Wall clock time and date at job start Mon Mar 30 2020 02:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99903 * 2 1 4 4 H 1.48496 * 109.47491 * 95.03802 * 3 2 1 5 5 H 1.48500 * 109.47167 * 215.03725 * 3 2 1 6 6 H 1.48502 * 109.47329 * 335.03665 * 3 2 1 7 7 C 1.37872 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00438 * 172.68841 * 7 2 1 9 9 C 1.50701 * 120.00120 * 352.68042 * 7 2 1 10 10 C 1.52999 * 115.54765 * 85.88721 * 9 7 2 11 11 N 1.46900 * 109.47429 * 53.94836 * 10 9 7 12 12 C 1.46914 * 111.00165 * 175.84520 * 11 10 9 13 13 C 1.53121 * 109.33111 * 175.92425 * 12 11 10 14 14 C 1.53167 * 109.11507 * 57.70979 * 13 12 11 15 15 C 1.53116 * 109.11393 * 303.32578 * 14 13 12 16 16 N 1.45359 * 110.99475 * 51.73388 * 11 10 9 17 17 C 1.53001 * 117.50312 * 300.22125 * 9 7 2 18 18 C 1.53000 * 117.50491 * 231.55767 * 9 7 2 19 19 H 0.97006 * 120.00283 * 178.26245 * 1 2 3 20 20 H 1.09000 * 109.47204 * 173.95272 * 10 9 7 21 21 H 1.09004 * 109.47033 * 293.95261 * 10 9 7 22 22 H 1.08994 * 109.49365 * 295.88058 * 12 11 10 23 23 H 1.08998 * 109.49080 * 55.96714 * 12 11 10 24 24 H 1.09004 * 109.52831 * 177.59744 * 13 12 11 25 25 H 1.08994 * 109.52967 * 297.81679 * 13 12 11 26 26 H 1.08999 * 109.52847 * 63.21460 * 14 13 12 27 27 H 1.08997 * 109.53417 * 183.43225 * 14 13 12 28 28 H 1.08991 * 109.49988 * 177.66363 * 15 14 13 29 29 H 1.09002 * 109.49271 * 297.75254 * 15 14 13 30 30 H 1.00899 * 111.00093 * 310.16654 * 16 11 10 31 31 H 1.09002 * 117.49478 * 359.97438 * 17 9 7 32 32 H 1.08993 * 117.50554 * 145.01629 * 17 9 7 33 33 H 1.08991 * 117.50180 * 214.98098 * 18 9 7 34 34 H 1.09002 * 117.49501 * 359.97438 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6031 1.9850 1.3946 5 1 3.4893 1.4733 -0.8038 6 1 1.3974 2.6811 -0.5909 7 6 2.0045 -1.1940 -0.0005 8 1 3.0779 -1.1978 -0.1196 9 6 1.2602 -2.4939 0.1652 10 6 0.6971 -3.1004 -1.1216 11 7 1.7740 -3.2355 -2.1116 12 6 1.2913 -3.9058 -3.3265 13 6 2.4128 -3.9355 -4.3686 14 6 3.6298 -4.6519 -3.7755 15 6 4.0477 -3.9443 -2.4835 16 7 2.9163 -3.9345 -1.5464 17 6 0.4515 -2.6863 1.4496 18 6 1.7563 -3.4597 1.2432 19 1 -0.4851 -0.8397 -0.0255 20 1 0.2760 -4.0825 -0.9065 21 1 -0.0822 -2.4501 -1.5191 22 1 0.9922 -4.9256 -3.0849 23 1 0.4366 -3.3609 -3.7274 24 1 2.0720 -4.4697 -5.2556 25 1 2.6863 -2.9156 -4.6388 26 1 3.3716 -5.6880 -3.5563 27 1 4.4530 -4.6236 -4.4892 28 1 4.8877 -4.4738 -2.0341 29 1 4.3420 -2.9193 -2.7091 30 1 3.1840 -3.5325 -0.6605 31 1 0.4581 -1.8727 2.1751 32 1 -0.4815 -3.2452 1.3781 33 1 1.6811 -4.5270 1.0359 34 1 2.6213 -3.1550 1.8323 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306667197.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:25 Heat of formation + Delta-G solvation = 27.371506 kcal Electronic energy + Delta-G solvation = -14726.526567 eV Core-core repulsion = 12466.712037 eV Total energy + Delta-G solvation = -2259.814530 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.87871 -38.07540 -34.03636 -33.70526 -32.74908 -28.26824 -26.93588 -24.84885 -24.08803 -23.03875 -21.15349 -20.46210 -18.63334 -17.42442 -16.45150 -15.82804 -15.61217 -15.39387 -15.28383 -14.52497 -14.39913 -14.05555 -13.86394 -13.74818 -12.96981 -12.75627 -12.58901 -12.19752 -11.96015 -11.87791 -11.72591 -11.43105 -11.19109 -10.86632 -10.40545 -10.35381 -10.18682 -8.46414 -8.34963 -6.15138 1.54363 1.62006 1.78842 2.54681 2.62351 3.27652 3.32858 3.82780 4.00182 4.07939 4.10643 4.25283 4.43013 4.51822 4.56125 4.59919 4.68489 4.81379 4.85362 4.87522 4.98363 5.05780 5.06838 5.08199 5.31052 5.35010 5.45117 5.48818 5.86236 6.21701 6.34709 6.57687 6.70364 6.81786 7.62550 8.95107 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.030139 B = 0.011428 C = 0.010041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.796514 B = 2449.438000 C = 2787.856700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.020 4.020 3 Si 1.108 2.892 4 H -0.277 1.277 5 H -0.279 1.279 6 H -0.289 1.289 7 C -0.551 4.551 8 H 0.036 0.964 9 C 0.001 3.999 10 C 0.110 3.890 11 N -0.382 5.382 12 C 0.050 3.950 13 C -0.112 4.112 14 C -0.109 4.109 15 C 0.051 3.949 16 N -0.542 5.542 17 C -0.182 4.182 18 C -0.169 4.169 19 H 0.263 0.737 20 H 0.014 0.986 21 H 0.046 0.954 22 H 0.032 0.968 23 H 0.068 0.932 24 H 0.089 0.911 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.018 0.982 30 H 0.352 0.648 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.695 -8.269 -5.724 11.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.219 4.219 3 Si 0.933 3.067 4 H -0.203 1.203 5 H -0.205 1.205 6 H -0.215 1.215 7 C -0.589 4.589 8 H 0.055 0.945 9 C 0.000 4.000 10 C -0.019 4.019 11 N -0.197 5.197 12 C -0.079 4.079 13 C -0.150 4.150 14 C -0.146 4.146 15 C -0.079 4.079 16 N -0.267 5.267 17 C -0.220 4.220 18 C -0.206 4.206 19 H 0.074 0.926 20 H 0.032 0.968 21 H 0.064 0.936 22 H 0.050 0.950 23 H 0.086 0.914 24 H 0.108 0.892 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.106 0.894 28 H 0.110 0.890 29 H 0.036 0.964 30 H 0.171 0.829 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.434 -6.775 -6.035 10.576 hybrid contribution -0.188 -1.328 0.530 1.442 sum 5.245 -8.104 -5.506 11.113 Atomic orbital electron populations 1.70816 1.07631 1.30475 1.48278 1.26803 0.96655 1.05253 0.93224 0.83020 0.74115 0.72425 0.77186 1.20336 1.20473 1.21542 1.21266 0.93333 0.91038 1.53251 0.94545 1.19122 0.99303 0.95280 0.86314 1.21531 0.91869 0.95612 0.92879 1.65148 1.04546 1.45237 1.04731 1.22254 0.98002 0.96671 0.90935 1.21574 0.95140 1.00874 0.97364 1.21562 0.98131 0.99182 0.95765 1.22120 0.92602 0.98661 0.94477 1.63682 1.04046 1.52668 1.06256 1.22675 0.94429 1.02042 1.02851 1.22893 0.96817 0.96307 1.04628 0.92631 0.96834 0.93580 0.94979 0.91372 0.89223 0.92707 0.91413 0.89408 0.88987 0.96374 0.82858 0.91965 0.90414 0.89314 0.90097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.90 13.50 21.44 0.29 -55.61 16 2 C -0.02 -1.12 5.38 84.65 0.46 -0.67 16 3 Si 1.11 51.09 29.91 68.60 2.05 53.14 16 4 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 7 C -0.55 -30.01 8.18 25.60 0.21 -29.80 16 8 H 0.04 2.03 7.82 -2.91 -0.02 2.00 16 9 C 0.00 0.03 0.19 -52.93 -0.01 0.02 16 10 C 0.11 5.01 5.19 86.30 0.45 5.46 16 11 N -0.38 -15.89 4.80 -513.64 -2.47 -18.36 16 12 C 0.05 1.72 5.69 86.34 0.49 2.21 16 13 C -0.11 -3.09 6.13 30.69 0.19 -2.90 16 14 C -0.11 -2.75 6.13 30.69 0.19 -2.57 16 15 C 0.05 1.60 6.79 86.34 0.59 2.18 16 16 N -0.54 -20.52 6.79 -186.52 -1.27 -21.79 16 17 C -0.18 -8.39 8.81 30.62 0.27 -8.12 16 18 C -0.17 -7.10 8.41 30.62 0.26 -6.84 16 19 H 0.26 15.76 6.14 -92.70 -0.57 15.19 16 20 H 0.01 0.59 8.08 -2.39 -0.02 0.57 16 21 H 0.05 2.31 7.61 -2.38 -0.02 2.29 16 22 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 24 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 25 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.02 0.62 8.14 -2.39 -0.02 0.61 16 30 H 0.35 14.50 5.81 -204.88 -1.19 13.31 16 31 H 0.06 3.12 8.14 -2.39 -0.02 3.10 16 32 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 33 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 34 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 Total: -1.00 -61.27 270.37 1.76 -59.51 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: 0.07 Total: 24.13 kcal Atomic # 6 Polarization: -44.11 SS G_CDS: 3.08 Total: -41.03 kcal Atomic # 7 Polarization: -92.32 SS G_CDS: -3.44 Total: -95.76 kcal Atomic # 14 Polarization: 51.09 SS G_CDS: 2.05 Total: 53.14 kcal Total: -61.27 1.76 -59.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306667197.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.886 kcal (2) G-P(sol) polarization free energy of solvation -61.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds