Wall clock time and date at job start Mon Mar 30 2020 03:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.48259 * 110.99822 * 2 1 4 4 C 1.52391 * 85.65930 * 223.43718 * 3 2 1 5 5 C 1.48265 * 110.99853 * 260.29387 * 2 1 3 6 6 C 1.53647 * 116.36554 * 141.47099 * 4 3 2 7 7 C 1.54595 * 102.81374 * 95.31199 * 6 4 3 8 8 N 1.47557 * 107.32808 * 20.84498 * 7 6 4 9 9 C 1.46906 * 110.99755 * 123.21876 * 8 7 6 10 10 C 1.50699 * 109.47140 * 69.87674 * 9 8 7 11 11 H 1.08003 * 119.99962 * 359.97438 * 10 9 8 12 12 C 1.37873 * 119.99861 * 180.02562 * 10 9 8 13 13 N 1.31522 * 120.00244 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99980 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47229 * 89.99965 * 14 12 10 16 16 H 1.48500 * 109.46876 * 209.99805 * 14 12 10 17 17 H 1.48499 * 109.47161 * 329.99530 * 14 12 10 18 18 C 1.48139 * 108.68546 * 0.87288 * 8 7 6 19 19 H 1.09000 * 109.46952 * 60.00677 * 1 2 3 20 20 H 1.09002 * 109.46949 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47328 * 299.99664 * 1 2 3 22 22 H 1.08997 * 113.84487 * 109.25140 * 3 2 1 23 23 H 1.08998 * 113.84230 * 337.61604 * 3 2 1 24 24 H 1.09000 * 113.84469 * 22.37635 * 5 2 1 25 25 H 1.08997 * 113.84117 * 250.74887 * 5 2 1 26 26 H 1.09005 * 110.74693 * 336.98143 * 6 4 3 27 27 H 1.08997 * 110.89774 * 213.71257 * 6 4 3 28 28 H 1.08999 * 109.87377 * 261.41551 * 7 6 4 29 29 H 1.09000 * 109.87522 * 140.28233 * 7 6 4 30 30 H 1.09004 * 109.47040 * 189.87611 * 9 8 7 31 31 H 1.09000 * 109.47033 * 309.87564 * 9 8 7 32 32 H 0.96992 * 120.00038 * 179.97438 * 13 12 10 33 33 H 1.09002 * 110.40952 * 96.33639 * 18 8 7 34 34 H 1.09006 * 110.40455 * 218.76268 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0003 1.3841 0.0000 4 6 2.9891 0.8811 -1.0448 5 6 2.0003 -0.2334 -1.3644 6 6 3.3214 1.8484 -2.1913 7 6 4.6175 2.5320 -1.6984 8 7 5.2177 1.6517 -0.6775 9 6 6.5926 1.2843 -1.0418 10 6 7.4840 2.4936 -0.9227 11 1 7.0705 3.4404 -0.6082 12 6 8.8273 2.3914 -1.2162 13 7 9.3308 1.2384 -1.5996 14 14 9.9324 3.8901 -1.0678 15 1 10.4918 3.9586 0.3061 16 1 11.0419 3.7861 -2.0494 17 1 9.1421 5.1170 -1.3423 18 6 4.3677 0.4474 -0.5302 19 1 -0.3633 0.5137 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 2.4651 1.6777 0.9412 23 1 1.2976 2.1258 -0.3797 24 1 1.2976 0.0157 -2.1595 25 1 2.4651 -1.2106 -1.4950 26 1 2.5245 2.5806 -2.3221 27 1 3.5005 1.3049 -3.1190 28 1 4.3812 3.5012 -1.2592 29 1 5.3092 2.6591 -2.5311 30 1 6.9495 0.5024 -0.3715 31 1 6.6111 0.9190 -2.0686 32 1 10.2757 1.1667 -1.8064 33 1 4.7592 -0.3704 -1.1352 34 1 4.3066 0.1511 0.5170 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307024942.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:13 Heat of formation + Delta-G solvation = 40.587553 kcal Electronic energy + Delta-G solvation = -14195.520645 eV Core-core repulsion = 11936.279206 eV Total energy + Delta-G solvation = -2259.241439 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.50096 -36.76850 -32.91647 -31.03256 -29.08245 -27.18952 -26.19621 -25.18866 -22.72041 -21.59667 -19.88362 -18.37395 -16.16517 -15.61250 -15.49456 -15.21837 -14.51506 -14.15404 -13.73763 -13.03678 -12.86986 -12.38963 -12.26521 -12.06573 -11.66316 -11.35993 -11.14139 -10.93805 -10.68116 -10.54123 -10.36810 -10.20841 -10.02705 -9.72110 -9.13959 -8.72136 -8.39739 -7.17112 -5.98953 -4.00144 3.34782 3.40382 3.44287 3.95869 4.44653 4.56065 4.71350 5.06291 5.16353 5.31620 5.35386 5.35720 5.39335 5.48519 5.67862 5.71966 5.75760 5.93544 6.02799 6.09958 6.30259 6.35969 6.36581 6.53602 6.68551 6.74348 7.08266 7.25294 7.37705 7.86323 8.11360 8.26256 8.58473 9.08383 9.64192 11.11954 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.074893 B = 0.006542 C = 0.006399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.776665 B = 4278.932621 C = 4374.340125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.484 5.484 3 C 0.022 3.978 4 C -0.094 4.094 5 C 0.013 3.987 6 C -0.132 4.132 7 C 0.056 3.944 8 N -0.528 5.528 9 C 0.188 3.812 10 C -0.505 4.505 11 H 0.062 0.938 12 C 0.054 3.946 13 N -0.900 5.900 14 Si 0.898 3.102 15 H -0.280 1.280 16 H -0.288 1.288 17 H -0.274 1.274 18 C 0.073 3.927 19 H 0.030 0.970 20 H 0.066 0.934 21 H 0.065 0.935 22 H 0.095 0.905 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.028 0.972 31 H -0.008 1.008 32 H 0.261 0.739 33 H 0.041 0.959 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.027 -0.870 -0.423 15.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 N -0.206 5.206 3 C -0.106 4.106 4 C -0.095 4.095 5 C -0.116 4.116 6 C -0.171 4.171 7 C -0.072 4.072 8 N -0.253 5.253 9 C 0.063 3.937 10 C -0.543 4.543 11 H 0.081 0.919 12 C -0.147 4.147 13 N -0.540 5.540 14 Si 0.726 3.274 15 H -0.206 1.206 16 H -0.214 1.214 17 H -0.199 1.199 18 C -0.055 4.055 19 H 0.049 0.951 20 H 0.085 0.915 21 H 0.084 0.916 22 H 0.113 0.887 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.107 0.893 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.047 0.953 31 H 0.010 0.990 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.663 -1.143 0.541 14.717 hybrid contribution 0.291 0.804 -1.407 1.646 sum -14.372 -0.338 -0.866 14.402 Atomic orbital electron populations 1.22845 0.90358 1.01978 1.00710 1.68550 1.08262 1.19224 1.24542 1.23719 0.95988 0.90440 1.00445 1.22359 0.95650 0.95536 0.95968 1.23809 0.96818 1.00135 0.90829 1.22663 0.99053 0.98037 0.97360 1.22675 0.93223 0.96865 0.94438 1.63752 1.03870 1.13284 1.44358 1.19905 0.82758 0.96833 0.94240 1.21172 0.92649 0.96136 1.44374 0.91945 1.24997 0.98129 0.96107 0.95462 1.69963 1.13414 1.24071 1.46565 0.86499 0.80114 0.82994 0.77802 1.20630 1.21373 1.19886 1.22519 0.89063 0.93370 1.00572 0.95101 0.91486 0.91573 0.88650 0.91607 0.91399 0.89329 0.91729 0.91603 0.91995 0.92216 0.95345 0.99050 0.92978 0.94052 0.90606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.10 9.64 60.07 0.58 0.48 16 2 N -0.48 -6.47 6.55 -255.12 -1.67 -8.14 16 3 C 0.02 0.31 7.30 -3.38 -0.02 0.28 16 4 C -0.09 -1.42 0.98 -154.78 -0.15 -1.58 16 5 C 0.01 0.17 7.35 -3.39 -0.02 0.15 16 6 C -0.13 -2.03 6.35 -25.56 -0.16 -2.19 16 7 C 0.06 1.10 6.41 -2.63 -0.02 1.08 16 8 N -0.53 -11.72 5.15 -233.13 -1.20 -12.92 16 9 C 0.19 5.02 4.30 -4.97 -0.02 5.00 16 10 C -0.50 -14.46 8.66 -34.44 -0.30 -14.76 16 11 H 0.06 1.78 7.78 -52.48 -0.41 1.37 16 12 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 13 N -0.90 -27.13 13.29 55.43 0.74 -26.40 16 14 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 18 C 0.07 1.37 6.09 -2.93 -0.02 1.35 16 19 H 0.03 0.30 7.64 -51.93 -0.40 -0.10 16 20 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 22 H 0.10 1.41 8.12 -51.93 -0.42 0.99 16 23 H 0.07 0.80 7.83 -51.93 -0.41 0.40 16 24 H 0.07 0.78 7.63 -51.93 -0.40 0.38 16 25 H 0.09 1.15 8.12 -51.93 -0.42 0.73 16 26 H 0.06 0.86 7.99 -51.93 -0.41 0.44 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.06 1.28 7.31 -51.93 -0.38 0.90 16 30 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 31 H -0.01 -0.23 7.96 -51.93 -0.41 -0.65 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.04 0.80 7.80 -51.93 -0.40 0.40 16 34 H 0.08 1.44 8.07 -51.93 -0.42 1.02 16 LS Contribution 273.59 15.07 4.12 4.12 Total: -1.00 -30.11 273.59 -9.00 -39.11 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -5.73 Total: -3.94 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -0.24 Total: -8.73 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: -2.14 Total: -47.46 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.11 -9.00 -39.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307024942.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.699 kcal (2) G-P(sol) polarization free energy of solvation -30.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds