Wall clock time and date at job start Mon Mar 30 2020 02:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99450 * 2 1 4 4 H 1.48505 * 109.47340 * 269.99402 * 3 2 1 5 5 H 1.48499 * 109.47354 * 29.99919 * 3 2 1 6 6 H 1.48503 * 109.46922 * 149.99888 * 3 2 1 7 7 C 1.37878 * 120.00310 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99716 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99755 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.46973 * 179.97438 * 9 7 2 11 11 C 1.48625 * 111.00160 * 287.44205 * 10 9 7 12 12 C 1.55151 * 103.35904 * 200.83193 * 11 10 9 13 13 C 1.53635 * 102.66901 * 36.59681 * 12 11 10 14 14 C 1.53634 * 110.80359 * 217.80010 * 13 12 11 15 15 C 1.55151 * 102.83725 * 260.71981 * 14 13 12 16 16 N 1.48631 * 103.35439 * 323.29380 * 15 14 13 17 17 C 1.48177 * 105.85831 * 38.63544 * 16 15 14 18 18 C 1.48178 * 111.00252 * 170.00106 * 10 9 7 19 19 H 0.96995 * 120.00152 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.47723 * 59.99877 * 9 7 2 21 21 H 1.08994 * 109.47619 * 299.99497 * 9 7 2 22 22 H 1.08996 * 110.64592 * 319.30194 * 11 10 9 23 23 H 1.09002 * 110.64502 * 82.20518 * 11 10 9 24 24 H 1.09000 * 110.77686 * 278.29966 * 12 11 10 25 25 H 1.09002 * 110.77059 * 154.89001 * 12 11 10 26 26 H 1.09002 * 110.77163 * 142.32840 * 14 13 12 27 27 H 1.09004 * 110.76800 * 19.10627 * 14 13 12 28 28 H 1.09001 * 110.64871 * 81.76177 * 15 14 13 29 29 H 1.09009 * 110.64157 * 204.66893 * 15 14 13 30 30 H 1.00904 * 111.00279 * 278.09639 * 16 15 14 31 31 H 1.09000 * 110.01655 * 94.17656 * 17 16 15 32 32 H 1.08991 * 110.02177 * 215.52556 * 17 16 15 33 33 H 1.09002 * 110.01974 * 26.35979 * 18 10 9 34 34 H 1.09009 * 110.01358 * 264.97671 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0047 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2059 -3.6156 0.0005 11 6 2.8681 -3.7502 -1.3232 12 6 3.3793 -5.2150 -1.3210 13 6 2.2609 -5.9611 -0.5775 14 6 2.8442 -7.0556 0.3293 15 6 2.6571 -8.3415 -0.5184 16 7 1.3536 -8.1187 -1.1970 17 6 1.3258 -6.6821 -1.5587 18 6 1.5155 -4.9046 0.2407 19 1 -0.4850 0.8400 -0.0004 20 1 0.6248 -2.5571 -0.8896 21 1 0.6243 -2.5567 0.8903 22 1 2.1511 -3.5946 -2.1292 23 1 3.6995 -3.0506 -1.4099 24 1 4.3226 -5.2946 -0.7806 25 1 3.4833 -5.5897 -2.3393 26 1 2.2852 -7.1230 1.2626 27 1 3.9007 -6.8724 0.5257 28 1 3.4593 -8.4398 -1.2499 29 1 2.6137 -9.2218 0.1231 30 1 0.5841 -8.3533 -0.5879 31 1 1.6823 -6.5474 -2.5798 32 1 0.3122 -6.2928 -1.4633 33 1 0.4788 -4.8398 -0.0895 34 1 1.5549 -5.1570 1.3004 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307146110.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:47 Heat of formation + Delta-G solvation = -18.963412 kcal Electronic energy + Delta-G solvation = -14287.747696 eV Core-core repulsion = 12025.923933 eV Total energy + Delta-G solvation = -2261.823762 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.07516 -37.74005 -34.99538 -32.54506 -30.36817 -29.90634 -28.63926 -25.23936 -23.91133 -22.74927 -21.94578 -20.06708 -18.51711 -17.37362 -16.89735 -16.12953 -15.99542 -15.37694 -15.05151 -14.83557 -14.29175 -13.86447 -13.70104 -13.23597 -12.95559 -12.87563 -12.80808 -12.50133 -12.31566 -12.13007 -11.87778 -11.71905 -11.52004 -11.35218 -11.20570 -10.65186 -9.61817 -9.12659 -8.24541 -6.35678 1.38673 1.40605 1.52543 2.37858 3.07593 3.24017 3.37975 3.51548 3.60233 3.95251 4.21726 4.30483 4.34101 4.47192 4.56014 4.65425 4.76003 4.82466 4.87486 4.98637 5.02598 5.04519 5.08209 5.15599 5.23097 5.27634 5.32242 5.60613 5.76481 5.98102 6.23013 6.43051 6.49724 6.80100 7.34665 8.86919 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.070573 B = 0.006807 C = 0.006590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.657614 B = 4112.155554 C = 4247.778255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.973 3.027 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.526 4.526 8 H 0.061 0.939 9 C 0.201 3.799 10 N -0.527 5.527 11 C 0.045 3.955 12 C -0.095 4.095 13 C -0.094 4.094 14 C -0.136 4.136 15 C 0.048 3.952 16 N -0.678 5.678 17 C 0.057 3.943 18 C 0.047 3.953 19 H 0.265 0.735 20 H -0.037 1.037 21 H -0.002 1.002 22 H 0.021 0.979 23 H 0.066 0.934 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.342 0.658 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.023 0.977 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.662 -14.468 -1.645 15.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.797 3.203 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.564 4.564 8 H 0.079 0.921 9 C 0.074 3.926 10 N -0.251 5.251 11 C -0.083 4.083 12 C -0.133 4.133 13 C -0.096 4.096 14 C -0.175 4.175 15 C -0.081 4.081 16 N -0.305 5.305 17 C -0.073 4.073 18 C -0.081 4.081 19 H 0.074 0.926 20 H -0.019 1.019 21 H 0.016 0.984 22 H 0.039 0.961 23 H 0.085 0.915 24 H 0.099 0.901 25 H 0.105 0.895 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.158 0.842 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.041 0.959 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.050 -14.526 -1.899 15.850 hybrid contribution -0.978 1.650 0.367 1.953 sum 5.072 -12.876 -1.532 13.924 Atomic orbital electron populations 1.70090 1.07821 1.28040 1.51689 1.25978 0.95806 1.03413 0.94613 0.85323 0.78502 0.77892 0.78544 1.19618 1.20527 1.18888 1.21435 0.93576 0.91097 1.50265 0.92100 1.19510 0.90204 0.89684 0.93164 1.64833 1.28552 1.02521 1.29222 1.23121 0.97822 0.97731 0.89630 1.22535 0.97663 0.92339 1.00770 1.22046 0.96139 0.95379 0.96071 1.23085 1.02003 0.94481 0.97907 1.23206 0.91999 0.96814 0.96123 1.62836 1.05357 1.17536 1.44768 1.22865 0.98250 0.87617 0.98576 1.22953 0.95355 0.89830 0.99964 0.92578 1.01912 0.98383 0.96053 0.91503 0.90063 0.89458 0.91319 0.89953 0.89890 0.88865 0.84228 0.90423 0.92589 0.95906 0.91194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.66 13.29 21.45 0.28 -57.38 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.97 45.10 29.54 68.60 2.03 47.12 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.53 -30.94 8.91 25.60 0.23 -30.71 16 8 H 0.06 3.52 7.81 -2.91 -0.02 3.50 16 9 C 0.20 11.25 4.47 85.55 0.38 11.64 16 10 N -0.53 -23.93 5.25 -888.11 -4.66 -28.58 16 11 C 0.04 1.77 6.14 86.71 0.53 2.31 16 12 C -0.10 -2.74 6.19 31.55 0.20 -2.54 16 13 C -0.09 -2.63 0.84 -51.57 -0.04 -2.67 16 14 C -0.14 -2.97 6.12 31.55 0.19 -2.78 16 15 C 0.05 0.87 7.57 86.71 0.66 1.52 16 16 N -0.68 -14.54 7.53 -501.75 -3.78 -18.31 16 17 C 0.06 1.47 6.91 86.23 0.60 2.06 16 18 C 0.05 1.75 6.03 86.06 0.52 2.27 16 19 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 20 H -0.04 -2.22 7.83 -2.39 -0.02 -2.24 16 21 H 0.00 -0.12 8.08 -2.39 -0.02 -0.14 16 22 H 0.02 0.89 7.80 -2.39 -0.02 0.87 16 23 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 24 H 0.08 2.18 7.44 -2.39 -0.02 2.16 16 25 H 0.09 2.15 7.36 -2.39 -0.02 2.13 16 26 H 0.07 1.50 7.51 -2.39 -0.02 1.49 16 27 H 0.08 1.72 7.41 -2.38 -0.02 1.71 16 28 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.34 6.54 8.92 -89.69 -0.80 5.74 16 31 H 0.08 2.01 7.27 -2.39 -0.02 1.99 16 32 H 0.06 1.56 7.18 -2.39 -0.02 1.54 16 33 H 0.02 0.90 6.82 -2.39 -0.02 0.88 16 34 H 0.07 2.51 7.35 -2.38 -0.02 2.49 16 Total: -1.00 -65.74 267.06 -2.13 -67.87 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: 0.27 Total: 7.73 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: 3.72 Total: -18.45 kcal Atomic # 7 Polarization: -96.13 SS G_CDS: -8.15 Total: -104.28 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -65.74 -2.13 -67.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307146110.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.911 kcal (2) G-P(sol) polarization free energy of solvation -65.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds