Wall clock time and date at job start Mon Mar 30 2020 02:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99798 * 2 1 4 4 H 1.48507 * 109.46621 * 269.99504 * 3 2 1 5 5 H 1.48497 * 109.47203 * 29.99355 * 3 2 1 6 6 H 1.48500 * 109.46901 * 149.99881 * 3 2 1 7 7 C 1.37876 * 120.00196 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00337 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99837 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.46957 * 179.97438 * 9 7 2 11 11 C 1.47175 * 110.99968 * 66.04771 * 10 9 7 12 12 C 1.52676 * 108.46848 * 171.13454 * 11 10 9 13 13 C 1.53097 * 110.65429 * 61.47707 * 12 11 10 14 14 H 1.09000 * 112.06890 * 74.80847 * 13 12 11 15 15 C 1.55203 * 106.65930 * 198.79310 * 13 12 11 16 16 N 1.47567 * 106.99233 * 91.71354 * 15 13 12 17 17 C 1.48155 * 108.58922 * 0.65123 * 16 15 13 18 18 C 1.53997 * 104.10925 * 23.44462 * 17 16 15 19 19 H 1.09006 * 109.12811 * 77.90401 * 18 17 16 20 20 C 1.46662 * 111.00295 * 303.64808 * 10 9 7 21 21 H 0.96994 * 120.00292 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47010 * 60.00014 * 9 7 2 23 23 H 1.08996 * 109.47051 * 299.99632 * 9 7 2 24 24 H 1.09002 * 109.63830 * 51.44320 * 11 10 9 25 25 H 1.09003 * 109.80446 * 290.92432 * 11 10 9 26 26 H 1.09002 * 109.23395 * 181.77059 * 12 11 10 27 27 H 1.09004 * 109.23140 * 301.18741 * 12 11 10 28 28 H 1.09000 * 109.93003 * 211.04673 * 15 13 12 29 29 H 1.09000 * 109.92948 * 332.38291 * 15 13 12 30 30 H 1.00900 * 110.99896 * 238.41886 * 16 15 13 31 31 H 1.08998 * 110.56271 * 264.77638 * 17 16 15 32 32 H 1.08997 * 110.48461 * 142.08270 * 17 16 15 33 33 H 1.08998 * 109.03012 * 304.44978 * 20 10 9 34 34 H 1.09001 * 109.02695 * 63.37257 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 2.9724 -3.6540 1.2562 12 6 3.7792 -4.9497 1.2909 13 6 4.7697 -5.0005 0.1246 14 1 5.6240 -4.3426 0.2839 15 6 5.1779 -6.4879 -0.0481 16 7 4.2469 -7.0796 -1.0283 17 6 3.3020 -6.0298 -1.4756 18 6 4.0516 -4.7114 -1.2083 19 1 4.7898 -4.5545 -1.9948 20 6 3.1239 -3.5222 -1.1393 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6242 -2.5567 0.8903 24 1 2.2882 -3.6258 2.1042 25 1 3.6485 -2.8002 1.3024 26 1 4.3282 -5.0059 2.2309 27 1 3.0987 -5.7984 1.2213 28 1 6.2000 -6.5518 -0.4211 29 1 5.0940 -7.0093 0.9054 30 1 3.7528 -7.8640 -0.6300 31 1 2.3814 -6.0700 -0.8933 32 1 3.0870 -6.1378 -2.5387 33 1 2.5432 -3.4704 -2.0602 34 1 3.7188 -2.6139 -1.0428 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307170617.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:48 Heat of formation + Delta-G solvation = -1.579649 kcal Electronic energy + Delta-G solvation = -14607.809904 eV Core-core repulsion = 12346.739958 eV Total energy + Delta-G solvation = -2261.069946 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.68359 -36.03632 -32.76545 -31.45609 -30.42191 -27.78190 -26.10730 -23.87629 -22.41284 -21.04403 -20.64920 -18.29246 -16.45543 -15.93287 -15.53305 -14.75033 -14.29552 -13.81256 -13.59985 -13.04323 -12.72519 -12.32498 -12.25675 -11.80045 -11.42058 -11.23302 -11.08407 -10.94372 -10.61890 -10.47313 -10.35661 -10.14160 -9.75470 -9.65300 -9.44287 -8.44855 -8.22807 -7.19429 -6.04388 -4.13778 3.25535 3.32566 3.35094 4.38679 4.46281 4.82162 4.93241 5.12130 5.22061 5.26219 5.59033 5.64331 5.73986 5.79266 5.99467 6.00158 6.14441 6.24425 6.29517 6.34920 6.48692 6.54912 6.68570 6.76622 6.84147 7.03454 7.27949 7.50819 7.52124 7.88530 8.05381 8.26405 8.29701 8.96939 9.53260 11.00647 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.054958 B = 0.008095 C = 0.007941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.357309 B = 3457.932839 C = 3524.974886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.065 3.935 3 Si 0.889 3.111 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.550 4.550 8 H 0.057 0.943 9 C 0.186 3.814 10 N -0.533 5.533 11 C 0.060 3.940 12 C -0.109 4.109 13 C -0.105 4.105 14 H 0.081 0.919 15 C 0.050 3.950 16 N -0.689 5.689 17 C 0.055 3.945 18 C -0.088 4.088 19 H 0.069 0.931 20 C 0.070 3.930 21 H 0.262 0.738 22 H 0.031 0.969 23 H 0.030 0.970 24 H 0.064 0.936 25 H 0.037 0.963 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.332 0.668 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.668 -9.932 0.401 12.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.589 4.589 8 H 0.075 0.925 9 C 0.060 3.940 10 N -0.256 5.256 11 C -0.069 4.069 12 C -0.147 4.147 13 C -0.124 4.124 14 H 0.099 0.901 15 C -0.079 4.079 16 N -0.317 5.317 17 C -0.074 4.074 18 C -0.107 4.107 19 H 0.088 0.912 20 C -0.059 4.059 21 H 0.072 0.928 22 H 0.049 0.951 23 H 0.048 0.952 24 H 0.082 0.918 25 H 0.055 0.945 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.147 0.853 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 7.658 -10.221 -0.204 12.773 hybrid contribution 0.335 1.949 0.862 2.157 sum 7.993 -8.272 0.657 11.521 Atomic orbital electron populations 1.69943 1.06011 1.26837 1.50164 1.24968 0.94764 0.99144 0.94927 0.86652 0.79887 0.83664 0.78166 1.20601 1.21114 1.20010 1.21763 0.93335 0.92128 1.51662 0.92464 1.19761 0.90825 0.85519 0.97901 1.62902 1.16025 1.45862 1.00859 1.21872 0.96039 0.95081 0.93867 1.21645 0.97128 0.99321 0.96567 1.22395 0.98185 0.95975 0.95877 0.90086 1.22856 0.97159 0.94006 0.93883 1.62032 1.20380 1.09750 1.39558 1.22710 0.94840 0.89573 1.00251 1.21600 0.97226 0.95493 0.96417 0.91231 1.21281 0.94279 0.94943 0.95434 0.92799 0.95067 0.95173 0.91777 0.94510 0.92710 0.92223 0.91577 0.93259 0.85303 0.92050 0.91140 0.91627 0.93989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 2 C 0.06 1.81 5.46 -17.82 -0.10 1.72 16 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.55 -15.04 7.75 -34.44 -0.27 -15.31 16 8 H 0.06 1.56 5.72 -52.49 -0.30 1.26 16 9 C 0.19 4.76 5.16 -4.98 -0.03 4.74 16 10 N -0.53 -11.28 4.54 -237.52 -1.08 -12.36 16 11 C 0.06 1.16 5.08 -3.84 -0.02 1.14 16 12 C -0.11 -1.67 4.84 -26.85 -0.13 -1.80 16 13 C -0.10 -1.54 3.62 -88.81 -0.32 -1.86 16 14 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 15 C 0.05 0.64 6.88 -2.29 -0.02 0.63 16 16 N -0.69 -9.18 7.40 -110.47 -0.82 -9.99 16 17 C 0.05 0.82 6.54 -2.61 -0.02 0.80 16 18 C -0.09 -1.41 2.93 -90.52 -0.27 -1.67 16 19 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 20 C 0.07 1.36 4.42 -4.97 -0.02 1.34 16 21 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 22 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.03 0.83 8.04 -51.93 -0.42 0.41 16 24 H 0.06 1.26 8.03 -51.93 -0.42 0.85 16 25 H 0.04 0.77 7.12 -51.93 -0.37 0.40 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.93 7.22 -51.93 -0.37 0.55 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.57 7.74 -51.93 -0.40 0.17 16 30 H 0.33 3.89 8.91 -39.29 -0.35 3.54 16 31 H 0.06 0.99 7.32 -51.93 -0.38 0.61 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 1.31 8.13 -51.93 -0.42 0.89 16 34 H 0.04 0.90 6.30 -51.93 -0.33 0.57 16 LS Contribution 260.46 15.07 3.93 3.93 Total: -1.00 -28.41 260.46 -8.87 -37.28 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -5.43 Total: 0.51 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: -1.18 Total: -10.29 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -1.16 Total: -47.82 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -28.41 -8.87 -37.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307170617.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.702 kcal (2) G-P(sol) polarization free energy of solvation -28.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds