Wall clock time and date at job start Mon Mar 30 2020 02:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48506 * 109.47043 * 269.99477 * 3 2 1 5 5 H 1.48496 * 109.47093 * 29.99368 * 3 2 1 6 6 H 1.48495 * 109.47004 * 149.99615 * 3 2 1 7 7 C 1.37881 * 119.99607 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00187 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99857 * 180.02562 * 7 2 1 10 10 N 1.46901 * 109.47078 * 179.97438 * 9 7 2 11 11 C 1.48616 * 111.00186 * 287.44776 * 10 9 7 12 12 C 1.55162 * 103.35408 * 200.83526 * 11 10 9 13 13 C 1.53635 * 102.66631 * 36.60478 * 12 11 10 14 14 C 1.53640 * 110.78210 * 99.37448 * 13 12 11 15 15 C 1.55158 * 102.66758 * 99.37303 * 14 13 12 16 16 N 1.48632 * 103.35100 * 36.60520 * 15 14 13 17 17 C 1.48173 * 105.86448 * 321.37701 * 16 15 14 18 18 C 1.48182 * 110.99710 * 169.99692 * 10 9 7 19 19 H 0.97004 * 119.99925 * 0.02562 * 1 2 3 20 20 H 1.09006 * 109.47091 * 59.99527 * 9 7 2 21 21 H 1.08994 * 109.46950 * 299.99628 * 9 7 2 22 22 H 1.08997 * 110.64821 * 319.30324 * 11 10 9 23 23 H 1.09007 * 110.64266 * 82.21281 * 11 10 9 24 24 H 1.09001 * 110.76812 * 278.30877 * 12 11 10 25 25 H 1.08997 * 110.76759 * 154.90317 * 12 11 10 26 26 H 1.09001 * 110.77182 * 217.66853 * 14 13 12 27 27 H 1.09003 * 110.77440 * 341.08292 * 14 13 12 28 28 H 1.08994 * 110.64431 * 278.14009 * 15 14 13 29 29 H 1.08995 * 110.64683 * 155.06721 * 15 14 13 30 30 H 1.00899 * 110.99855 * 81.91728 * 16 15 14 31 31 H 1.09004 * 110.01957 * 265.80859 * 17 16 15 32 32 H 1.08995 * 110.05782 * 144.43344 * 17 16 15 33 33 H 1.08995 * 110.01766 * 26.35384 * 18 10 9 34 34 H 1.09005 * 110.01504 * 264.95479 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 7 4.0011 -2.5792 0.0022 11 6 3.7859 -3.2192 1.3262 12 6 4.7990 -4.3943 1.3251 13 6 6.0047 -3.7990 0.5820 14 6 7.0804 -3.3317 1.5745 15 6 8.0950 -4.5055 1.5542 16 7 8.0854 -4.9429 0.1337 17 6 6.6751 -4.8456 -0.3105 18 6 5.4626 -2.6259 -0.2375 19 1 -0.4850 0.8401 -0.0004 20 1 3.8745 -0.6801 0.8911 21 1 3.8751 -0.6807 -0.8888 22 1 4.0093 -2.5199 2.1319 23 1 2.7642 -3.5895 1.4125 24 1 4.3965 -5.2512 0.7849 25 1 5.0709 -4.6712 2.3437 26 1 7.5491 -2.4096 1.2308 27 1 6.6575 -3.2036 2.5710 28 1 7.7622 -5.3124 2.2070 29 1 9.0876 -4.1604 1.8432 30 1 8.6831 -4.3565 -0.4292 31 1 6.1794 -5.8092 -0.1925 32 1 6.6325 -4.5295 -1.3527 33 1 5.9247 -1.6954 0.0922 34 1 5.6620 -2.7873 -1.2969 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307146109.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:44 Heat of formation + Delta-G solvation = 8.251947 kcal Electronic energy + Delta-G solvation = -14337.534294 eV Core-core repulsion = 12076.890678 eV Total energy + Delta-G solvation = -2260.643616 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.93172 -36.44099 -32.88984 -31.16977 -29.23918 -28.81303 -27.23870 -23.53569 -22.30940 -21.77727 -20.01630 -18.89742 -16.89876 -16.39487 -15.40206 -14.77987 -14.23988 -13.96235 -13.59114 -13.41876 -12.93777 -12.56080 -12.41066 -11.99542 -11.70210 -11.51287 -11.19750 -11.15482 -10.70507 -10.54239 -10.37025 -10.24628 -10.19428 -9.83225 -9.29176 -8.64633 -8.57791 -7.47475 -6.05967 -4.03135 3.26450 3.33813 3.35312 4.19738 4.40537 4.56028 4.64277 4.92766 5.01318 5.23854 5.24413 5.35632 5.43585 5.53680 5.74578 5.80389 5.86409 5.95831 5.99887 6.01727 6.17697 6.26680 6.38017 6.50947 6.55654 6.72861 6.77035 6.91410 7.27188 7.54303 7.87630 7.90774 8.64724 9.03649 9.55837 11.07361 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.057863 B = 0.007508 C = 0.007159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.785662 B = 3728.247271 C = 3910.030213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.507 4.507 8 H 0.080 0.920 9 C 0.154 3.846 10 N -0.504 5.504 11 C 0.050 3.950 12 C -0.109 4.109 13 C -0.099 4.099 14 C -0.146 4.146 15 C 0.043 3.957 16 N -0.678 5.678 17 C 0.057 3.943 18 C 0.045 3.955 19 H 0.263 0.737 20 H -0.010 1.010 21 H 0.022 0.978 22 H 0.035 0.965 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.334 0.666 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.035 0.965 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.934 -6.735 2.761 16.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.545 4.545 8 H 0.098 0.902 9 C 0.027 3.973 10 N -0.228 5.228 11 C -0.078 4.078 12 C -0.147 4.147 13 C -0.101 4.101 14 C -0.185 4.185 15 C -0.086 4.086 16 N -0.305 5.305 17 C -0.072 4.072 18 C -0.083 4.083 19 H 0.073 0.927 20 H 0.007 0.993 21 H 0.040 0.960 22 H 0.053 0.947 23 H 0.101 0.899 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.149 0.851 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.053 0.947 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 14.507 -7.611 2.449 16.564 hybrid contribution 0.580 2.591 0.545 2.711 sum 15.087 -5.020 2.993 16.180 Atomic orbital electron populations 1.69894 1.06086 1.26798 1.51160 1.24908 0.94748 0.98809 0.94915 0.86870 0.80234 0.84115 0.78589 1.20128 1.21124 1.19446 1.21009 0.88645 0.94756 1.50120 0.90177 1.20341 0.97378 0.84617 0.94977 1.64816 1.09937 1.19992 1.28075 1.23105 0.99522 0.94399 0.90811 1.22559 0.94455 0.98529 0.99196 1.21997 0.95974 0.96293 0.95856 1.23185 0.96725 0.98735 0.99887 1.23144 0.98493 0.96050 0.90919 1.62835 1.08267 1.55993 1.03366 1.22822 0.87845 0.98378 0.98202 1.22943 0.90768 0.95440 0.99189 0.92665 0.99285 0.95999 0.94677 0.89948 0.90850 0.91713 0.91560 0.90760 0.90324 0.91155 0.85135 0.90314 0.91205 0.94702 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.87 21.75 27.47 -169.99 -4.67 17.08 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 7 C -0.51 -14.70 9.46 -34.44 -0.33 -15.03 16 8 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 9 C 0.15 3.82 3.54 -4.97 -0.02 3.80 16 10 N -0.50 -10.79 5.25 -232.05 -1.22 -12.00 16 11 C 0.05 0.95 6.14 -1.73 -0.01 0.94 16 12 C -0.11 -1.62 6.03 -25.26 -0.15 -1.77 16 13 C -0.10 -1.39 0.83 -153.83 -0.13 -1.51 16 14 C -0.15 -1.77 6.03 -25.26 -0.15 -1.93 16 15 C 0.04 0.46 7.57 -1.72 -0.01 0.44 16 16 N -0.68 -7.64 7.53 -110.23 -0.83 -8.47 16 17 C 0.06 0.71 6.87 -3.11 -0.02 0.69 16 18 C 0.05 0.78 6.02 -3.11 -0.02 0.76 16 19 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 20 H -0.01 -0.26 6.88 -51.93 -0.36 -0.62 16 21 H 0.02 0.55 7.51 -51.93 -0.39 0.16 16 22 H 0.03 0.68 7.80 -51.93 -0.41 0.28 16 23 H 0.08 1.68 8.14 -51.92 -0.42 1.26 16 24 H 0.07 1.07 7.53 -51.93 -0.39 0.68 16 25 H 0.06 0.85 7.60 -51.93 -0.39 0.45 16 26 H 0.07 0.81 7.53 -51.93 -0.39 0.42 16 27 H 0.07 0.91 7.61 -51.93 -0.39 0.51 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.33 3.32 8.92 -39.29 -0.35 2.97 16 31 H 0.08 1.00 7.37 -51.93 -0.38 0.62 16 32 H 0.07 0.86 7.15 -51.93 -0.37 0.49 16 33 H 0.03 0.61 7.01 -51.93 -0.36 0.24 16 34 H 0.07 1.16 7.15 -51.93 -0.37 0.79 16 LS Contribution 263.79 15.07 3.98 3.98 Total: -1.00 -30.70 263.79 -8.33 -39.02 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -5.42 Total: -0.81 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -0.94 Total: -11.71 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -1.27 Total: -47.56 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.70 -8.33 -39.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307146109.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.277 kcal (2) G-P(sol) polarization free energy of solvation -30.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds