Wall clock time and date at job start Mon Mar 30 2020 02:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99762 * 2 1 4 4 H 1.48502 * 109.47183 * 239.99807 * 3 2 1 5 5 H 1.48499 * 109.47271 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47448 * 119.99837 * 3 2 1 7 7 C 1.37874 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99464 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00416 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47557 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47533 * 180.02562 * 10 9 7 12 12 C 1.48398 * 112.30029 * 313.02683 * 11 10 9 13 13 C 1.53028 * 110.89333 * 181.85529 * 12 11 10 14 14 N 1.47916 * 108.90473 * 54.25416 * 13 12 11 15 15 C 1.48362 * 108.42813 * 48.12055 * 14 13 12 16 16 C 1.54068 * 106.57018 * 273.64766 * 15 14 13 17 17 C 1.47843 * 111.00072 * 190.00191 * 11 10 9 18 18 H 1.08999 * 113.01213 * 313.67219 * 17 11 10 19 19 C 1.48939 * 107.56298 * 295.11047 * 14 13 12 20 20 H 0.96999 * 120.00229 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.46905 * 59.99476 * 9 7 2 22 22 H 1.09004 * 109.46921 * 300.00071 * 9 7 2 23 23 H 1.08998 * 109.46948 * 59.99797 * 10 9 7 24 24 H 1.08996 * 109.47177 * 300.00247 * 10 9 7 25 25 H 1.08997 * 109.18095 * 61.32676 * 12 11 10 26 26 H 1.08994 * 108.87765 * 302.19207 * 12 11 10 27 27 H 1.09005 * 109.56185 * 294.43324 * 13 12 11 28 28 H 1.08989 * 109.56691 * 174.08505 * 13 12 11 29 29 H 1.09000 * 110.03813 * 32.92912 * 15 14 13 30 30 H 1.09004 * 110.03624 * 154.37063 * 15 14 13 31 31 H 1.08994 * 110.38321 * 117.15477 * 16 15 14 32 32 H 1.09010 * 110.38378 * 239.51258 * 16 15 14 33 33 H 1.08995 * 110.97819 * 189.96109 * 19 14 13 34 34 H 1.08998 * 110.97928 * 313.74152 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5109 -4.9343 -0.0001 12 6 0.4177 -4.9539 1.0032 13 6 -0.2955 -6.3078 1.0069 14 7 0.7076 -7.3773 1.2021 15 6 1.5793 -7.0003 2.3419 16 6 2.7036 -6.1203 1.7630 17 6 2.4231 -6.0728 0.2396 18 1 3.3305 -6.0258 -0.3625 19 6 1.6054 -7.3737 0.0138 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 2.8720 -3.6042 0.8905 24 1 2.8720 -3.6043 -0.8894 25 1 -0.3001 -4.1686 0.7662 26 1 0.8411 -4.7664 1.9899 27 1 -0.8049 -6.4546 0.0545 28 1 -1.0216 -6.3357 1.8192 29 1 1.0070 -6.4379 3.0797 30 1 2.0029 -7.8943 2.7997 31 1 2.6584 -5.1179 2.1887 32 1 3.6768 -6.5720 1.9558 33 1 2.2559 -8.2482 0.0135 34 1 1.0298 -7.3172 -0.9101 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307273479.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:22 Heat of formation + Delta-G solvation = -2.933626 kcal Electronic energy + Delta-G solvation = -14524.960499 eV Core-core repulsion = 12263.831841 eV Total energy + Delta-G solvation = -2261.128659 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.87173 -36.76762 -34.77652 -32.85475 -31.36159 -30.08842 -27.68246 -25.50175 -24.70056 -22.11266 -21.68504 -20.25229 -18.70576 -17.44517 -16.90736 -16.53831 -15.62943 -15.53397 -15.43080 -14.74336 -14.10933 -13.93303 -13.71162 -13.40581 -13.15084 -12.84386 -12.58081 -12.56706 -12.26453 -12.24908 -11.90760 -11.80506 -11.68403 -11.28134 -11.26958 -10.59000 -9.65789 -9.12978 -8.24092 -6.36210 1.37396 1.40609 1.48699 2.36838 2.82892 3.09000 3.12152 3.72839 3.89289 3.99444 4.09750 4.19400 4.26556 4.38833 4.44657 4.57012 4.61705 4.71274 4.87507 4.88516 4.90857 4.99013 5.00759 5.05193 5.16209 5.39180 5.58506 5.70970 5.77877 5.87403 6.01676 6.19937 6.27332 6.80025 7.33206 8.87668 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.060975 B = 0.007212 C = 0.006926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.092334 B = 3881.537019 C = 4041.621560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.549 4.549 8 H 0.059 0.941 9 C 0.035 3.965 10 C 0.081 3.919 11 N -0.541 5.541 12 C 0.022 3.978 13 C 0.043 3.957 14 N -0.497 5.497 15 C 0.030 3.970 16 C -0.180 4.180 17 C 0.036 3.964 18 H 0.107 0.893 19 C 0.041 3.959 20 H 0.265 0.735 21 H -0.009 1.009 22 H -0.005 1.005 23 H 0.019 0.981 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.031 0.969 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.043 -13.717 2.995 14.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.587 4.587 8 H 0.077 0.923 9 C -0.003 4.003 10 C -0.046 4.046 11 N -0.265 5.265 12 C -0.107 4.107 13 C -0.086 4.086 14 N -0.218 5.218 15 C -0.099 4.099 16 C -0.220 4.220 17 C -0.073 4.073 18 H 0.125 0.875 19 C -0.087 4.087 20 H 0.073 0.927 21 H 0.009 0.991 22 H 0.013 0.987 23 H 0.037 0.963 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.049 0.951 27 H 0.100 0.900 28 H 0.111 0.889 29 H 0.083 0.917 30 H 0.118 0.882 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.127 0.873 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.354 -14.227 2.627 14.851 hybrid contribution 0.869 2.317 0.648 2.558 sum 4.224 -11.911 3.275 13.055 Atomic orbital electron populations 1.70092 1.07818 1.27946 1.51161 1.25968 0.95776 1.03355 0.94465 0.85479 0.78285 0.77944 0.79210 1.19076 1.20637 1.19197 1.21590 0.93499 0.92326 1.51325 0.92270 1.18972 0.94193 0.92193 0.94904 1.21951 0.95691 0.88173 0.98817 1.62906 1.11803 1.03114 1.48704 1.22943 0.94544 0.99659 0.93513 1.22667 0.95203 0.87469 1.03245 1.66830 1.11655 1.39366 1.03952 1.23134 0.93145 0.99143 0.94441 1.23457 1.01277 1.00067 0.97178 1.23900 0.96309 0.92381 0.94744 0.87456 1.23634 0.95136 0.95784 0.94176 0.92664 0.99104 0.98669 0.96252 0.91832 0.92495 0.95091 0.90042 0.88924 0.91677 0.88229 0.93420 0.89151 0.87307 0.89895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.26 13.29 21.45 0.28 -56.98 16 2 C 0.00 0.15 5.46 84.65 0.46 0.61 16 3 Si 0.97 44.58 29.54 68.60 2.03 46.61 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.55 -31.87 9.11 25.60 0.23 -31.64 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.03 1.89 4.31 29.84 0.13 2.01 16 10 C 0.08 3.53 5.08 86.30 0.44 3.97 16 11 N -0.54 -19.96 4.84 -856.01 -4.14 -24.10 16 12 C 0.02 0.81 4.29 86.02 0.37 1.18 16 13 C 0.04 1.23 5.96 86.12 0.51 1.74 16 14 N -0.50 -12.70 6.16 -876.90 -5.40 -18.10 16 15 C 0.03 0.71 6.21 86.38 0.54 1.24 16 16 C -0.18 -4.69 5.73 31.63 0.18 -4.51 16 17 C 0.04 1.03 3.86 46.20 0.18 1.21 16 18 H 0.11 2.83 8.13 -2.39 -0.02 2.81 16 19 C 0.04 1.00 6.54 86.70 0.57 1.56 16 20 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 21 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 22 H 0.00 -0.29 6.45 -2.38 -0.02 -0.30 16 23 H 0.02 0.84 6.80 -2.39 -0.02 0.82 16 24 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 25 H 0.06 2.41 6.43 -2.39 -0.02 2.39 16 26 H 0.03 1.14 5.24 -2.39 -0.01 1.13 16 27 H 0.08 2.32 7.91 -2.38 -0.02 2.30 16 28 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.06 1.62 7.07 -2.39 -0.02 1.60 16 30 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 31 H 0.05 1.51 5.62 -2.39 -0.01 1.50 16 32 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.08 2.11 7.86 -2.39 -0.02 2.09 16 Total: -1.00 -64.23 258.09 -2.55 -66.79 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: 1.06 Total: 8.40 kcal Atomic # 6 Polarization: -26.22 SS G_CDS: 3.61 Total: -22.61 kcal Atomic # 7 Polarization: -89.93 SS G_CDS: -9.25 Total: -99.18 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -64.23 -2.55 -66.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307273479.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.852 kcal (2) G-P(sol) polarization free energy of solvation -64.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds