Wall clock time and date at job start Mon Mar 30 2020 03:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.48259 * 110.99822 * 2 1 4 4 C 1.52391 * 85.65930 * 223.43718 * 3 2 1 5 5 C 1.48265 * 110.99853 * 260.29387 * 2 1 3 6 6 C 1.53647 * 116.36554 * 141.47099 * 4 3 2 7 7 C 1.54595 * 102.81374 * 95.31199 * 6 4 3 8 8 N 1.47557 * 107.32808 * 20.84498 * 7 6 4 9 9 C 1.46906 * 110.99755 * 123.21876 * 8 7 6 10 10 C 1.50699 * 109.47140 * 69.87674 * 9 8 7 11 11 H 1.08003 * 119.99962 * 359.97438 * 10 9 8 12 12 C 1.37873 * 119.99861 * 180.02562 * 10 9 8 13 13 N 1.31522 * 120.00244 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99980 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47229 * 89.99965 * 14 12 10 16 16 H 1.48500 * 109.46876 * 209.99805 * 14 12 10 17 17 H 1.48499 * 109.47161 * 329.99530 * 14 12 10 18 18 C 1.48139 * 108.68546 * 0.87288 * 8 7 6 19 19 H 1.09000 * 109.46952 * 60.00677 * 1 2 3 20 20 H 1.09002 * 109.46949 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47328 * 299.99664 * 1 2 3 22 22 H 1.08997 * 113.84487 * 109.25140 * 3 2 1 23 23 H 1.08998 * 113.84230 * 337.61604 * 3 2 1 24 24 H 1.09000 * 113.84469 * 22.37635 * 5 2 1 25 25 H 1.08997 * 113.84117 * 250.74887 * 5 2 1 26 26 H 1.09005 * 110.74693 * 336.98143 * 6 4 3 27 27 H 1.08997 * 110.89774 * 213.71257 * 6 4 3 28 28 H 1.08999 * 109.87377 * 261.41551 * 7 6 4 29 29 H 1.09000 * 109.87522 * 140.28233 * 7 6 4 30 30 H 1.09004 * 109.47040 * 189.87611 * 9 8 7 31 31 H 1.09000 * 109.47033 * 309.87564 * 9 8 7 32 32 H 0.96992 * 120.00038 * 179.97438 * 13 12 10 33 33 H 1.09002 * 110.40952 * 96.33639 * 18 8 7 34 34 H 1.09006 * 110.40455 * 218.76268 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0003 1.3841 0.0000 4 6 2.9891 0.8811 -1.0448 5 6 2.0003 -0.2334 -1.3644 6 6 3.3214 1.8484 -2.1913 7 6 4.6175 2.5320 -1.6984 8 7 5.2177 1.6517 -0.6775 9 6 6.5926 1.2843 -1.0418 10 6 7.4840 2.4936 -0.9227 11 1 7.0705 3.4404 -0.6082 12 6 8.8273 2.3914 -1.2162 13 7 9.3308 1.2384 -1.5996 14 14 9.9324 3.8901 -1.0678 15 1 10.4918 3.9586 0.3061 16 1 11.0419 3.7861 -2.0494 17 1 9.1421 5.1170 -1.3423 18 6 4.3677 0.4474 -0.5302 19 1 -0.3633 0.5137 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 2.4651 1.6777 0.9412 23 1 1.2976 2.1258 -0.3797 24 1 1.2976 0.0157 -2.1595 25 1 2.4651 -1.2106 -1.4950 26 1 2.5245 2.5806 -2.3221 27 1 3.5005 1.3049 -3.1190 28 1 4.3812 3.5012 -1.2592 29 1 5.3092 2.6591 -2.5311 30 1 6.9495 0.5024 -0.3715 31 1 6.6111 0.9190 -2.0686 32 1 10.2757 1.1667 -1.8064 33 1 4.7592 -0.3704 -1.1352 34 1 4.3066 0.1511 0.5170 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307024942.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:13 Heat of formation + Delta-G solvation = 17.434050 kcal Electronic energy + Delta-G solvation = -14196.524656 eV Core-core repulsion = 11936.279206 eV Total energy + Delta-G solvation = -2260.245450 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.68953 -38.29198 -34.98713 -32.58153 -30.41827 -29.00582 -27.24933 -26.67005 -24.58878 -22.79155 -21.57318 -19.63119 -18.34599 -17.01498 -16.87633 -16.27718 -16.26713 -15.46146 -15.21121 -14.66196 -14.21593 -13.97542 -13.77474 -13.36952 -13.29243 -12.89182 -12.80382 -12.46865 -12.19769 -12.14874 -11.89336 -11.71120 -11.47733 -11.32669 -11.15338 -10.62246 -9.69220 -8.99754 -8.21082 -6.32127 1.40589 1.42850 1.53936 2.40202 2.93313 3.10875 3.23149 3.52712 3.76512 3.91410 4.16117 4.18375 4.39841 4.48943 4.53555 4.61767 4.71912 4.77737 4.85795 4.91265 5.00906 5.03204 5.06762 5.15317 5.15993 5.20455 5.34396 5.40156 5.65659 6.04345 6.13990 6.35264 6.58060 6.84457 7.38196 8.90104 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.074893 B = 0.006542 C = 0.006399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.776665 B = 4278.932621 C = 4374.340125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.503 5.503 3 C 0.029 3.971 4 C -0.095 4.095 5 C 0.024 3.976 6 C -0.118 4.118 7 C 0.053 3.947 8 N -0.540 5.540 9 C 0.206 3.794 10 C -0.524 4.524 11 H 0.061 0.939 12 C 0.000 4.000 13 N -0.936 5.936 14 Si 0.973 3.027 15 H -0.273 1.273 16 H -0.280 1.280 17 H -0.263 1.263 18 C 0.072 3.928 19 H 0.045 0.955 20 H 0.073 0.927 21 H 0.072 0.928 22 H 0.079 0.921 23 H 0.091 0.909 24 H 0.094 0.906 25 H 0.084 0.916 26 H 0.098 0.902 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.032 0.968 30 H -0.003 1.003 31 H -0.036 1.036 32 H 0.265 0.735 33 H 0.027 0.973 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.755 0.320 -0.648 16.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 N -0.226 5.226 3 C -0.099 4.099 4 C -0.096 4.096 5 C -0.105 4.105 6 C -0.157 4.157 7 C -0.075 4.075 8 N -0.264 5.264 9 C 0.079 3.921 10 C -0.562 4.562 11 H 0.079 0.921 12 C -0.198 4.198 13 N -0.577 5.577 14 Si 0.797 3.203 15 H -0.198 1.198 16 H -0.206 1.206 17 H -0.188 1.188 18 C -0.056 4.056 19 H 0.064 0.936 20 H 0.092 0.908 21 H 0.091 0.909 22 H 0.098 0.902 23 H 0.109 0.891 24 H 0.112 0.888 25 H 0.102 0.898 26 H 0.116 0.884 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.051 0.949 30 H 0.015 0.985 31 H -0.019 1.019 32 H 0.074 0.926 33 H 0.046 0.954 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.420 0.046 0.321 16.423 hybrid contribution 0.802 0.385 -1.309 1.583 sum -15.617 0.432 -0.988 15.654 Atomic orbital electron populations 1.22894 0.88367 1.02836 1.01744 1.68519 1.10395 1.18902 1.24782 1.23690 0.95730 0.91372 0.99098 1.22295 0.94056 0.96831 0.96422 1.23803 0.96205 0.98909 0.91608 1.22591 0.97459 0.98390 0.97258 1.22699 0.94679 0.97152 0.92992 1.63635 1.02472 1.15010 1.45326 1.19523 0.85504 0.95385 0.91672 1.21458 0.93532 0.96496 1.44740 0.92092 1.25960 0.99697 0.99432 0.94675 1.70094 1.14016 1.26414 1.47155 0.85336 0.77892 0.79019 0.78083 1.19833 1.20589 1.18761 1.22497 0.91123 0.91833 1.00166 0.93624 0.90788 0.90929 0.90223 0.89132 0.88806 0.89790 0.88371 0.91309 0.91258 0.94919 0.98528 1.01878 0.92634 0.95436 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.17 9.64 127.69 1.23 1.06 16 2 N -0.50 -12.18 6.55 -961.07 -6.30 -18.48 16 3 C 0.03 0.73 7.30 85.84 0.63 1.36 16 4 C -0.09 -2.72 0.98 -52.17 -0.05 -2.77 16 5 C 0.02 0.55 7.35 85.83 0.63 1.18 16 6 C -0.12 -3.38 6.35 31.35 0.20 -3.19 16 7 C 0.05 2.06 6.41 86.72 0.56 2.61 16 8 N -0.54 -24.65 5.15 -891.47 -4.59 -29.25 16 9 C 0.21 11.54 4.30 85.56 0.37 11.91 16 10 C -0.52 -30.83 8.66 25.60 0.22 -30.61 16 11 H 0.06 3.52 7.78 -2.91 -0.02 3.50 16 12 C 0.00 0.01 5.46 84.65 0.46 0.47 16 13 N -0.94 -57.77 13.29 21.45 0.28 -57.49 16 14 Si 0.97 45.16 29.54 68.60 2.03 47.18 16 15 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 16 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 17 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 18 C 0.07 2.75 6.09 86.20 0.53 3.27 16 19 H 0.05 0.68 7.64 -2.39 -0.02 0.66 16 20 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 21 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 22 H 0.08 2.24 8.12 -2.39 -0.02 2.22 16 23 H 0.09 1.83 7.83 -2.39 -0.02 1.81 16 24 H 0.09 1.74 7.63 -2.39 -0.02 1.72 16 25 H 0.08 2.05 8.12 -2.39 -0.02 2.03 16 26 H 0.10 2.20 7.99 -2.38 -0.02 2.18 16 27 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.03 1.43 7.31 -2.39 -0.02 1.41 16 30 H 0.00 -0.21 8.07 -2.38 -0.02 -0.23 16 31 H -0.04 -2.19 7.96 -2.39 -0.02 -2.21 16 32 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 33 H 0.03 1.11 7.80 -2.39 -0.02 1.10 16 34 H 0.07 2.70 8.07 -2.38 -0.02 2.68 16 Total: -1.00 -66.25 273.59 -2.77 -69.01 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: 1.04 Total: 3.72 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: 4.77 Total: -14.70 kcal Atomic # 7 Polarization: -94.61 SS G_CDS: -10.61 Total: -105.21 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -66.25 -2.77 -69.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307024942.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.448 kcal (2) G-P(sol) polarization free energy of solvation -66.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds