Wall clock time and date at job start Mon Mar 30 2020 02:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46874 * 180.02562 * 9 7 2 11 11 C 1.46355 * 110.99819 * 66.04922 * 10 9 7 12 12 C 1.53872 * 111.69432 * 178.29894 * 11 10 9 13 13 C 1.51399 * 107.05422 * 56.04125 * 12 11 10 14 14 H 1.08993 * 109.23583 * 55.71761 * 13 12 11 15 15 N 1.45670 * 118.27476 * 181.42522 * 13 12 11 16 16 C 1.47909 * 107.31011 * 150.07358 * 15 13 12 17 17 C 1.55416 * 106.81908 * 353.77302 * 16 15 13 18 18 C 1.53516 * 101.75576 * 337.94832 * 17 16 15 19 19 H 1.08997 * 111.03748 * 282.11995 * 18 17 16 20 20 C 1.47641 * 111.00101 * 298.61584 * 10 9 7 21 21 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 23 23 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 24 24 H 1.08998 * 109.03275 * 298.86826 * 11 10 9 25 25 H 1.08993 * 109.03622 * 57.80147 * 11 10 9 26 26 H 1.08997 * 109.93409 * 175.42926 * 12 11 10 27 27 H 1.09003 * 109.93166 * 296.64940 * 12 11 10 28 28 H 1.00899 * 110.99925 * 270.83779 * 15 13 12 29 29 H 1.09005 * 109.55881 * 234.70687 * 16 15 13 30 30 H 1.09001 * 110.54404 * 113.38693 * 16 15 13 31 31 H 1.09004 * 110.97119 * 219.82903 * 17 16 15 32 32 H 1.09004 * 110.96942 * 96.06474 * 17 16 15 33 33 H 1.09005 * 109.92756 * 304.76190 * 20 10 9 34 34 H 1.08991 * 109.93300 * 65.97242 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 2.9682 -3.6538 1.2482 12 6 3.9441 -4.8430 1.2827 13 6 4.8276 -4.7280 0.0586 14 1 5.3106 -3.7509 0.0549 15 7 5.8307 -5.7597 -0.1677 16 6 6.0239 -5.8724 -1.6298 17 6 4.9598 -4.9563 -2.2960 18 6 3.9045 -4.8448 -1.1867 19 1 3.2900 -5.7437 -1.1394 20 6 3.0514 -3.5888 -1.2105 21 1 -0.4849 -0.8401 0.0004 22 1 0.6248 -2.5571 0.8897 23 1 0.6241 -2.5567 -0.8903 24 1 3.5333 -2.7271 1.3481 25 1 2.2754 -3.7394 2.0852 26 1 4.5526 -4.7982 2.1859 27 1 3.3887 -5.7804 1.2536 28 1 6.7007 -5.5238 0.2856 29 1 5.8711 -6.9063 -1.9395 30 1 7.0250 -5.5445 -1.9098 31 1 4.5421 -5.4269 -3.1860 32 1 5.3803 -3.9792 -2.5341 33 1 2.4242 -3.5826 -2.1020 34 1 3.6899 -2.7056 -1.1981 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306737652.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:37 Heat of formation + Delta-G solvation = -25.004631 kcal Electronic energy + Delta-G solvation = -14549.553115 eV Core-core repulsion = 12287.467386 eV Total energy + Delta-G solvation = -2262.085729 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.06428 -37.89021 -35.07222 -33.05297 -31.93439 -29.20650 -27.86759 -25.36301 -23.91578 -22.54275 -21.75234 -20.85607 -18.92209 -17.40519 -16.39246 -16.17928 -15.91560 -15.76407 -15.58287 -14.86867 -14.17920 -13.99176 -13.72123 -13.38511 -13.22380 -12.99683 -12.64465 -12.50743 -12.13398 -12.03008 -12.00521 -11.72688 -11.56115 -11.26154 -11.00985 -10.61592 -9.44179 -9.04009 -8.65447 -6.46266 1.45779 1.54066 1.71691 2.49389 2.97221 3.09217 3.22196 3.58792 3.77083 3.98622 4.15286 4.19731 4.38796 4.43749 4.59411 4.65776 4.71406 4.78432 4.81095 4.85611 4.95526 4.98952 5.05359 5.08219 5.14701 5.27506 5.38649 5.78759 5.87608 5.90740 6.37065 6.44102 6.46044 6.46656 7.36172 8.65631 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.043246 B = 0.008447 C = 0.008114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.301836 B = 3314.090419 C = 3449.835424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.030 4.030 3 Si 1.115 2.885 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.274 1.274 7 C -0.630 4.630 8 H 0.045 0.955 9 C 0.188 3.812 10 N -0.549 5.549 11 C 0.072 3.928 12 C -0.086 4.086 13 C 0.076 3.924 14 H 0.022 0.978 15 N -0.674 5.674 16 C 0.051 3.949 17 C -0.132 4.132 18 C -0.090 4.090 19 H 0.084 0.916 20 C 0.087 3.913 21 H 0.257 0.743 22 H 0.000 1.000 23 H 0.001 0.999 24 H 0.013 0.987 25 H 0.060 0.940 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.345 0.655 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.600 -9.624 -1.899 15.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.229 4.229 3 Si 0.937 3.063 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.200 1.200 7 C -0.669 4.669 8 H 0.064 0.936 9 C 0.061 3.939 10 N -0.272 5.272 11 C -0.057 4.057 12 C -0.124 4.124 13 C -0.034 4.034 14 H 0.040 0.960 15 N -0.303 5.303 16 C -0.078 4.078 17 C -0.171 4.171 18 C -0.110 4.110 19 H 0.102 0.898 20 C -0.041 4.041 21 H 0.067 0.933 22 H 0.018 0.982 23 H 0.019 0.981 24 H 0.031 0.969 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.092 0.908 28 H 0.162 0.838 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 11.721 -9.000 -1.833 14.891 hybrid contribution 0.523 0.189 -0.085 0.562 sum 12.243 -8.811 -1.918 15.205 Atomic orbital electron populations 1.70886 1.07819 1.29999 1.48204 1.27263 0.96550 1.06505 0.92599 0.82953 0.74094 0.71500 0.77782 1.19817 1.20494 1.19951 1.22776 0.94379 0.94076 1.55674 0.93650 1.19513 0.91838 0.88024 0.94551 1.61588 1.19215 1.44142 1.02280 1.21835 0.95437 0.96675 0.91768 1.21243 0.95891 0.97728 0.97555 1.21743 0.92738 0.92514 0.96405 0.95969 1.61436 1.11828 1.46837 1.10242 1.22927 0.98101 1.00345 0.86410 1.22622 0.95927 1.00310 0.98231 1.22048 0.95734 0.97557 0.95627 0.89803 1.21600 0.94451 0.95615 0.92438 0.93318 0.98166 0.98133 0.96907 0.92197 0.90048 0.90803 0.83815 0.89678 0.91183 0.89286 0.91804 0.92557 0.96398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.73 13.65 21.45 0.29 -57.43 16 2 C -0.03 -1.75 5.46 84.65 0.46 -1.29 16 3 Si 1.12 50.72 29.90 68.60 2.05 52.77 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.63 -35.96 7.70 25.60 0.20 -35.77 16 8 H 0.05 2.59 6.07 -2.91 -0.02 2.57 16 9 C 0.19 10.12 4.40 85.56 0.38 10.50 16 10 N -0.55 -24.63 4.70 -900.74 -4.24 -28.86 16 11 C 0.07 2.89 5.20 86.70 0.45 3.35 16 12 C -0.09 -2.69 6.10 30.36 0.19 -2.50 16 13 C 0.08 2.28 2.67 45.47 0.12 2.40 16 14 H 0.02 0.73 7.93 -2.39 -0.02 0.71 16 15 N -0.67 -16.06 7.33 -485.79 -3.56 -19.62 16 16 C 0.05 1.04 7.60 86.94 0.66 1.70 16 17 C -0.13 -3.23 6.56 31.60 0.21 -3.02 16 18 C -0.09 -2.84 2.76 -10.16 -0.03 -2.87 16 19 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 20 C 0.09 3.53 4.80 85.78 0.41 3.94 16 21 H 0.26 16.15 7.22 -92.71 -0.67 15.48 16 22 H 0.00 0.02 7.96 -2.39 -0.02 0.00 16 23 H 0.00 0.04 8.01 -2.39 -0.02 0.02 16 24 H 0.01 0.57 6.84 -2.39 -0.02 0.55 16 25 H 0.06 2.43 8.10 -2.39 -0.02 2.41 16 26 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.35 6.89 8.88 -89.69 -0.80 6.10 16 29 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 32 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 34 H 0.02 0.80 6.66 -2.39 -0.02 0.78 16 Total: -1.00 -64.15 262.94 -2.04 -66.18 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 0.37 Total: 10.52 kcal Atomic # 6 Polarization: -26.61 SS G_CDS: 3.04 Total: -23.57 kcal Atomic # 7 Polarization: -98.41 SS G_CDS: -7.50 Total: -105.92 kcal Atomic # 14 Polarization: 50.72 SS G_CDS: 2.05 Total: 52.77 kcal Total: -64.15 -2.04 -66.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306737652.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.180 kcal (2) G-P(sol) polarization free energy of solvation -64.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds