Wall clock time and date at job start Mon Mar 30 2020 02:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 119.99803 * 2 1 4 4 H 1.48498 * 109.47173 * 90.00092 * 3 2 1 5 5 H 1.48499 * 109.47350 * 329.99808 * 3 2 1 6 6 H 1.48506 * 109.47071 * 209.99775 * 3 2 1 7 7 C 1.37875 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99914 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00396 * 179.97438 * 7 2 1 10 10 N 1.46897 * 109.47470 * 175.07987 * 9 7 2 11 11 C 1.46291 * 111.00151 * 297.49606 * 10 9 7 12 12 C 1.53893 * 112.05315 * 180.99943 * 11 10 9 13 13 C 1.51645 * 106.74988 * 303.64794 * 12 11 10 14 14 H 1.09001 * 111.31604 * 302.59434 * 13 12 11 15 15 C 1.53074 * 117.25482 * 174.06759 * 13 12 11 16 16 N 1.49149 * 103.46262 * 204.42546 * 15 13 12 17 17 C 1.48739 * 108.26969 * 24.29103 * 16 15 13 18 18 C 1.52177 * 105.73205 * 3.49280 * 17 16 15 19 19 H 1.08995 * 109.81000 * 87.22191 * 18 17 16 20 20 C 1.47800 * 110.99727 * 65.14885 * 10 9 7 21 21 H 0.97005 * 120.00260 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47011 * 295.08453 * 9 7 2 23 23 H 1.09007 * 109.46936 * 55.08126 * 9 7 2 24 24 H 1.08998 * 108.96597 * 301.66202 * 11 10 9 25 25 H 1.09001 * 108.96469 * 60.33705 * 11 10 9 26 26 H 1.08995 * 109.99965 * 184.33968 * 12 11 10 27 27 H 1.09002 * 110.07648 * 62.99993 * 12 11 10 28 28 H 1.09002 * 110.70636 * 85.86230 * 15 13 12 29 29 H 1.08998 * 110.59418 * 322.93838 * 15 13 12 30 30 H 1.00899 * 110.99933 * 146.35720 * 16 15 13 31 31 H 1.08999 * 110.19636 * 244.42607 * 17 16 15 32 32 H 1.08995 * 110.26503 * 122.59441 * 17 16 15 33 33 H 1.08998 * 109.97091 * 294.86211 * 20 10 9 34 34 H 1.08998 * 109.97523 * 56.18512 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 1.4465 2.6527 -0.7001 6 1 3.5466 1.4402 -0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5114 -1.1941 0.0000 10 7 4.0012 -2.5738 0.1195 11 6 3.5820 -3.1710 1.3875 12 6 4.1034 -4.6099 1.5488 13 6 3.6095 -5.3911 0.3466 14 1 2.5228 -5.3554 0.2700 15 6 4.1096 -6.8295 0.1917 16 7 3.9844 -7.0849 -1.2725 17 6 4.0277 -5.7769 -1.9793 18 6 4.2718 -4.7324 -0.8998 19 1 5.3426 -4.6178 -0.7321 20 6 3.6305 -3.3721 -1.0679 21 1 -0.4851 0.8401 0.0004 22 1 3.8744 -0.7590 -0.9312 23 1 3.8751 -0.6052 0.8421 24 1 3.9616 -2.5625 2.2082 25 1 2.4929 -3.1819 1.4310 26 1 3.7096 -5.0485 2.4657 27 1 5.1931 -4.6125 1.5730 28 1 3.4822 -7.5187 0.7570 29 1 5.1494 -6.9102 0.5084 30 1 4.7189 -7.6957 -1.5971 31 1 3.0774 -5.5872 -2.4784 32 1 4.8416 -5.7662 -2.7041 33 1 2.5469 -3.4755 -1.1236 34 1 4.0067 -2.8922 -1.9714 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307170622.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:55 Heat of formation + Delta-G solvation = 5.435167 kcal Electronic energy + Delta-G solvation = -14519.884154 eV Core-core repulsion = 12259.118394 eV Total energy + Delta-G solvation = -2260.765761 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.66359 -36.20801 -32.84527 -31.66287 -30.45171 -27.78981 -26.69183 -23.66415 -22.28306 -20.60203 -20.28378 -19.42511 -16.89608 -16.01424 -14.90542 -14.78937 -14.39317 -14.01341 -13.71157 -12.95289 -12.80312 -12.54799 -12.26310 -12.22513 -11.70388 -11.45857 -11.11255 -10.88016 -10.48678 -10.43769 -10.34099 -10.03691 -9.91969 -9.60582 -9.45013 -8.60305 -8.39425 -7.13784 -6.11276 -4.11043 3.26726 3.34523 3.38479 4.29485 4.38763 4.63111 4.84464 4.96124 5.21234 5.31568 5.43192 5.65397 5.69751 5.81655 5.86437 5.89115 6.05393 6.21044 6.23632 6.31104 6.41587 6.51218 6.62327 6.75163 6.82851 6.89670 6.98577 7.06198 7.40184 7.56474 8.04806 8.17594 8.44540 8.91318 9.51675 11.01770 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.052671 B = 0.008130 C = 0.007949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.469875 B = 3443.355290 C = 3521.740388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.071 3.929 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.551 4.551 8 H 0.074 0.926 9 C 0.159 3.841 10 N -0.547 5.547 11 C 0.067 3.933 12 C -0.102 4.102 13 C -0.104 4.104 14 H 0.082 0.918 15 C 0.053 3.947 16 N -0.685 5.685 17 C 0.054 3.946 18 C -0.115 4.115 19 H 0.073 0.927 20 C 0.084 3.916 21 H 0.263 0.737 22 H 0.027 0.973 23 H 0.024 0.976 24 H 0.062 0.938 25 H 0.044 0.956 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.042 0.958 30 H 0.332 0.668 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.414 -9.969 -0.185 13.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.589 4.589 8 H 0.092 0.908 9 C 0.032 3.968 10 N -0.271 5.271 11 C -0.062 4.062 12 C -0.140 4.140 13 C -0.123 4.123 14 H 0.100 0.900 15 C -0.076 4.076 16 N -0.314 5.314 17 C -0.075 4.075 18 C -0.135 4.135 19 H 0.091 0.909 20 C -0.044 4.044 21 H 0.073 0.927 22 H 0.045 0.955 23 H 0.042 0.958 24 H 0.081 0.919 25 H 0.063 0.937 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.060 0.940 30 H 0.147 0.853 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.030 -9.903 -0.184 13.403 hybrid contribution 0.339 1.203 0.072 1.252 sum 9.369 -8.701 -0.112 12.786 Atomic orbital electron populations 1.69929 1.06377 1.26997 1.50428 1.24978 0.94698 0.99235 0.94206 0.86788 0.80391 0.83566 0.78606 1.20208 1.21294 1.18885 1.21695 0.90730 0.94637 1.51868 0.90821 1.20104 0.94538 0.85452 0.96686 1.61593 1.60932 1.03823 1.00762 1.21795 0.99187 0.92899 0.92288 1.21429 1.00437 0.95574 0.96572 1.22078 1.00877 0.93107 0.96244 0.90012 1.22598 0.99134 0.96873 0.89004 1.62684 1.51503 1.13327 1.03843 1.22277 1.01480 0.88016 0.95737 1.22132 1.00542 0.95587 0.95214 0.90862 1.21484 0.98396 0.90948 0.93607 0.92682 0.95472 0.95766 0.91919 0.93726 0.91964 0.91901 0.90649 0.93999 0.85323 0.90525 0.92883 0.93523 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 21.47 27.37 -169.99 -4.65 16.82 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.26 -6.22 6.69 56.52 0.38 -5.84 16 7 C -0.55 -15.38 8.21 -34.44 -0.28 -15.66 16 8 H 0.07 2.25 6.35 -52.49 -0.33 1.91 16 9 C 0.16 3.84 4.14 -4.98 -0.02 3.82 16 10 N -0.55 -11.45 4.70 -236.28 -1.11 -12.56 16 11 C 0.07 1.30 5.17 -3.69 -0.02 1.28 16 12 C -0.10 -1.56 5.86 -26.95 -0.16 -1.72 16 13 C -0.10 -1.59 2.53 -89.80 -0.23 -1.82 16 14 H 0.08 1.43 8.06 -51.93 -0.42 1.01 16 15 C 0.05 0.67 7.24 -2.53 -0.02 0.65 16 16 N -0.69 -8.83 7.48 -111.05 -0.83 -9.66 16 17 C 0.05 0.74 7.32 -3.22 -0.02 0.72 16 18 C -0.12 -1.80 2.39 -90.42 -0.22 -2.02 16 19 H 0.07 1.15 7.97 -51.93 -0.41 0.74 16 20 C 0.08 1.62 4.96 -4.17 -0.02 1.60 16 21 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 22 H 0.03 0.67 7.52 -51.93 -0.39 0.28 16 23 H 0.02 0.59 7.30 -51.93 -0.38 0.21 16 24 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 25 H 0.04 0.99 6.68 -51.93 -0.35 0.65 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 0.92 8.02 -51.93 -0.42 0.50 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.33 3.51 8.93 -39.29 -0.35 3.16 16 31 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 1.02 6.83 -51.93 -0.35 0.67 16 34 H 0.06 1.23 8.13 -51.93 -0.42 0.81 16 LS Contribution 260.61 15.07 3.93 3.93 Total: -1.00 -29.69 260.61 -8.50 -38.19 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -5.52 Total: 1.19 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -1.08 Total: -11.18 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: -1.17 Total: -48.94 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.65 Total: 16.82 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.69 -8.50 -38.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307170622.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.621 kcal (2) G-P(sol) polarization free energy of solvation -29.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds