Wall clock time and date at job start Mon Mar 30 2020 02:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99798 * 2 1 4 4 H 1.48507 * 109.46621 * 269.99504 * 3 2 1 5 5 H 1.48497 * 109.47203 * 29.99355 * 3 2 1 6 6 H 1.48500 * 109.46901 * 149.99881 * 3 2 1 7 7 C 1.37876 * 120.00196 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00337 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99837 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.46957 * 179.97438 * 9 7 2 11 11 C 1.47175 * 110.99968 * 66.04771 * 10 9 7 12 12 C 1.52676 * 108.46848 * 171.13454 * 11 10 9 13 13 C 1.53097 * 110.65429 * 61.47707 * 12 11 10 14 14 H 1.09000 * 112.06890 * 74.80847 * 13 12 11 15 15 C 1.55203 * 106.65930 * 198.79310 * 13 12 11 16 16 N 1.47567 * 106.99233 * 91.71354 * 15 13 12 17 17 C 1.48155 * 108.58922 * 0.65123 * 16 15 13 18 18 C 1.53997 * 104.10925 * 23.44462 * 17 16 15 19 19 H 1.09006 * 109.12811 * 77.90401 * 18 17 16 20 20 C 1.46662 * 111.00295 * 303.64808 * 10 9 7 21 21 H 0.96994 * 120.00292 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47010 * 60.00014 * 9 7 2 23 23 H 1.08996 * 109.47051 * 299.99632 * 9 7 2 24 24 H 1.09002 * 109.63830 * 51.44320 * 11 10 9 25 25 H 1.09003 * 109.80446 * 290.92432 * 11 10 9 26 26 H 1.09002 * 109.23395 * 181.77059 * 12 11 10 27 27 H 1.09004 * 109.23140 * 301.18741 * 12 11 10 28 28 H 1.09000 * 109.93003 * 211.04673 * 15 13 12 29 29 H 1.09000 * 109.92948 * 332.38291 * 15 13 12 30 30 H 1.00900 * 110.99896 * 238.41886 * 16 15 13 31 31 H 1.08998 * 110.56271 * 264.77638 * 17 16 15 32 32 H 1.08997 * 110.48461 * 142.08270 * 17 16 15 33 33 H 1.08998 * 109.03012 * 304.44978 * 20 10 9 34 34 H 1.09001 * 109.02695 * 63.37257 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 2.9724 -3.6540 1.2562 12 6 3.7792 -4.9497 1.2909 13 6 4.7697 -5.0005 0.1246 14 1 5.6240 -4.3426 0.2839 15 6 5.1779 -6.4879 -0.0481 16 7 4.2469 -7.0796 -1.0283 17 6 3.3020 -6.0298 -1.4756 18 6 4.0516 -4.7114 -1.2083 19 1 4.7898 -4.5545 -1.9948 20 6 3.1239 -3.5222 -1.1393 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6242 -2.5567 0.8903 24 1 2.2882 -3.6258 2.1042 25 1 3.6485 -2.8002 1.3024 26 1 4.3282 -5.0059 2.2309 27 1 3.0987 -5.7984 1.2213 28 1 6.2000 -6.5518 -0.4211 29 1 5.0940 -7.0093 0.9054 30 1 3.7528 -7.8640 -0.6300 31 1 2.3814 -6.0700 -0.8933 32 1 3.0870 -6.1378 -2.5387 33 1 2.5432 -3.4704 -2.0602 34 1 3.7188 -2.6139 -1.0428 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307170617.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:48 Heat of formation + Delta-G solvation = -22.304889 kcal Electronic energy + Delta-G solvation = -14608.708618 eV Core-core repulsion = 12346.739958 eV Total energy + Delta-G solvation = -2261.968660 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.02444 -37.61523 -34.75662 -32.90806 -31.86545 -29.26598 -27.85144 -25.61316 -23.92681 -22.66162 -21.89026 -19.79624 -18.39285 -17.27235 -16.98188 -16.43920 -15.87656 -15.38837 -15.21398 -14.51707 -14.25407 -14.00806 -13.64228 -13.18183 -12.91720 -12.87230 -12.76382 -12.62214 -12.30176 -12.10154 -11.95326 -11.85052 -11.59944 -11.05979 -10.99673 -10.63112 -9.30313 -9.04353 -8.17892 -6.38276 1.34892 1.34971 1.45685 2.34738 3.06589 3.30439 3.42830 3.62503 3.80938 3.98827 4.31052 4.43502 4.51379 4.58651 4.62359 4.65141 4.85374 4.92059 4.95172 5.06156 5.09126 5.15104 5.16761 5.26997 5.32154 5.33991 5.47534 5.71996 5.93115 6.02353 6.24554 6.50982 6.55099 6.83357 7.33604 8.84449 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.054958 B = 0.008095 C = 0.007941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.357309 B = 3457.932839 C = 3524.974886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.011 3.989 3 Si 0.958 3.042 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.558 4.558 8 H 0.057 0.943 9 C 0.198 3.802 10 N -0.529 5.529 11 C 0.059 3.941 12 C -0.098 4.098 13 C -0.105 4.105 14 H 0.087 0.913 15 C 0.057 3.943 16 N -0.688 5.688 17 C 0.062 3.938 18 C -0.087 4.087 19 H 0.079 0.921 20 C 0.076 3.924 21 H 0.266 0.734 22 H 0.004 0.996 23 H 0.004 0.996 24 H 0.054 0.946 25 H 0.018 0.982 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.344 0.656 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.659 -10.741 0.678 14.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.189 4.189 3 Si 0.783 3.217 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.597 4.597 8 H 0.075 0.925 9 C 0.071 3.929 10 N -0.253 5.253 11 C -0.069 4.069 12 C -0.135 4.135 13 C -0.125 4.125 14 H 0.106 0.894 15 C -0.072 4.072 16 N -0.317 5.317 17 C -0.067 4.067 18 C -0.107 4.107 19 H 0.097 0.903 20 C -0.053 4.053 21 H 0.074 0.926 22 H 0.022 0.978 23 H 0.023 0.977 24 H 0.072 0.928 25 H 0.037 0.963 26 H 0.099 0.901 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.160 0.840 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 9.665 -11.056 0.076 14.685 hybrid contribution -0.314 2.171 0.775 2.327 sum 9.351 -8.885 0.852 12.927 Atomic orbital electron populations 1.70065 1.07599 1.27932 1.51037 1.25840 0.95627 1.02919 0.94486 0.85558 0.78652 0.79061 0.78445 1.19868 1.20524 1.19252 1.21989 0.93388 0.92975 1.51311 0.92496 1.19421 0.91285 0.86923 0.95236 1.62842 1.16487 1.43399 1.02545 1.21933 0.95666 0.96930 0.92381 1.21574 0.96968 0.96583 0.98403 1.22431 0.97911 0.97844 0.94299 0.89435 1.22850 0.97369 0.92235 0.94763 1.62020 1.20033 1.09474 1.40178 1.22555 0.94373 0.89440 1.00293 1.21534 0.96764 0.94369 0.98016 0.90279 1.21240 0.93941 0.96056 0.94078 0.92555 0.97832 0.97740 0.92764 0.96325 0.90098 0.91944 0.90434 0.91314 0.83995 0.93582 0.90894 0.92941 0.96199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.67 13.29 21.45 0.28 -55.38 16 2 C 0.01 0.61 5.46 84.65 0.46 1.07 16 3 Si 0.96 44.15 29.54 68.60 2.03 46.17 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.56 -31.24 7.75 25.60 0.20 -31.04 16 8 H 0.06 3.14 5.72 -2.91 -0.02 3.12 16 9 C 0.20 10.61 5.16 85.56 0.44 11.05 16 10 N -0.53 -22.89 4.54 -905.37 -4.11 -27.00 16 11 C 0.06 2.29 5.08 86.14 0.44 2.73 16 12 C -0.10 -2.78 4.84 30.52 0.15 -2.63 16 13 C -0.11 -2.80 3.62 -9.62 -0.03 -2.84 16 14 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 15 C 0.06 1.23 6.88 86.93 0.60 1.83 16 16 N -0.69 -16.15 7.40 -503.42 -3.73 -19.87 16 17 C 0.06 1.75 6.54 86.40 0.57 2.31 16 18 C -0.09 -2.67 2.93 -10.73 -0.03 -2.71 16 19 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 20 C 0.08 2.99 4.42 85.69 0.38 3.37 16 21 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 22 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 23 H 0.00 0.26 8.04 -2.39 -0.02 0.24 16 24 H 0.05 2.16 8.03 -2.39 -0.02 2.14 16 25 H 0.02 0.78 7.12 -2.39 -0.02 0.76 16 26 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.06 1.77 7.22 -2.39 -0.02 1.76 16 28 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.07 1.26 7.74 -2.39 -0.02 1.24 16 30 H 0.34 6.92 8.91 -89.69 -0.80 6.12 16 31 H 0.05 1.43 7.32 -2.39 -0.02 1.42 16 32 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.05 2.16 8.13 -2.39 -0.02 2.14 16 34 H 0.02 0.86 6.30 -2.39 -0.02 0.85 16 Total: -1.00 -61.35 260.46 -2.09 -63.44 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 0.27 Total: 9.50 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: 3.16 Total: -16.86 kcal Atomic # 7 Polarization: -94.70 SS G_CDS: -7.55 Total: -102.25 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -61.35 -2.09 -63.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307170617.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.132 kcal (2) G-P(sol) polarization free energy of solvation -61.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds