Wall clock time and date at job start Mon Mar 30 2020 02:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 119.99803 * 2 1 4 4 H 1.48498 * 109.47173 * 90.00092 * 3 2 1 5 5 H 1.48499 * 109.47350 * 329.99808 * 3 2 1 6 6 H 1.48506 * 109.47071 * 209.99775 * 3 2 1 7 7 C 1.37875 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99914 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00396 * 179.97438 * 7 2 1 10 10 N 1.46897 * 109.47470 * 175.07987 * 9 7 2 11 11 C 1.46291 * 111.00151 * 297.49606 * 10 9 7 12 12 C 1.53893 * 112.05315 * 180.99943 * 11 10 9 13 13 C 1.51645 * 106.74988 * 303.64794 * 12 11 10 14 14 H 1.09001 * 111.31604 * 302.59434 * 13 12 11 15 15 C 1.53074 * 117.25482 * 174.06759 * 13 12 11 16 16 N 1.49149 * 103.46262 * 204.42546 * 15 13 12 17 17 C 1.48739 * 108.26969 * 24.29103 * 16 15 13 18 18 C 1.52177 * 105.73205 * 3.49280 * 17 16 15 19 19 H 1.08995 * 109.81000 * 87.22191 * 18 17 16 20 20 C 1.47800 * 110.99727 * 65.14885 * 10 9 7 21 21 H 0.97005 * 120.00260 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47011 * 295.08453 * 9 7 2 23 23 H 1.09007 * 109.46936 * 55.08126 * 9 7 2 24 24 H 1.08998 * 108.96597 * 301.66202 * 11 10 9 25 25 H 1.09001 * 108.96469 * 60.33705 * 11 10 9 26 26 H 1.08995 * 109.99965 * 184.33968 * 12 11 10 27 27 H 1.09002 * 110.07648 * 62.99993 * 12 11 10 28 28 H 1.09002 * 110.70636 * 85.86230 * 15 13 12 29 29 H 1.08998 * 110.59418 * 322.93838 * 15 13 12 30 30 H 1.00899 * 110.99933 * 146.35720 * 16 15 13 31 31 H 1.08999 * 110.19636 * 244.42607 * 17 16 15 32 32 H 1.08995 * 110.26503 * 122.59441 * 17 16 15 33 33 H 1.08998 * 109.97091 * 294.86211 * 20 10 9 34 34 H 1.08998 * 109.97523 * 56.18512 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 1.4465 2.6527 -0.7001 6 1 3.5466 1.4402 -0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5114 -1.1941 0.0000 10 7 4.0012 -2.5738 0.1195 11 6 3.5820 -3.1710 1.3875 12 6 4.1034 -4.6099 1.5488 13 6 3.6095 -5.3911 0.3466 14 1 2.5228 -5.3554 0.2700 15 6 4.1096 -6.8295 0.1917 16 7 3.9844 -7.0849 -1.2725 17 6 4.0277 -5.7769 -1.9793 18 6 4.2718 -4.7324 -0.8998 19 1 5.3426 -4.6178 -0.7321 20 6 3.6305 -3.3721 -1.0679 21 1 -0.4851 0.8401 0.0004 22 1 3.8744 -0.7590 -0.9312 23 1 3.8751 -0.6052 0.8421 24 1 3.9616 -2.5625 2.2082 25 1 2.4929 -3.1819 1.4310 26 1 3.7096 -5.0485 2.4657 27 1 5.1931 -4.6125 1.5730 28 1 3.4822 -7.5187 0.7570 29 1 5.1494 -6.9102 0.5084 30 1 4.7189 -7.6957 -1.5971 31 1 3.0774 -5.5872 -2.4784 32 1 4.8416 -5.7662 -2.7041 33 1 2.5469 -3.4755 -1.1236 34 1 4.0067 -2.8922 -1.9714 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307170622.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:55 Heat of formation + Delta-G solvation = -17.598773 kcal Electronic energy + Delta-G solvation = -14520.882981 eV Core-core repulsion = 12259.118394 eV Total energy + Delta-G solvation = -2261.764587 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.99630 -37.72717 -34.81339 -33.25010 -31.88413 -29.36167 -28.27597 -25.28872 -23.88502 -22.02307 -21.64809 -20.93390 -19.00584 -17.14592 -16.68323 -16.25284 -15.85918 -15.71042 -15.28069 -14.59287 -14.32995 -14.04787 -13.72388 -13.57907 -13.23266 -13.01162 -12.77788 -12.55947 -12.14061 -11.98372 -11.89751 -11.76995 -11.60266 -11.35326 -10.87925 -10.81640 -9.39933 -8.97601 -8.34514 -6.40242 1.33861 1.35346 1.47897 2.31658 3.00221 3.13994 3.26542 3.49321 3.77160 3.98358 4.23204 4.38655 4.49699 4.53844 4.58951 4.69552 4.71875 4.84754 4.89277 4.97202 4.99012 5.04783 5.08565 5.15285 5.21230 5.27497 5.42271 5.52653 5.77853 6.06079 6.32689 6.45756 6.54592 6.66296 7.26832 8.82207 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.052671 B = 0.008130 C = 0.007949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.469875 B = 3443.355290 C = 3521.740388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.008 3.992 3 Si 0.953 3.047 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.245 1.245 7 C -0.551 4.551 8 H 0.028 0.972 9 C 0.164 3.836 10 N -0.540 5.540 11 C 0.065 3.935 12 C -0.089 4.089 13 C -0.105 4.105 14 H 0.046 0.954 15 C 0.062 3.938 16 N -0.692 5.692 17 C 0.059 3.941 18 C -0.107 4.107 19 H 0.087 0.913 20 C 0.086 3.914 21 H 0.266 0.734 22 H 0.030 0.970 23 H 0.031 0.969 24 H 0.066 0.934 25 H 0.001 0.999 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.350 0.650 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.005 0.995 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.317 -10.475 -0.025 16.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.190 4.190 3 Si 0.776 3.224 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.168 1.168 7 C -0.590 4.590 8 H 0.046 0.954 9 C 0.037 3.963 10 N -0.263 5.263 11 C -0.063 4.063 12 C -0.127 4.127 13 C -0.125 4.125 14 H 0.065 0.935 15 C -0.066 4.066 16 N -0.322 5.322 17 C -0.070 4.070 18 C -0.127 4.127 19 H 0.105 0.895 20 C -0.042 4.042 21 H 0.075 0.925 22 H 0.048 0.952 23 H 0.049 0.951 24 H 0.085 0.915 25 H 0.020 0.980 26 H 0.100 0.900 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.085 0.915 30 H 0.167 0.833 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.024 0.976 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.956 -10.445 -0.025 15.876 hybrid contribution -0.647 1.284 0.018 1.438 sum 11.309 -9.161 -0.006 14.554 Atomic orbital electron populations 1.70088 1.08458 1.28254 1.52124 1.25984 0.95575 1.03643 0.93752 0.85620 0.79473 0.77988 0.79313 1.19028 1.20912 1.16832 1.21893 0.92885 0.92995 1.51199 0.95388 1.19987 0.91650 0.87826 0.96873 1.61659 1.59965 1.02811 1.01890 1.21876 0.96741 0.96004 0.91685 1.21349 1.01531 0.92320 0.97468 1.22034 0.98892 0.95379 0.96157 0.93511 1.22548 1.00520 0.94560 0.89001 1.62599 1.52763 1.12936 1.03932 1.22190 1.01492 0.87777 0.95571 1.22042 1.00614 0.93642 0.96410 0.89475 1.21471 0.96252 0.93340 0.93181 0.92467 0.95182 0.95098 0.91529 0.98019 0.90020 0.89691 0.89925 0.91524 0.83319 0.92487 0.90308 0.97646 0.91455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.17 13.96 21.45 0.30 -59.87 16 2 C 0.01 0.49 5.47 84.66 0.46 0.95 16 3 Si 0.95 44.28 27.37 68.60 1.88 46.16 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.24 -10.54 6.69 99.48 0.67 -9.88 16 7 C -0.55 -32.03 8.21 25.60 0.21 -31.82 16 8 H 0.03 1.84 6.35 -2.91 -0.02 1.82 16 9 C 0.16 7.95 4.14 85.56 0.35 8.30 16 10 N -0.54 -22.59 4.70 -901.46 -4.24 -26.83 16 11 C 0.07 2.56 5.17 86.72 0.45 3.01 16 12 C -0.09 -2.56 5.86 30.45 0.18 -2.38 16 13 C -0.11 -3.11 2.53 -10.26 -0.03 -3.14 16 14 H 0.05 1.71 8.06 -2.39 -0.02 1.69 16 15 C 0.06 1.40 7.24 85.89 0.62 2.02 16 16 N -0.69 -16.00 7.48 -505.24 -3.78 -19.78 16 17 C 0.06 1.52 7.32 85.67 0.63 2.15 16 18 C -0.11 -3.22 2.39 -10.66 -0.03 -3.24 16 19 H 0.09 2.44 7.97 -2.39 -0.02 2.42 16 20 C 0.09 3.38 4.96 85.58 0.42 3.80 16 21 H 0.27 15.73 8.31 -92.70 -0.77 14.96 16 22 H 0.03 1.44 7.52 -2.39 -0.02 1.42 16 23 H 0.03 1.46 7.30 -2.38 -0.02 1.44 16 24 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 25 H 0.00 0.07 6.68 -2.39 -0.02 0.05 16 26 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.08 2.15 8.02 -2.39 -0.02 2.13 16 28 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.35 6.11 8.93 -89.69 -0.80 5.31 16 31 H 0.06 1.68 8.10 -2.39 -0.02 1.67 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.01 0.25 6.83 -2.39 -0.02 0.23 16 34 H 0.07 2.56 8.13 -2.39 -0.02 2.54 16 Total: -1.00 -66.75 260.61 -2.34 -69.09 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 0.23 Total: 11.58 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: 3.28 Total: -20.35 kcal Atomic # 7 Polarization: -98.76 SS G_CDS: -7.72 Total: -106.48 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.88 Total: 46.16 kcal Total: -66.75 -2.34 -69.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307170622.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.493 kcal (2) G-P(sol) polarization free energy of solvation -66.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds