Wall clock time and date at job start Mon Mar 30 2020 02:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48506 * 109.47043 * 269.99477 * 3 2 1 5 5 H 1.48496 * 109.47093 * 29.99368 * 3 2 1 6 6 H 1.48495 * 109.47004 * 149.99615 * 3 2 1 7 7 C 1.37881 * 119.99607 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00187 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99857 * 180.02562 * 7 2 1 10 10 N 1.46901 * 109.47078 * 179.97438 * 9 7 2 11 11 C 1.48616 * 111.00186 * 287.44776 * 10 9 7 12 12 C 1.55162 * 103.35408 * 200.83526 * 11 10 9 13 13 C 1.53635 * 102.66631 * 36.60478 * 12 11 10 14 14 C 1.53640 * 110.78210 * 99.37448 * 13 12 11 15 15 C 1.55158 * 102.66758 * 99.37303 * 14 13 12 16 16 N 1.48632 * 103.35100 * 36.60520 * 15 14 13 17 17 C 1.48173 * 105.86448 * 321.37701 * 16 15 14 18 18 C 1.48182 * 110.99710 * 169.99692 * 10 9 7 19 19 H 0.97004 * 119.99925 * 0.02562 * 1 2 3 20 20 H 1.09006 * 109.47091 * 59.99527 * 9 7 2 21 21 H 1.08994 * 109.46950 * 299.99628 * 9 7 2 22 22 H 1.08997 * 110.64821 * 319.30324 * 11 10 9 23 23 H 1.09007 * 110.64266 * 82.21281 * 11 10 9 24 24 H 1.09001 * 110.76812 * 278.30877 * 12 11 10 25 25 H 1.08997 * 110.76759 * 154.90317 * 12 11 10 26 26 H 1.09001 * 110.77182 * 217.66853 * 14 13 12 27 27 H 1.09003 * 110.77440 * 341.08292 * 14 13 12 28 28 H 1.08994 * 110.64431 * 278.14009 * 15 14 13 29 29 H 1.08995 * 110.64683 * 155.06721 * 15 14 13 30 30 H 1.00899 * 110.99855 * 81.91728 * 16 15 14 31 31 H 1.09004 * 110.01957 * 265.80859 * 17 16 15 32 32 H 1.08995 * 110.05782 * 144.43344 * 17 16 15 33 33 H 1.08995 * 110.01766 * 26.35384 * 18 10 9 34 34 H 1.09005 * 110.01504 * 264.95479 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 7 4.0011 -2.5792 0.0022 11 6 3.7859 -3.2192 1.3262 12 6 4.7990 -4.3943 1.3251 13 6 6.0047 -3.7990 0.5820 14 6 7.0804 -3.3317 1.5745 15 6 8.0950 -4.5055 1.5542 16 7 8.0854 -4.9429 0.1337 17 6 6.6751 -4.8456 -0.3105 18 6 5.4626 -2.6259 -0.2375 19 1 -0.4850 0.8401 -0.0004 20 1 3.8745 -0.6801 0.8911 21 1 3.8751 -0.6807 -0.8888 22 1 4.0093 -2.5199 2.1319 23 1 2.7642 -3.5895 1.4125 24 1 4.3965 -5.2512 0.7849 25 1 5.0709 -4.6712 2.3437 26 1 7.5491 -2.4096 1.2308 27 1 6.6575 -3.2036 2.5710 28 1 7.7622 -5.3124 2.2070 29 1 9.0876 -4.1604 1.8432 30 1 8.6831 -4.3565 -0.4292 31 1 6.1794 -5.8092 -0.1925 32 1 6.6325 -4.5295 -1.3527 33 1 5.9247 -1.6954 0.0922 34 1 5.6620 -2.7873 -1.2969 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307146109.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:44 Heat of formation + Delta-G solvation = -15.755460 kcal Electronic energy + Delta-G solvation = -14338.575333 eV Core-core repulsion = 12076.890678 eV Total energy + Delta-G solvation = -2261.684655 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.12496 -37.79191 -34.94232 -32.78854 -30.20526 -30.14089 -29.06997 -24.99894 -23.78023 -22.92841 -21.63886 -20.07353 -18.97243 -17.49860 -16.75236 -16.49102 -15.72530 -15.44305 -14.96455 -14.68442 -14.53573 -14.29056 -13.75665 -13.30265 -13.08947 -12.88063 -12.75338 -12.37589 -12.19828 -12.08717 -11.91297 -11.71517 -11.55442 -11.41474 -11.32480 -10.82525 -9.55130 -9.15804 -8.32790 -6.36860 1.30273 1.31855 1.42461 2.29976 2.99670 3.24721 3.29454 3.50055 3.68088 3.84715 4.21753 4.26522 4.36114 4.45696 4.57178 4.60302 4.71553 4.75149 4.82437 4.84747 4.93613 4.99963 5.06569 5.09953 5.17321 5.26513 5.31931 5.48927 5.78514 5.93382 6.18339 6.47855 6.56963 6.68970 7.26971 8.84149 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.057863 B = 0.007508 C = 0.007159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.785662 B = 3728.247271 C = 3910.030213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.949 3.051 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.254 1.254 7 C -0.519 4.519 8 H 0.034 0.966 9 C 0.166 3.834 10 N -0.528 5.528 11 C 0.047 3.953 12 C -0.097 4.097 13 C -0.094 4.094 14 C -0.144 4.144 15 C 0.050 3.950 16 N -0.679 5.679 17 C 0.062 3.938 18 C 0.045 3.955 19 H 0.268 0.732 20 H -0.012 1.012 21 H 0.025 0.975 22 H 0.029 0.971 23 H 0.055 0.945 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.343 0.657 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.035 0.965 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.749 -6.450 3.060 19.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.190 4.190 3 Si 0.772 3.228 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.178 1.178 7 C -0.557 4.557 8 H 0.053 0.947 9 C 0.038 3.962 10 N -0.252 5.252 11 C -0.081 4.081 12 C -0.135 4.135 13 C -0.096 4.096 14 C -0.183 4.183 15 C -0.080 4.080 16 N -0.306 5.306 17 C -0.068 4.068 18 C -0.083 4.083 19 H 0.077 0.923 20 H 0.006 0.994 21 H 0.043 0.957 22 H 0.047 0.953 23 H 0.073 0.927 24 H 0.094 0.906 25 H 0.106 0.894 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.159 0.841 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 17.347 -7.350 2.745 19.039 hybrid contribution -0.362 2.414 0.441 2.481 sum 16.985 -4.936 3.186 17.972 Atomic orbital electron populations 1.70050 1.08103 1.28215 1.52356 1.25881 0.95668 1.03202 0.94238 0.85685 0.79187 0.78528 0.79361 1.18833 1.20336 1.17812 1.21228 0.91058 0.93251 1.50181 0.94746 1.20069 0.94487 0.86901 0.94736 1.64678 1.13136 1.17862 1.29479 1.23087 0.99493 0.95854 0.89701 1.22509 0.93429 0.96650 1.00890 1.21967 0.96107 0.95436 0.96113 1.23167 0.96421 0.99532 0.99145 1.23167 0.99097 0.95302 0.90414 1.62823 1.07393 1.56402 1.04002 1.22720 0.88539 0.97613 0.97916 1.23037 0.88010 0.96988 1.00284 0.92301 0.99435 0.95733 0.95274 0.92671 0.90641 0.89368 0.91382 0.90737 0.90059 0.89073 0.84120 0.90425 0.91091 0.94675 0.90542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.17 13.96 21.45 0.30 -59.87 16 2 C 0.01 0.45 5.47 84.66 0.46 0.91 16 3 Si 0.95 44.75 27.47 68.60 1.88 46.64 16 4 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.25 -11.26 6.54 99.48 0.65 -10.61 16 7 C -0.52 -31.07 9.46 25.60 0.24 -30.83 16 8 H 0.03 2.30 8.06 -2.91 -0.02 2.28 16 9 C 0.17 8.25 3.54 85.56 0.30 8.56 16 10 N -0.53 -22.64 5.25 -888.07 -4.66 -27.30 16 11 C 0.05 1.81 6.14 86.71 0.53 2.34 16 12 C -0.10 -2.73 6.03 31.55 0.19 -2.54 16 13 C -0.09 -2.42 0.83 -51.74 -0.04 -2.47 16 14 C -0.14 -3.04 6.03 31.55 0.19 -2.85 16 15 C 0.05 0.85 7.57 86.71 0.66 1.51 16 16 N -0.68 -13.03 7.53 -502.66 -3.78 -16.82 16 17 C 0.06 1.39 6.87 86.06 0.59 1.98 16 18 C 0.04 1.48 6.02 86.06 0.52 1.99 16 19 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 20 H -0.01 -0.59 6.88 -2.38 -0.02 -0.61 16 21 H 0.02 1.20 7.51 -2.39 -0.02 1.19 16 22 H 0.03 1.14 7.80 -2.39 -0.02 1.12 16 23 H 0.05 2.38 8.14 -2.38 -0.02 2.36 16 24 H 0.07 2.10 7.53 -2.39 -0.02 2.08 16 25 H 0.09 2.09 7.60 -2.39 -0.02 2.08 16 26 H 0.07 1.44 7.53 -2.39 -0.02 1.42 16 27 H 0.07 1.59 7.61 -2.39 -0.02 1.58 16 28 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.34 5.64 8.92 -89.69 -0.80 4.84 16 31 H 0.08 1.78 7.37 -2.38 -0.02 1.76 16 32 H 0.07 1.58 7.15 -2.39 -0.02 1.56 16 33 H 0.03 1.16 7.01 -2.39 -0.02 1.14 16 34 H 0.08 2.40 7.15 -2.38 -0.02 2.38 16 Total: -1.00 -67.32 263.79 -2.40 -69.72 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: 0.22 Total: 9.02 kcal Atomic # 6 Polarization: -25.04 SS G_CDS: 3.64 Total: -21.40 kcal Atomic # 7 Polarization: -95.84 SS G_CDS: -8.14 Total: -103.99 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.88 Total: 46.64 kcal Total: -67.32 -2.40 -69.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307146109.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.965 kcal (2) G-P(sol) polarization free energy of solvation -67.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds