Wall clock time and date at job start Mon Mar 30 2020 02:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46874 * 180.02562 * 9 7 2 11 11 C 1.46355 * 110.99819 * 66.04922 * 10 9 7 12 12 C 1.53872 * 111.69432 * 178.29894 * 11 10 9 13 13 C 1.51399 * 107.05422 * 56.04125 * 12 11 10 14 14 H 1.08993 * 109.23583 * 55.71761 * 13 12 11 15 15 N 1.45670 * 118.27476 * 181.42522 * 13 12 11 16 16 C 1.47909 * 107.31011 * 150.07358 * 15 13 12 17 17 C 1.55416 * 106.81908 * 353.77302 * 16 15 13 18 18 C 1.53516 * 101.75576 * 337.94832 * 17 16 15 19 19 H 1.08997 * 111.03748 * 282.11995 * 18 17 16 20 20 C 1.47641 * 111.00101 * 298.61584 * 10 9 7 21 21 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 23 23 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 24 24 H 1.08998 * 109.03275 * 298.86826 * 11 10 9 25 25 H 1.08993 * 109.03622 * 57.80147 * 11 10 9 26 26 H 1.08997 * 109.93409 * 175.42926 * 12 11 10 27 27 H 1.09003 * 109.93166 * 296.64940 * 12 11 10 28 28 H 1.00899 * 110.99925 * 270.83779 * 15 13 12 29 29 H 1.09005 * 109.55881 * 234.70687 * 16 15 13 30 30 H 1.09001 * 110.54404 * 113.38693 * 16 15 13 31 31 H 1.09004 * 110.97119 * 219.82903 * 17 16 15 32 32 H 1.09004 * 110.96942 * 96.06474 * 17 16 15 33 33 H 1.09005 * 109.92756 * 304.76190 * 20 10 9 34 34 H 1.08991 * 109.93300 * 65.97242 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 2.9682 -3.6538 1.2482 12 6 3.9441 -4.8430 1.2827 13 6 4.8276 -4.7280 0.0586 14 1 5.3106 -3.7509 0.0549 15 7 5.8307 -5.7597 -0.1677 16 6 6.0239 -5.8724 -1.6298 17 6 4.9598 -4.9563 -2.2960 18 6 3.9045 -4.8448 -1.1867 19 1 3.2900 -5.7437 -1.1394 20 6 3.0514 -3.5888 -1.2105 21 1 -0.4849 -0.8401 0.0004 22 1 0.6248 -2.5571 0.8897 23 1 0.6241 -2.5567 -0.8903 24 1 3.5333 -2.7271 1.3481 25 1 2.2754 -3.7394 2.0852 26 1 4.5526 -4.7982 2.1859 27 1 3.3887 -5.7804 1.2536 28 1 6.7007 -5.5238 0.2856 29 1 5.8711 -6.9063 -1.9395 30 1 7.0250 -5.5445 -1.9098 31 1 4.5421 -5.4269 -3.1860 32 1 5.3803 -3.9792 -2.5341 33 1 2.4242 -3.5826 -2.1020 34 1 3.6899 -2.7056 -1.1981 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306737652.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:37 Heat of formation + Delta-G solvation = -3.160279 kcal Electronic energy + Delta-G solvation = -14548.605873 eV Core-core repulsion = 12287.467386 eV Total energy + Delta-G solvation = -2261.138487 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.69945 -36.27927 -33.04435 -31.62566 -30.40053 -27.91345 -25.88039 -23.45995 -22.42440 -20.93433 -20.52226 -19.36780 -16.81432 -16.15294 -15.15172 -14.44738 -14.24845 -14.14710 -13.74039 -13.47676 -12.59804 -12.54949 -12.10184 -11.95562 -11.44718 -11.33728 -11.05961 -10.87749 -10.62437 -10.44180 -10.37907 -10.18959 -9.96556 -9.60892 -9.15003 -8.39571 -8.36226 -7.08139 -6.39714 -4.13947 3.38215 3.41057 3.56733 4.20190 4.48696 4.75650 4.82872 4.97578 5.14023 5.33379 5.43739 5.59261 5.61461 5.76961 5.89571 5.95006 5.98932 6.10819 6.18245 6.32540 6.38560 6.45388 6.55281 6.73838 6.83808 7.00631 7.08327 7.22038 7.45433 7.87363 8.10698 8.22578 8.49304 8.78312 9.59424 10.97008 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.043246 B = 0.008447 C = 0.008114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.301836 B = 3314.090419 C = 3449.835424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.021 3.979 3 Si 1.067 2.933 4 H -0.288 1.288 5 H -0.283 1.283 6 H -0.291 1.291 7 C -0.628 4.628 8 H 0.049 0.951 9 C 0.179 3.821 10 N -0.548 5.548 11 C 0.071 3.929 12 C -0.097 4.097 13 C 0.070 3.930 14 H 0.037 0.963 15 N -0.674 5.674 16 C 0.048 3.952 17 C -0.136 4.136 18 C -0.093 4.093 19 H 0.087 0.913 20 C 0.083 3.917 21 H 0.270 0.730 22 H 0.020 0.980 23 H 0.021 0.979 24 H 0.035 0.965 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.332 0.668 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.363 -8.881 -1.687 13.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.184 4.184 3 Si 0.896 3.104 4 H -0.214 1.214 5 H -0.209 1.209 6 H -0.217 1.217 7 C -0.667 4.667 8 H 0.067 0.933 9 C 0.053 3.947 10 N -0.272 5.272 11 C -0.058 4.058 12 C -0.136 4.136 13 C -0.040 4.040 14 H 0.055 0.945 15 N -0.303 5.303 16 C -0.081 4.081 17 C -0.175 4.175 18 C -0.112 4.112 19 H 0.105 0.895 20 C -0.045 4.045 21 H 0.081 0.919 22 H 0.038 0.962 23 H 0.039 0.961 24 H 0.054 0.946 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.147 0.853 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 9.462 -8.220 -1.624 12.639 hybrid contribution 1.236 0.018 -0.146 1.245 sum 10.699 -8.203 -1.770 13.597 Atomic orbital electron populations 1.70757 1.06849 1.30718 1.46167 1.25756 0.96483 1.02590 0.93565 0.83567 0.74684 0.75391 0.76773 1.21444 1.20861 1.21688 1.22565 0.94508 0.93159 1.56462 0.93251 1.19781 0.91377 0.86964 0.96586 1.61614 1.18615 1.46379 1.00557 1.21794 0.95270 0.95788 0.92997 1.21366 0.96463 0.99762 0.95989 1.21914 0.92409 0.92392 0.97318 0.94509 1.61485 1.11590 1.48218 1.08958 1.22858 0.97521 1.00001 0.87763 1.22608 0.96585 0.99738 0.98552 1.22150 0.95580 1.00137 0.93370 0.89462 1.21622 0.94838 0.94293 0.93782 0.91941 0.96177 0.96080 0.94633 0.91677 0.92277 0.91141 0.85280 0.90930 0.93487 0.90860 0.91488 0.91624 0.94215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.57 13.65 55.43 0.76 -26.81 16 2 C 0.02 0.61 5.46 -17.82 -0.10 0.51 16 3 Si 1.07 25.33 29.90 -169.99 -5.08 20.24 16 4 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.63 -17.53 7.70 -34.44 -0.27 -17.79 16 8 H 0.05 1.39 6.07 -52.48 -0.32 1.07 16 9 C 0.18 4.64 4.40 -4.97 -0.02 4.62 16 10 N -0.55 -12.04 4.70 -236.06 -1.11 -13.15 16 11 C 0.07 1.42 5.20 -3.67 -0.02 1.40 16 12 C -0.10 -1.60 6.10 -27.09 -0.17 -1.77 16 13 C 0.07 1.10 2.67 -67.88 -0.18 0.92 16 14 H 0.04 0.63 7.93 -51.93 -0.41 0.22 16 15 N -0.67 -9.15 7.33 -104.90 -0.77 -9.92 16 16 C 0.05 0.58 7.60 -1.99 -0.02 0.56 16 17 C -0.14 -1.83 6.56 -25.18 -0.17 -2.00 16 18 C -0.09 -1.53 2.76 -89.64 -0.25 -1.77 16 19 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 20 C 0.08 1.66 4.80 -4.00 -0.02 1.65 16 21 H 0.27 8.16 7.22 -40.82 -0.29 7.86 16 22 H 0.02 0.55 7.96 -51.93 -0.41 0.14 16 23 H 0.02 0.58 8.01 -51.93 -0.42 0.16 16 24 H 0.04 0.78 6.84 -51.93 -0.36 0.43 16 25 H 0.06 1.30 8.10 -51.93 -0.42 0.88 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.33 3.92 8.88 -39.29 -0.35 3.57 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.04 0.87 6.66 -51.93 -0.35 0.53 16 LS Contribution 262.94 15.07 3.96 3.96 Total: -1.00 -29.63 262.94 -8.94 -38.57 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -5.50 Total: 0.79 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -1.20 Total: -13.68 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: -1.12 Total: -49.88 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.08 Total: 20.24 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.63 -8.94 -38.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306737652.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.408 kcal (2) G-P(sol) polarization free energy of solvation -29.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds