Wall clock time and date at job start Mon Mar 30 2020 02:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99430 * 2 1 4 4 H 1.48500 * 109.47357 * 269.99829 * 3 2 1 5 5 H 1.48502 * 109.47306 * 30.00453 * 3 2 1 6 6 H 1.48500 * 109.46709 * 149.99924 * 3 2 1 7 7 C 1.37867 * 120.00698 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00135 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00369 * 179.97438 * 7 2 1 10 10 N 1.46904 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.47192 * 111.00014 * 292.74343 * 10 9 7 12 12 C 1.51808 * 108.37102 * 171.23402 * 11 10 9 13 13 C 1.51089 * 111.89972 * 57.74243 * 12 11 10 14 14 H 1.08998 * 109.29533 * 188.71568 * 13 12 11 15 15 C 1.53989 * 112.49574 * 66.69114 * 13 12 11 16 16 N 1.48180 * 104.15107 * 199.97459 * 15 13 12 17 17 C 1.47559 * 108.56599 * 23.40659 * 16 15 13 18 18 C 1.54167 * 113.13861 * 311.18282 * 13 12 11 19 19 H 1.09003 * 112.16667 * 279.36730 * 18 13 12 20 20 C 1.46451 * 111.00058 * 170.00245 * 10 9 7 21 21 H 0.97000 * 120.00614 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.47139 * 60.00048 * 9 7 2 23 23 H 1.08993 * 109.47426 * 299.99833 * 9 7 2 24 24 H 1.09000 * 109.73090 * 290.54988 * 11 10 9 25 25 H 1.09004 * 109.72990 * 51.22588 * 11 10 9 26 26 H 1.08992 * 108.18020 * 297.51135 * 12 11 10 27 27 H 1.09004 * 109.44078 * 178.80991 * 12 11 10 28 28 H 1.09001 * 110.49478 * 318.63645 * 15 13 12 29 29 H 1.08994 * 110.49414 * 81.30404 * 15 13 12 30 30 H 1.00899 * 110.99726 * 145.67359 * 16 15 13 31 31 H 1.09003 * 109.92847 * 241.39137 * 17 16 15 32 32 H 1.09000 * 110.10547 * 120.16163 * 17 16 15 33 33 H 1.08998 * 109.15626 * 66.77949 * 20 10 9 34 34 H 1.09005 * 109.15406 * 307.60561 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6528 0.7001 6 1 3.5465 1.4403 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1938 -0.0011 10 7 4.0014 -2.5788 -0.0010 11 6 3.6769 -3.2529 1.2666 12 6 4.0095 -4.7272 1.1232 13 6 5.4599 -4.9450 0.7604 14 1 5.6164 -5.9959 0.5173 15 6 6.4190 -4.5269 1.8902 16 7 7.7210 -4.3374 1.2085 17 6 7.4683 -4.0618 -0.2189 18 6 5.9287 -4.0657 -0.4159 19 1 5.6361 -4.4795 -1.3809 20 6 5.4457 -2.6247 -0.2389 21 1 -0.4851 0.8400 0.0004 22 1 3.8753 -0.6801 0.8889 23 1 3.8746 -0.6798 -0.8911 24 1 4.2721 -2.8256 2.0735 25 1 2.6163 -3.1316 1.4869 26 1 3.3787 -5.1433 0.3378 27 1 3.7952 -5.2403 2.0608 28 1 6.0878 -3.5939 2.3463 29 1 6.4919 -5.3146 2.6400 30 1 8.2463 -3.5883 1.6340 31 1 7.9235 -4.8384 -0.8335 32 1 7.8751 -3.0876 -0.4901 33 1 5.9624 -2.1759 0.6094 34 1 5.6781 -2.0564 -1.1396 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307170613.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:45 Heat of formation + Delta-G solvation = -19.633235 kcal Electronic energy + Delta-G solvation = -14536.874576 eV Core-core repulsion = 12275.021768 eV Total energy + Delta-G solvation = -2261.852808 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.16056 -37.51385 -34.82035 -33.49628 -31.81261 -29.50396 -28.36480 -25.11695 -24.25052 -22.69085 -21.75751 -19.55216 -18.91961 -17.32864 -17.00058 -16.47156 -16.24025 -15.65966 -15.11771 -14.59932 -14.44218 -14.02811 -13.80163 -13.48294 -13.26681 -13.07733 -12.67917 -12.58874 -12.42931 -11.99350 -11.94086 -11.69774 -11.50062 -11.12827 -11.07027 -10.81031 -9.41930 -9.05608 -8.31528 -6.35224 1.31380 1.32576 1.43081 2.30841 3.00676 3.12349 3.29239 3.61678 3.81180 3.93225 4.13424 4.27374 4.36341 4.43913 4.48617 4.58698 4.62287 4.74826 4.84787 4.86191 4.94809 4.96390 5.12744 5.16512 5.24731 5.34124 5.38879 5.50004 5.84444 5.97507 6.32274 6.43351 6.62674 6.70852 7.28475 8.85040 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.050539 B = 0.008388 C = 0.007746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.897860 B = 3337.466469 C = 3613.929946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.009 3.991 3 Si 0.947 3.053 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.255 1.255 7 C -0.517 4.517 8 H 0.038 0.962 9 C 0.171 3.829 10 N -0.537 5.537 11 C 0.063 3.937 12 C -0.098 4.098 13 C -0.086 4.086 14 H 0.089 0.911 15 C 0.051 3.949 16 N -0.685 5.685 17 C 0.054 3.946 18 C -0.098 4.098 19 H 0.093 0.907 20 C 0.060 3.940 21 H 0.268 0.732 22 H -0.017 1.017 23 H 0.027 0.973 24 H 0.023 0.977 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.033 0.967 29 H 0.089 0.911 30 H 0.343 0.657 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.018 0.982 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.462 -7.068 2.163 17.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.189 4.189 3 Si 0.771 3.229 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.179 1.179 7 C -0.555 4.555 8 H 0.057 0.943 9 C 0.044 3.956 10 N -0.261 5.261 11 C -0.065 4.065 12 C -0.136 4.136 13 C -0.105 4.105 14 H 0.107 0.893 15 C -0.077 4.077 16 N -0.314 5.314 17 C -0.076 4.076 18 C -0.118 4.118 19 H 0.111 0.889 20 C -0.068 4.068 21 H 0.077 0.923 22 H 0.001 0.999 23 H 0.045 0.955 24 H 0.041 0.959 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.101 0.899 28 H 0.051 0.949 29 H 0.107 0.893 30 H 0.159 0.841 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.036 0.964 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 15.232 -7.901 1.691 17.242 hybrid contribution -0.378 2.329 0.620 2.439 sum 14.854 -5.572 2.311 16.033 Atomic orbital electron populations 1.70040 1.08055 1.28169 1.52416 1.25837 0.95622 1.03087 0.94325 0.85718 0.79186 0.78719 0.79318 1.18858 1.20492 1.17905 1.21229 0.90949 0.93316 1.50027 0.94343 1.19929 0.94438 0.86555 0.94671 1.62108 1.13118 1.16921 1.33999 1.21830 1.00004 0.95155 0.89481 1.20786 0.95963 0.94591 1.02283 1.21468 0.93871 1.00391 0.94768 0.89303 1.22773 0.88231 1.00127 0.96616 1.62053 1.17994 1.48548 1.02846 1.22860 0.93521 1.01162 0.90058 1.22414 0.95618 0.93938 0.99816 0.88913 1.22148 0.87721 0.97359 0.99607 0.92339 0.99917 0.95530 0.95916 0.92740 0.92183 0.89939 0.94904 0.89277 0.84143 0.89554 0.92120 0.96411 0.91455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.54 13.96 21.44 0.30 -59.24 16 2 C 0.01 0.52 5.47 84.65 0.46 0.98 16 3 Si 0.95 44.42 27.47 68.60 1.88 46.30 16 4 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.26 -11.28 6.54 99.48 0.65 -10.63 16 7 C -0.52 -30.39 8.96 25.60 0.23 -30.16 16 8 H 0.04 2.52 7.51 -2.91 -0.02 2.50 16 9 C 0.17 8.40 3.78 85.56 0.32 8.73 16 10 N -0.54 -22.61 4.67 -903.58 -4.22 -26.83 16 11 C 0.06 2.44 5.17 85.86 0.44 2.89 16 12 C -0.10 -2.93 5.47 29.58 0.16 -2.77 16 13 C -0.09 -2.18 2.95 -10.69 -0.03 -2.21 16 14 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 15 C 0.05 1.19 6.54 86.39 0.56 1.76 16 16 N -0.69 -14.70 7.41 -503.38 -3.73 -18.43 16 17 C 0.05 1.14 6.92 86.93 0.60 1.74 16 18 C -0.10 -2.60 3.68 -9.64 -0.04 -2.63 16 19 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 20 C 0.06 1.98 4.24 86.39 0.37 2.35 16 21 H 0.27 15.65 8.31 -92.71 -0.77 14.87 16 22 H -0.02 -0.83 7.17 -2.38 -0.02 -0.85 16 23 H 0.03 1.28 7.38 -2.39 -0.02 1.26 16 24 H 0.02 0.85 6.73 -2.39 -0.02 0.83 16 25 H 0.05 2.47 6.79 -2.38 -0.02 2.46 16 26 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 28 H 0.03 0.85 6.21 -2.39 -0.01 0.83 16 29 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.34 6.49 8.91 -89.69 -0.80 5.70 16 31 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.06 1.21 7.77 -2.39 -0.02 1.19 16 33 H 0.02 0.58 7.15 -2.39 -0.02 0.57 16 34 H 0.07 2.19 7.96 -2.38 -0.02 2.17 16 Total: -1.00 -65.43 258.16 -2.46 -67.89 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 0.22 Total: 9.65 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: 3.09 Total: -19.34 kcal Atomic # 7 Polarization: -96.85 SS G_CDS: -7.65 Total: -104.50 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.30 kcal Total: -65.43 -2.46 -67.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307170613.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.254 kcal (2) G-P(sol) polarization free energy of solvation -65.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds