Wall clock time and date at job start Mon Mar 30 2020 02:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99450 * 2 1 4 4 H 1.48505 * 109.47340 * 269.99402 * 3 2 1 5 5 H 1.48499 * 109.47354 * 29.99919 * 3 2 1 6 6 H 1.48503 * 109.46922 * 149.99888 * 3 2 1 7 7 C 1.37878 * 120.00310 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99716 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99755 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.46973 * 179.97438 * 9 7 2 11 11 C 1.48625 * 111.00160 * 287.44205 * 10 9 7 12 12 C 1.55151 * 103.35904 * 200.83193 * 11 10 9 13 13 C 1.53635 * 102.66901 * 36.59681 * 12 11 10 14 14 C 1.53634 * 110.80359 * 217.80010 * 13 12 11 15 15 C 1.55151 * 102.83725 * 260.71981 * 14 13 12 16 16 N 1.48631 * 103.35439 * 323.29380 * 15 14 13 17 17 C 1.48177 * 105.85831 * 38.63544 * 16 15 14 18 18 C 1.48178 * 111.00252 * 170.00106 * 10 9 7 19 19 H 0.96995 * 120.00152 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.47723 * 59.99877 * 9 7 2 21 21 H 1.08994 * 109.47619 * 299.99497 * 9 7 2 22 22 H 1.08996 * 110.64592 * 319.30194 * 11 10 9 23 23 H 1.09002 * 110.64502 * 82.20518 * 11 10 9 24 24 H 1.09000 * 110.77686 * 278.29966 * 12 11 10 25 25 H 1.09002 * 110.77059 * 154.89001 * 12 11 10 26 26 H 1.09002 * 110.77163 * 142.32840 * 14 13 12 27 27 H 1.09004 * 110.76800 * 19.10627 * 14 13 12 28 28 H 1.09001 * 110.64871 * 81.76177 * 15 14 13 29 29 H 1.09009 * 110.64157 * 204.66893 * 15 14 13 30 30 H 1.00904 * 111.00279 * 278.09639 * 16 15 14 31 31 H 1.09000 * 110.01655 * 94.17656 * 17 16 15 32 32 H 1.08991 * 110.02177 * 215.52556 * 17 16 15 33 33 H 1.09002 * 110.01974 * 26.35979 * 18 10 9 34 34 H 1.09009 * 110.01358 * 264.97671 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0047 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2059 -3.6156 0.0005 11 6 2.8681 -3.7502 -1.3232 12 6 3.3793 -5.2150 -1.3210 13 6 2.2609 -5.9611 -0.5775 14 6 2.8442 -7.0556 0.3293 15 6 2.6571 -8.3415 -0.5184 16 7 1.3536 -8.1187 -1.1970 17 6 1.3258 -6.6821 -1.5587 18 6 1.5155 -4.9046 0.2407 19 1 -0.4850 0.8400 -0.0004 20 1 0.6248 -2.5571 -0.8896 21 1 0.6243 -2.5567 0.8903 22 1 2.1511 -3.5946 -2.1292 23 1 3.6995 -3.0506 -1.4099 24 1 4.3226 -5.2946 -0.7806 25 1 3.4833 -5.5897 -2.3393 26 1 2.2852 -7.1230 1.2626 27 1 3.9007 -6.8724 0.5257 28 1 3.4593 -8.4398 -1.2499 29 1 2.6137 -9.2218 0.1231 30 1 0.5841 -8.3533 -0.5879 31 1 1.6823 -6.5474 -2.5798 32 1 0.3122 -6.2928 -1.4633 33 1 0.4788 -4.8398 -0.0895 34 1 1.5549 -5.1570 1.3004 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307146110.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:47 Heat of formation + Delta-G solvation = 3.843185 kcal Electronic energy + Delta-G solvation = -14286.758728 eV Core-core repulsion = 12025.923933 eV Total energy + Delta-G solvation = -2260.834794 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.80501 -36.30516 -32.93532 -30.93361 -29.22193 -28.60732 -26.70627 -23.58722 -22.26965 -21.79651 -20.20219 -18.82472 -16.36080 -16.32077 -15.20453 -14.52898 -14.50123 -13.95359 -13.73464 -13.31926 -12.57531 -12.38528 -12.18310 -11.88596 -11.58392 -11.36234 -11.06127 -10.96808 -10.72129 -10.47796 -10.45086 -10.20397 -10.14274 -9.80538 -9.16411 -8.61980 -8.42601 -7.31658 -6.02377 -4.03674 3.32049 3.37991 3.42832 4.25158 4.43153 4.68161 4.72861 4.94175 5.19912 5.31473 5.32597 5.45006 5.53062 5.59065 5.76480 5.93003 5.98597 6.06136 6.06482 6.12219 6.27939 6.35450 6.44337 6.60494 6.67518 6.76425 7.17013 7.29843 7.32318 7.79488 8.01709 8.18531 8.52411 9.04319 9.60691 11.08719 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.070573 B = 0.006807 C = 0.006590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.657614 B = 4112.155554 C = 4247.778255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.054 3.946 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.505 4.505 8 H 0.062 0.938 9 C 0.184 3.816 10 N -0.515 5.515 11 C 0.049 3.951 12 C -0.109 4.109 13 C -0.099 4.099 14 C -0.140 4.140 15 C 0.042 3.958 16 N -0.677 5.677 17 C 0.053 3.947 18 C 0.049 3.951 19 H 0.261 0.739 20 H -0.007 1.007 21 H 0.028 0.972 22 H 0.036 0.964 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.334 0.666 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.036 0.964 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.101 -13.466 -1.506 14.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.543 4.543 8 H 0.081 0.919 9 C 0.059 3.941 10 N -0.239 5.239 11 C -0.079 4.079 12 C -0.148 4.148 13 C -0.101 4.101 14 C -0.179 4.179 15 C -0.088 4.088 16 N -0.304 5.304 17 C -0.077 4.077 18 C -0.080 4.080 19 H 0.071 0.929 20 H 0.011 0.989 21 H 0.046 0.954 22 H 0.054 0.946 23 H 0.095 0.905 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.149 0.851 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.481 -13.494 -1.759 14.327 hybrid contribution -0.451 1.374 0.310 1.479 sum 4.030 -12.120 -1.449 12.855 Atomic orbital electron populations 1.69961 1.06082 1.26766 1.51202 1.25005 0.94878 0.99362 0.95476 0.86487 0.79807 0.83034 0.78032 1.20728 1.21250 1.19768 1.21138 0.93519 0.89887 1.49806 0.91943 1.19883 0.90218 0.87990 0.96045 1.64943 1.29399 1.02087 1.27487 1.23085 0.98735 0.94638 0.91467 1.22580 0.97338 0.95789 0.99059 1.22084 0.96477 0.95729 0.95818 1.23116 1.01829 0.94820 0.98181 1.23159 0.92656 0.96887 0.96087 1.62836 1.04302 1.19168 1.44066 1.22974 0.99180 0.86627 0.98894 1.22870 0.95753 0.90373 0.99001 0.92940 0.98929 0.95416 0.94570 0.90534 0.91222 0.91766 0.91476 0.90656 0.90453 0.91174 0.85086 0.90499 0.91474 0.94529 0.91516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.50 -14.50 8.91 -34.44 -0.31 -14.81 16 8 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 9 C 0.18 4.92 4.47 -4.98 -0.02 4.90 16 10 N -0.51 -11.41 5.25 -232.06 -1.22 -12.63 16 11 C 0.05 0.96 6.14 -1.73 -0.01 0.95 16 12 C -0.11 -1.68 6.19 -25.26 -0.16 -1.83 16 13 C -0.10 -1.46 0.84 -153.57 -0.13 -1.58 16 14 C -0.14 -1.73 6.12 -25.26 -0.15 -1.89 16 15 C 0.04 0.45 7.57 -1.73 -0.01 0.44 16 16 N -0.68 -8.14 7.53 -109.94 -0.83 -8.97 16 17 C 0.05 0.72 6.91 -2.85 -0.02 0.70 16 18 C 0.05 0.89 6.03 -3.11 -0.02 0.87 16 19 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 20 H -0.01 -0.20 7.83 -51.93 -0.41 -0.61 16 21 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 22 H 0.04 0.74 7.80 -51.93 -0.41 0.33 16 23 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 24 H 0.07 1.03 7.44 -51.93 -0.39 0.65 16 25 H 0.06 0.88 7.36 -51.93 -0.38 0.50 16 26 H 0.07 0.82 7.51 -51.93 -0.39 0.43 16 27 H 0.07 0.92 7.41 -51.93 -0.38 0.53 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 30 H 0.33 3.59 8.92 -39.29 -0.35 3.24 16 31 H 0.08 1.06 7.27 -51.93 -0.38 0.69 16 32 H 0.07 0.94 7.18 -51.93 -0.37 0.57 16 33 H 0.04 0.69 6.82 -51.93 -0.35 0.34 16 34 H 0.07 1.19 7.35 -51.92 -0.38 0.81 16 LS Contribution 267.06 15.07 4.02 4.02 Total: -1.00 -30.17 267.06 -8.66 -38.82 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -5.42 Total: -0.94 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -0.93 Total: -10.80 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: -1.31 Total: -47.99 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.17 -8.66 -38.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307146110.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.666 kcal (2) G-P(sol) polarization free energy of solvation -30.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds