Wall clock time and date at job start Mon Mar 30 2020 03:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 C 1.50706 * 109.47103 * 240.00064 * 2 1 3 5 5 H 1.07999 * 119.99515 * 240.00498 * 4 2 1 6 6 C 1.37870 * 120.00176 * 59.99965 * 4 2 1 7 7 N 1.31520 * 119.99883 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00043 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47288 * 59.99994 * 8 6 4 10 10 H 1.48503 * 109.47086 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.46819 * 299.99648 * 8 6 4 12 12 N 1.46893 * 109.47387 * 119.99848 * 2 1 3 13 13 C 1.48461 * 111.00593 * 177.33455 * 12 2 1 14 14 C 1.54906 * 103.21770 * 159.94191 * 13 12 2 15 15 C 1.54417 * 102.98790 * 322.21465 * 14 13 12 16 16 H 1.08997 * 112.70184 * 259.78643 * 15 14 13 17 17 C 1.54230 * 108.98232 * 134.45189 * 15 14 13 18 18 N 1.48562 * 104.54882 * 223.14993 * 17 15 14 19 19 C 1.48494 * 104.21021 * 39.99334 * 18 17 15 20 20 C 1.47892 * 111.00119 * 295.00011 * 12 2 1 21 21 H 1.08996 * 111.75816 * 337.85938 * 20 12 2 22 22 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 23 23 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 24 24 H 1.08992 * 109.47280 * 179.97438 * 1 2 3 25 25 H 0.97004 * 119.99507 * 180.02562 * 7 6 4 26 26 H 1.08998 * 110.67161 * 278.37700 * 13 12 2 27 27 H 1.09006 * 110.66440 * 41.51574 * 13 12 2 28 28 H 1.09003 * 110.71585 * 203.83620 * 14 13 12 29 29 H 1.09001 * 110.86168 * 80.65820 * 14 13 12 30 30 H 1.09002 * 110.41972 * 104.38209 * 17 15 14 31 31 H 1.09000 * 110.52079 * 341.96601 * 17 15 14 32 32 H 1.00905 * 110.99767 * 159.53986 * 18 17 15 33 33 H 1.09000 * 110.37084 * 201.82705 * 19 18 17 34 34 H 1.09001 * 110.36731 * 79.49773 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.8258 -2.5202 -4.0077 10 1 1.8259 -0.4207 -5.2205 11 1 3.8064 -1.1209 -4.0081 12 7 2.0197 -0.6924 1.1994 13 6 3.5023 -0.7683 1.2020 14 6 3.8414 -1.0224 2.6920 15 6 2.8049 -0.1534 3.4368 16 1 3.2203 0.7931 3.7826 17 6 2.1928 -0.9782 4.5874 18 7 0.7382 -0.6821 4.5261 19 6 0.4323 -0.6568 3.0732 20 6 1.6463 0.0442 2.4262 21 1 1.4445 1.0954 2.2207 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 0.7089 1.1613 -3.4845 26 1 3.8463 -1.5965 0.5824 27 1 3.9363 0.1727 0.8638 28 1 4.8553 -0.6923 2.9184 29 1 3.7148 -2.0751 2.9448 30 1 2.6056 -0.6602 5.5447 31 1 2.3711 -2.0422 4.4317 32 1 0.2035 -1.3973 4.9958 33 1 -0.4783 -0.0872 2.8871 34 1 0.3311 -1.6718 2.6891 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307406250.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:06 Heat of formation + Delta-G solvation = 11.156719 kcal Electronic energy + Delta-G solvation = -14712.729023 eV Core-core repulsion = 12452.211367 eV Total energy + Delta-G solvation = -2260.517655 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.47208 -35.49444 -33.30692 -31.46411 -28.52402 -27.98986 -26.02659 -24.91167 -21.30786 -20.97960 -20.12188 -18.65063 -16.57402 -15.82382 -15.59121 -14.50998 -14.14498 -13.70459 -13.47349 -12.75909 -12.48383 -12.21482 -12.01314 -11.41880 -11.28522 -11.06143 -10.80129 -10.66022 -10.54078 -10.25972 -10.25265 -10.06185 -9.95977 -9.74650 -8.88037 -8.42467 -8.32616 -7.30415 -6.00602 -4.05458 3.31727 3.36182 3.38902 4.39256 4.55408 4.87363 4.93905 5.21707 5.27940 5.36257 5.64580 5.73685 5.82432 5.87979 5.99377 6.14893 6.24578 6.37124 6.45083 6.49798 6.65050 6.72935 6.83002 6.94816 7.09526 7.15826 7.51237 7.52396 7.67664 7.83425 8.15664 8.33838 8.57471 9.00739 9.59653 11.06188 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.050655 B = 0.009193 C = 0.008260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.621162 B = 3045.111324 C = 3389.007723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.204 3.796 3 H -0.001 1.001 4 C -0.504 4.504 5 H 0.060 0.940 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.508 5.508 13 C 0.054 3.946 14 C -0.122 4.122 15 C -0.102 4.102 16 H 0.081 0.919 17 C 0.046 3.954 18 N -0.673 5.673 19 C 0.052 3.948 20 C 0.065 3.935 21 H 0.060 0.940 22 H 0.008 0.992 23 H 0.083 0.917 24 H 0.032 0.968 25 H 0.261 0.739 26 H 0.077 0.923 27 H 0.038 0.962 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.041 0.959 32 H 0.330 0.670 33 H 0.073 0.927 34 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.466 -2.752 10.357 10.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.097 3.903 3 H 0.017 0.983 4 C -0.542 4.542 5 H 0.079 0.921 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.204 1.204 12 N -0.233 5.233 13 C -0.074 4.074 14 C -0.160 4.160 15 C -0.122 4.122 16 H 0.099 0.901 17 C -0.083 4.083 18 N -0.301 5.301 19 C -0.077 4.077 20 C -0.045 4.045 21 H 0.078 0.922 22 H 0.027 0.973 23 H 0.102 0.898 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.144 0.856 33 H 0.091 0.909 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.156 -2.408 10.303 10.798 hybrid contribution 0.620 -0.537 -1.220 1.470 sum 2.777 -2.944 9.083 9.944 Atomic orbital electron populations 1.21798 0.97605 0.99481 0.99904 1.19412 0.92606 0.91989 0.86249 0.98319 1.21086 1.31068 1.12273 0.89814 0.92147 1.24934 0.95215 0.95074 0.99008 1.69890 1.36872 1.22980 1.23489 0.86588 0.79051 0.79758 0.82157 1.20267 1.21345 1.20376 1.64906 1.08457 1.47907 1.02078 1.22944 0.89835 1.00592 0.94010 1.22669 0.97529 0.99358 0.96453 1.22695 0.96022 0.98363 0.95070 0.90080 1.22960 0.89384 0.97587 0.98415 1.63754 1.04294 1.49771 1.12279 1.22973 0.98102 1.00360 0.86283 1.23028 0.93660 0.96483 0.91292 0.92199 0.97256 0.89803 0.94882 0.92940 0.90475 0.94338 0.92000 0.91358 0.91139 0.94023 0.85619 0.90867 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 8.57 37.16 0.32 -2.88 16 2 C 0.20 5.20 1.76 -68.87 -0.12 5.07 16 3 H 0.00 -0.02 8.02 -51.93 -0.42 -0.44 16 4 C -0.50 -13.85 8.06 -34.44 -0.28 -14.13 16 5 H 0.06 1.66 6.79 -52.49 -0.36 1.30 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -25.63 11.32 55.43 0.63 -25.00 16 8 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.51 -11.01 4.56 -214.65 -0.98 -11.99 16 13 C 0.05 1.07 5.68 -1.95 -0.01 1.06 16 14 C -0.12 -1.89 6.60 -24.98 -0.16 -2.05 16 15 C -0.10 -1.61 4.02 -88.17 -0.35 -1.96 16 16 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 17 C 0.05 0.64 7.00 -2.26 -0.02 0.62 16 18 N -0.67 -9.86 7.62 -109.79 -0.84 -10.70 16 19 C 0.05 0.90 6.22 -2.21 -0.01 0.88 16 20 C 0.07 1.24 2.77 -65.38 -0.18 1.06 16 21 H 0.06 1.23 7.65 -51.93 -0.40 0.84 16 22 H 0.01 0.19 6.09 -51.93 -0.32 -0.12 16 23 H 0.08 2.27 6.07 -51.93 -0.32 1.95 16 24 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 26 H 0.08 1.56 7.30 -51.93 -0.38 1.18 16 27 H 0.04 0.80 8.02 -51.93 -0.42 0.38 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 1.02 7.19 -51.93 -0.37 0.65 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.04 0.56 7.19 -51.93 -0.37 0.19 16 32 H 0.33 4.09 8.92 -39.29 -0.35 3.74 16 33 H 0.07 1.28 7.32 -51.93 -0.38 0.90 16 34 H 0.05 0.99 7.96 -51.93 -0.41 0.58 16 LS Contribution 259.77 15.07 3.91 3.91 Total: -1.00 -28.43 259.77 -8.52 -36.96 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -5.31 Total: 1.21 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -0.92 Total: -10.80 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: -1.19 Total: -47.68 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -28.43 -8.52 -36.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307406250.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.115 kcal (2) G-P(sol) polarization free energy of solvation -28.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds