Wall clock time and date at job start Mon Mar 30 2020 02:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99762 * 2 1 4 4 H 1.48502 * 109.47183 * 239.99807 * 3 2 1 5 5 H 1.48499 * 109.47271 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47448 * 119.99837 * 3 2 1 7 7 C 1.37874 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99464 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00416 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47557 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47533 * 180.02562 * 10 9 7 12 12 C 1.48398 * 112.30029 * 313.02683 * 11 10 9 13 13 C 1.53028 * 110.89333 * 181.85529 * 12 11 10 14 14 N 1.47916 * 108.90473 * 54.25416 * 13 12 11 15 15 C 1.48362 * 108.42813 * 48.12055 * 14 13 12 16 16 C 1.54068 * 106.57018 * 273.64766 * 15 14 13 17 17 C 1.47843 * 111.00072 * 190.00191 * 11 10 9 18 18 H 1.08999 * 113.01213 * 313.67219 * 17 11 10 19 19 C 1.48939 * 107.56298 * 295.11047 * 14 13 12 20 20 H 0.96999 * 120.00229 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.46905 * 59.99476 * 9 7 2 22 22 H 1.09004 * 109.46921 * 300.00071 * 9 7 2 23 23 H 1.08998 * 109.46948 * 59.99797 * 10 9 7 24 24 H 1.08996 * 109.47177 * 300.00247 * 10 9 7 25 25 H 1.08997 * 109.18095 * 61.32676 * 12 11 10 26 26 H 1.08994 * 108.87765 * 302.19207 * 12 11 10 27 27 H 1.09005 * 109.56185 * 294.43324 * 13 12 11 28 28 H 1.08989 * 109.56691 * 174.08505 * 13 12 11 29 29 H 1.09000 * 110.03813 * 32.92912 * 15 14 13 30 30 H 1.09004 * 110.03624 * 154.37063 * 15 14 13 31 31 H 1.08994 * 110.38321 * 117.15477 * 16 15 14 32 32 H 1.09010 * 110.38378 * 239.51258 * 16 15 14 33 33 H 1.08995 * 110.97819 * 189.96109 * 19 14 13 34 34 H 1.08998 * 110.97928 * 313.74152 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5109 -4.9343 -0.0001 12 6 0.4177 -4.9539 1.0032 13 6 -0.2955 -6.3078 1.0069 14 7 0.7076 -7.3773 1.2021 15 6 1.5793 -7.0003 2.3419 16 6 2.7036 -6.1203 1.7630 17 6 2.4231 -6.0728 0.2396 18 1 3.3305 -6.0258 -0.3625 19 6 1.6054 -7.3737 0.0138 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 2.8720 -3.6042 0.8905 24 1 2.8720 -3.6043 -0.8894 25 1 -0.3001 -4.1686 0.7662 26 1 0.8411 -4.7664 1.9899 27 1 -0.8049 -6.4546 0.0545 28 1 -1.0216 -6.3357 1.8192 29 1 1.0070 -6.4379 3.0797 30 1 2.0029 -7.8943 2.7997 31 1 2.6584 -5.1179 2.1887 32 1 3.6768 -6.5720 1.9558 33 1 2.2559 -8.2482 0.0135 34 1 1.0298 -7.3172 -0.9101 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307273479.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:23 Heat of formation + Delta-G solvation = 19.181560 kcal Electronic energy + Delta-G solvation = -14524.001513 eV Core-core repulsion = 12263.831841 eV Total energy + Delta-G solvation = -2260.169672 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.63264 -35.12401 -32.75695 -31.61186 -29.51521 -28.93972 -26.04474 -23.71682 -23.34322 -20.55685 -20.39236 -18.91158 -16.75186 -15.99224 -15.52486 -14.57656 -14.39891 -14.05538 -13.92649 -13.27109 -12.57363 -12.37304 -12.16746 -11.90176 -11.56350 -11.16994 -11.14618 -11.02152 -10.89868 -10.61971 -10.53104 -10.47004 -9.95764 -9.41284 -9.15928 -8.43426 -8.37176 -7.66868 -6.03124 -4.05880 3.31091 3.35595 3.37870 4.09880 4.32260 4.46771 4.86989 5.04477 5.14715 5.32641 5.38242 5.40796 5.51954 5.59144 5.70969 5.80198 5.94411 5.99727 6.06317 6.12677 6.21892 6.27377 6.44370 6.48891 6.85318 6.91157 7.03288 7.46680 7.51672 7.71064 7.82076 8.01502 8.39398 9.00566 9.58040 11.08205 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.060975 B = 0.007212 C = 0.006926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.092334 B = 3881.537019 C = 4041.621560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.053 0.947 9 C 0.024 3.976 10 C 0.063 3.937 11 N -0.531 5.531 12 C 0.017 3.983 13 C 0.035 3.965 14 N -0.499 5.499 15 C 0.028 3.972 16 C -0.185 4.185 17 C 0.043 3.957 18 H 0.097 0.903 19 C 0.035 3.965 20 H 0.261 0.739 21 H 0.024 0.976 22 H 0.017 0.983 23 H 0.020 0.980 24 H 0.063 0.937 25 H 0.091 0.909 26 H 0.038 0.962 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.660 -12.693 2.682 13.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.063 4.063 11 N -0.255 5.255 12 C -0.112 4.112 13 C -0.094 4.094 14 N -0.220 5.220 15 C -0.100 4.100 16 C -0.225 4.225 17 C -0.068 4.068 18 H 0.115 0.885 19 C -0.094 4.094 20 H 0.071 0.929 21 H 0.042 0.958 22 H 0.036 0.964 23 H 0.038 0.962 24 H 0.081 0.919 25 H 0.110 0.890 26 H 0.056 0.944 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.962 -13.177 2.310 13.521 hybrid contribution 1.321 2.038 0.746 2.541 sum 3.283 -11.139 3.056 12.008 Atomic orbital electron populations 1.69951 1.06032 1.26769 1.50498 1.24990 0.94847 0.99205 0.95212 0.86645 0.79582 0.83082 0.78612 1.20183 1.21213 1.20309 1.21143 0.92954 0.91037 1.51115 0.92842 1.19177 0.94047 0.90477 0.97654 1.22323 0.97002 0.88056 0.98930 1.62961 1.11053 1.03447 1.48039 1.23008 0.95296 0.98689 0.94215 1.22713 0.94974 0.89132 1.02577 1.66781 1.11502 1.40372 1.03375 1.23076 0.93680 0.98384 0.94900 1.23515 0.99565 1.01092 0.98311 1.23699 0.96236 0.93197 0.93654 0.88462 1.23572 0.95270 0.95905 0.94615 0.92891 0.95783 0.96449 0.96170 0.91872 0.89045 0.94436 0.90056 0.90347 0.91213 0.90646 0.90768 0.91518 0.90196 0.89454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.85 13.29 55.43 0.74 -26.12 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.62 4.31 -27.89 -0.12 0.50 16 10 C 0.06 1.36 5.08 -3.83 -0.02 1.34 16 11 N -0.53 -9.75 4.84 -221.92 -1.07 -10.82 16 12 C 0.02 0.29 4.29 -2.98 -0.01 0.28 16 13 C 0.03 0.51 5.96 -3.25 -0.02 0.49 16 14 N -0.50 -6.99 6.16 -228.52 -1.41 -8.40 16 15 C 0.03 0.37 6.21 -2.46 -0.02 0.36 16 16 C -0.18 -2.60 5.73 -25.13 -0.14 -2.74 16 17 C 0.04 0.64 3.86 -64.93 -0.25 0.39 16 18 H 0.10 1.40 8.13 -51.93 -0.42 0.97 16 19 C 0.04 0.47 6.54 -1.47 -0.01 0.46 16 20 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 21 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 22 H 0.02 0.47 6.45 -51.93 -0.33 0.14 16 23 H 0.02 0.43 6.80 -51.93 -0.35 0.08 16 24 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 25 H 0.09 1.81 6.43 -51.93 -0.33 1.48 16 26 H 0.04 0.67 5.24 -51.93 -0.27 0.40 16 27 H 0.08 1.19 7.91 -51.93 -0.41 0.78 16 28 H 0.08 1.04 8.14 -51.94 -0.42 0.62 16 29 H 0.07 0.93 7.07 -51.93 -0.37 0.56 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.20 5.62 -51.93 -0.29 0.91 16 32 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.09 1.21 7.86 -51.93 -0.41 0.80 16 LS Contribution 258.09 15.07 3.89 3.89 Total: -1.00 -29.61 258.09 -9.15 -38.76 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -5.27 Total: -1.45 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -1.00 Total: -12.54 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: -1.74 Total: -45.33 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.61 -9.15 -38.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307273479.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.937 kcal (2) G-P(sol) polarization free energy of solvation -29.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds