -0.25 7.69 16 20 H 0.01 0.16 8.08 -51.93 -0.42 -0.26 16 21 H 0.07 1.78 7.61 -51.93 -0.40 1.39 16 22 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.36 7.69 5.81 -174.69 -1.01 6.68 16 31 H 0.08 2.09 8.14 -51.93 -0.42 1.66 16 32 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 33 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 LS Contribution 270.37 15.07 4.07 4.07 Total: -1.00 -28.81 270.37 -8.50 -37.31 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -6.36 Total: 5.74 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: -1.26 Total: -22.54 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: 0.13 Total: -44.79 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -5.08 Total: 20.20 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.81 -8.50 -37.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306667197.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.157 kcal (2) G-P(sol) polarization free energy of solvation -28.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds