Wall clock time and date at job start Mon Mar 30 2020 02:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99430 * 2 1 4 4 H 1.48500 * 109.47357 * 269.99829 * 3 2 1 5 5 H 1.48502 * 109.47306 * 30.00453 * 3 2 1 6 6 H 1.48500 * 109.46709 * 149.99924 * 3 2 1 7 7 C 1.37867 * 120.00698 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00135 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00369 * 179.97438 * 7 2 1 10 10 N 1.46904 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.47192 * 111.00014 * 292.74343 * 10 9 7 12 12 C 1.51808 * 108.37102 * 171.23402 * 11 10 9 13 13 C 1.51089 * 111.89972 * 57.74243 * 12 11 10 14 14 H 1.08998 * 109.29533 * 188.71568 * 13 12 11 15 15 C 1.53989 * 112.49574 * 66.69114 * 13 12 11 16 16 N 1.48180 * 104.15107 * 199.97459 * 15 13 12 17 17 C 1.47559 * 108.56599 * 23.40659 * 16 15 13 18 18 C 1.54167 * 113.13861 * 311.18282 * 13 12 11 19 19 H 1.09003 * 112.16667 * 279.36730 * 18 13 12 20 20 C 1.46451 * 111.00058 * 170.00245 * 10 9 7 21 21 H 0.97000 * 120.00614 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.47139 * 60.00048 * 9 7 2 23 23 H 1.08993 * 109.47426 * 299.99833 * 9 7 2 24 24 H 1.09000 * 109.73090 * 290.54988 * 11 10 9 25 25 H 1.09004 * 109.72990 * 51.22588 * 11 10 9 26 26 H 1.08992 * 108.18020 * 297.51135 * 12 11 10 27 27 H 1.09004 * 109.44078 * 178.80991 * 12 11 10 28 28 H 1.09001 * 110.49478 * 318.63645 * 15 13 12 29 29 H 1.08994 * 110.49414 * 81.30404 * 15 13 12 30 30 H 1.00899 * 110.99726 * 145.67359 * 16 15 13 31 31 H 1.09003 * 109.92847 * 241.39137 * 17 16 15 32 32 H 1.09000 * 110.10547 * 120.16163 * 17 16 15 33 33 H 1.08998 * 109.15626 * 66.77949 * 20 10 9 34 34 H 1.09005 * 109.15406 * 307.60561 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6528 0.7001 6 1 3.5465 1.4403 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1938 -0.0011 10 7 4.0014 -2.5788 -0.0010 11 6 3.6769 -3.2529 1.2666 12 6 4.0095 -4.7272 1.1232 13 6 5.4599 -4.9450 0.7604 14 1 5.6164 -5.9959 0.5173 15 6 6.4190 -4.5269 1.8902 16 7 7.7210 -4.3374 1.2085 17 6 7.4683 -4.0618 -0.2189 18 6 5.9287 -4.0657 -0.4159 19 1 5.6361 -4.4795 -1.3809 20 6 5.4457 -2.6247 -0.2389 21 1 -0.4851 0.8400 0.0004 22 1 3.8753 -0.6801 0.8889 23 1 3.8746 -0.6798 -0.8911 24 1 4.2721 -2.8256 2.0735 25 1 2.6163 -3.1316 1.4869 26 1 3.3787 -5.1433 0.3378 27 1 3.7952 -5.2403 2.0608 28 1 6.0878 -3.5939 2.3463 29 1 6.4919 -5.3146 2.6400 30 1 8.2463 -3.5883 1.6340 31 1 7.9235 -4.8384 -0.8335 32 1 7.8751 -3.0876 -0.4901 33 1 5.9624 -2.1759 0.6094 34 1 5.6781 -2.0564 -1.1396 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307170613.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:45 Heat of formation + Delta-G solvation = 3.415804 kcal Electronic energy + Delta-G solvation = -14535.875094 eV Core-core repulsion = 12275.021768 eV Total energy + Delta-G solvation = -2260.853327 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.92377 -36.04466 -32.87441 -31.97319 -30.49165 -27.75520 -27.08120 -23.51583 -22.84897 -21.23504 -20.35270 -18.25903 -16.79588 -16.17135 -15.82325 -14.77687 -14.60528 -14.04776 -13.54059 -13.18190 -12.95021 -12.49488 -12.39542 -12.22929 -11.82862 -11.58721 -11.31409 -10.88389 -10.82835 -10.54734 -10.28017 -10.10548 -9.87492 -9.71511 -9.26316 -8.59395 -8.43387 -7.39806 -6.07472 -4.04880 3.25893 3.33384 3.35002 4.27137 4.39446 4.54694 4.75596 5.01176 5.09350 5.24511 5.32807 5.49955 5.60020 5.65996 5.71672 5.80711 5.83391 6.01736 6.06051 6.17813 6.26722 6.32000 6.45212 6.63822 6.67615 6.80852 6.88530 6.96930 7.32959 7.57102 7.90096 8.02201 8.64035 9.01098 9.54271 11.05600 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.050539 B = 0.008388 C = 0.007746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.897860 B = 3337.466469 C = 3613.929946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.874 3.126 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.509 4.509 8 H 0.081 0.919 9 C 0.161 3.839 10 N -0.520 5.520 11 C 0.061 3.939 12 C -0.107 4.107 13 C -0.087 4.087 14 H 0.072 0.928 15 C 0.047 3.953 16 N -0.686 5.686 17 C 0.047 3.953 18 C -0.098 4.098 19 H 0.091 0.909 20 C 0.059 3.941 21 H 0.264 0.736 22 H -0.013 1.013 23 H 0.023 0.977 24 H 0.018 0.982 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.334 0.666 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.015 0.985 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.863 -7.054 2.073 14.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.547 4.547 8 H 0.099 0.901 9 C 0.035 3.965 10 N -0.244 5.244 11 C -0.067 4.067 12 C -0.145 4.145 13 C -0.106 4.106 14 H 0.091 0.909 15 C -0.082 4.082 16 N -0.314 5.314 17 C -0.083 4.083 18 C -0.118 4.118 19 H 0.110 0.890 20 C -0.070 4.070 21 H 0.074 0.926 22 H 0.004 0.996 23 H 0.041 0.959 24 H 0.036 0.964 25 H 0.110 0.890 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.149 0.851 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.034 0.966 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.609 -7.866 1.600 14.947 hybrid contribution 0.489 2.408 0.644 2.540 sum 13.098 -5.457 2.244 14.365 Atomic orbital electron populations 1.69888 1.06088 1.26845 1.51056 1.24894 0.94735 0.98813 0.94865 0.86876 0.80251 0.84103 0.78595 1.20126 1.21143 1.19423 1.21020 0.88652 0.94750 1.50279 0.90066 1.20179 0.97188 0.84215 0.94928 1.62175 1.10307 1.19033 1.32898 1.21891 1.02198 0.92642 0.89995 1.20865 0.94689 0.97496 1.01446 1.21471 0.95098 0.99559 0.94498 0.90914 1.22818 0.88262 1.00328 0.96783 1.62015 1.18508 1.48026 1.02863 1.22883 0.95460 1.00091 0.89839 1.22407 0.93885 0.95997 0.99480 0.89035 1.22056 0.90363 0.95005 0.99597 0.92639 0.99582 0.95903 0.96370 0.89043 0.91033 0.92094 0.93596 0.90664 0.85103 0.90935 0.92959 0.96642 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.87 21.56 27.47 -169.99 -4.67 16.89 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.51 -14.49 8.96 -34.44 -0.31 -14.80 16 8 H 0.08 2.51 7.51 -52.48 -0.39 2.11 16 9 C 0.16 3.95 3.78 -4.97 -0.02 3.93 16 10 N -0.52 -10.95 4.67 -236.95 -1.11 -12.06 16 11 C 0.06 1.16 5.17 -4.27 -0.02 1.14 16 12 C -0.11 -1.65 5.47 -28.30 -0.15 -1.80 16 13 C -0.09 -1.22 2.95 -90.46 -0.27 -1.48 16 14 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 15 C 0.05 0.61 6.54 -2.60 -0.02 0.59 16 16 N -0.69 -8.52 7.41 -110.46 -0.82 -9.34 16 17 C 0.05 0.58 6.92 -2.29 -0.02 0.57 16 18 C -0.10 -1.41 3.68 -88.84 -0.33 -1.74 16 19 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 20 C 0.06 1.02 4.24 -4.07 -0.02 1.00 16 21 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 22 H -0.01 -0.34 7.17 -51.93 -0.37 -0.71 16 23 H 0.02 0.56 7.38 -51.93 -0.38 0.18 16 24 H 0.02 0.34 6.73 -51.93 -0.35 -0.01 16 25 H 0.09 1.97 6.79 -51.93 -0.35 1.62 16 26 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.65 6.21 -51.93 -0.32 0.33 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.33 3.71 8.91 -39.29 -0.35 3.36 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.61 7.77 -51.93 -0.40 0.21 16 33 H 0.02 0.27 7.15 -51.93 -0.37 -0.10 16 34 H 0.07 1.13 7.96 -51.93 -0.41 0.72 16 LS Contribution 258.16 15.07 3.89 3.89 Total: -1.00 -30.01 258.16 -8.59 -38.60 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -5.42 Total: -0.52 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -1.25 Total: -10.70 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: -1.15 Total: -48.17 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.01 -8.59 -38.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307170613.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.018 kcal (2) G-P(sol) polarization free energy of solvation -30.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds