Wall clock time and date at job start Mon Mar 30 2020 03:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 C 1.50706 * 109.47103 * 240.00064 * 2 1 3 5 5 H 1.07999 * 119.99515 * 240.00498 * 4 2 1 6 6 C 1.37870 * 120.00176 * 59.99965 * 4 2 1 7 7 N 1.31520 * 119.99883 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00043 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47288 * 59.99994 * 8 6 4 10 10 H 1.48503 * 109.47086 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.46819 * 299.99648 * 8 6 4 12 12 N 1.46893 * 109.47387 * 119.99848 * 2 1 3 13 13 C 1.48461 * 111.00593 * 177.33455 * 12 2 1 14 14 C 1.54906 * 103.21770 * 159.94191 * 13 12 2 15 15 C 1.54417 * 102.98790 * 322.21465 * 14 13 12 16 16 H 1.08997 * 112.70184 * 259.78643 * 15 14 13 17 17 C 1.54230 * 108.98232 * 134.45189 * 15 14 13 18 18 N 1.48562 * 104.54882 * 223.14993 * 17 15 14 19 19 C 1.48494 * 104.21021 * 39.99334 * 18 17 15 20 20 C 1.47892 * 111.00119 * 295.00011 * 12 2 1 21 21 H 1.08996 * 111.75816 * 337.85938 * 20 12 2 22 22 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 23 23 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 24 24 H 1.08992 * 109.47280 * 179.97438 * 1 2 3 25 25 H 0.97004 * 119.99507 * 180.02562 * 7 6 4 26 26 H 1.08998 * 110.67161 * 278.37700 * 13 12 2 27 27 H 1.09006 * 110.66440 * 41.51574 * 13 12 2 28 28 H 1.09003 * 110.71585 * 203.83620 * 14 13 12 29 29 H 1.09001 * 110.86168 * 80.65820 * 14 13 12 30 30 H 1.09002 * 110.41972 * 104.38209 * 17 15 14 31 31 H 1.09000 * 110.52079 * 341.96601 * 17 15 14 32 32 H 1.00905 * 110.99767 * 159.53986 * 18 17 15 33 33 H 1.09000 * 110.37084 * 201.82705 * 19 18 17 34 34 H 1.09001 * 110.36731 * 79.49773 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.8258 -2.5202 -4.0077 10 1 1.8259 -0.4207 -5.2205 11 1 3.8064 -1.1209 -4.0081 12 7 2.0197 -0.6924 1.1994 13 6 3.5023 -0.7683 1.2020 14 6 3.8414 -1.0224 2.6920 15 6 2.8049 -0.1534 3.4368 16 1 3.2203 0.7931 3.7826 17 6 2.1928 -0.9782 4.5874 18 7 0.7382 -0.6821 4.5261 19 6 0.4323 -0.6568 3.0732 20 6 1.6463 0.0442 2.4262 21 1 1.4445 1.0954 2.2207 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 0.7089 1.1613 -3.4845 26 1 3.8463 -1.5965 0.5824 27 1 3.9363 0.1727 0.8638 28 1 4.8553 -0.6923 2.9184 29 1 3.7148 -2.0751 2.9448 30 1 2.6056 -0.6602 5.5447 31 1 2.3711 -2.0422 4.4317 32 1 0.2035 -1.3973 4.9958 33 1 -0.4783 -0.0872 2.8871 34 1 0.3311 -1.6718 2.6891 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307406250.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:06 Heat of formation + Delta-G solvation = -9.731795 kcal Electronic energy + Delta-G solvation = -14713.634817 eV Core-core repulsion = 12452.211367 eV Total energy + Delta-G solvation = -2261.423449 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.92193 -37.11124 -35.07419 -33.23042 -30.20604 -29.48685 -27.50840 -26.96581 -22.74553 -22.50882 -21.80722 -20.16708 -18.41428 -17.52401 -17.08040 -16.29175 -15.57552 -15.35064 -15.01586 -14.54779 -13.99659 -13.84434 -13.51808 -13.06285 -12.89786 -12.80574 -12.65642 -12.36514 -12.19162 -11.97145 -11.82335 -11.64851 -11.56411 -11.45231 -10.92121 -10.54486 -9.51809 -9.09792 -8.13380 -6.26011 1.40370 1.42402 1.50032 2.40218 3.13794 3.23277 3.49278 3.60169 3.91271 3.95074 4.30976 4.40388 4.48636 4.56919 4.71207 4.76445 4.86695 4.93825 4.97564 4.99650 5.04620 5.11500 5.14344 5.25436 5.36888 5.45720 5.64154 5.70029 5.81821 6.20453 6.33009 6.47960 6.65715 6.88201 7.43483 8.92666 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.050655 B = 0.009193 C = 0.008260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.621162 B = 3045.111324 C = 3389.007723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.210 3.790 3 H -0.041 1.041 4 C -0.520 4.520 5 H 0.057 0.943 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.961 3.039 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.271 1.271 12 N -0.513 5.513 13 C 0.047 3.953 14 C -0.106 4.106 15 C -0.099 4.099 16 H 0.091 0.909 17 C 0.051 3.949 18 N -0.671 5.671 19 C 0.061 3.939 20 C 0.055 3.945 21 H 0.035 0.965 22 H 0.026 0.974 23 H 0.057 0.943 24 H 0.030 0.970 25 H 0.262 0.738 26 H 0.067 0.933 27 H 0.019 0.981 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.051 0.949 32 H 0.346 0.654 33 H 0.065 0.935 34 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.310 -3.953 11.761 12.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.102 3.898 3 H -0.024 1.024 4 C -0.558 4.558 5 H 0.075 0.925 6 C -0.189 4.189 7 N -0.561 5.561 8 Si 0.787 3.213 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.237 5.237 13 C -0.081 4.081 14 C -0.144 4.144 15 C -0.119 4.119 16 H 0.109 0.891 17 C -0.078 4.078 18 N -0.301 5.301 19 C -0.069 4.069 20 C -0.055 4.055 21 H 0.053 0.947 22 H 0.045 0.955 23 H 0.076 0.924 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.037 0.963 28 H 0.108 0.892 29 H 0.099 0.901 30 H 0.115 0.885 31 H 0.069 0.931 32 H 0.162 0.838 33 H 0.084 0.916 34 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.003 -3.623 11.736 12.644 hybrid contribution 0.358 -0.127 -1.619 1.663 sum 3.361 -3.750 10.117 11.301 Atomic orbital electron populations 1.21584 0.97252 0.99003 0.99452 1.19189 0.92860 0.89960 0.87777 1.02368 1.21358 1.31213 1.12301 0.90965 0.92469 1.25751 0.95346 0.95763 1.02023 1.70027 1.37726 1.24182 1.24143 0.85560 0.78714 0.78669 0.78384 1.19651 1.20885 1.19629 1.64852 1.09809 1.47450 1.01635 1.23002 0.88584 0.99235 0.97256 1.22606 0.98947 1.00190 0.92643 1.22739 0.94838 0.99416 0.94891 0.89099 1.22998 0.88406 0.97732 0.98628 1.63715 1.05296 1.50827 1.10217 1.22747 0.96929 0.99225 0.87966 1.23122 0.96245 0.95014 0.91138 0.94675 0.95512 0.92381 0.95116 0.92904 0.91445 0.96293 0.89222 0.90073 0.88503 0.93095 0.83800 0.91625 0.93761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.83 8.57 71.98 0.62 -5.21 16 2 C 0.21 11.05 1.76 44.17 0.08 11.12 16 3 H -0.04 -2.45 8.02 -2.39 -0.02 -2.47 16 4 C -0.52 -29.21 8.06 25.60 0.21 -29.01 16 5 H 0.06 3.18 6.79 -2.91 -0.02 3.16 16 6 C 0.01 0.55 5.30 84.65 0.45 1.00 16 7 N -0.92 -54.11 11.32 21.45 0.24 -53.87 16 8 Si 0.96 44.21 29.54 68.60 2.03 46.23 16 9 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 12 N -0.51 -22.42 4.56 -833.01 -3.80 -26.22 16 13 C 0.05 1.85 5.68 86.65 0.49 2.35 16 14 C -0.11 -3.00 6.60 31.73 0.21 -2.79 16 15 C -0.10 -2.89 4.02 -9.21 -0.04 -2.93 16 16 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 17 C 0.05 1.23 7.00 86.40 0.61 1.83 16 18 N -0.67 -17.79 7.62 -501.26 -3.82 -21.61 16 19 C 0.06 2.04 6.22 86.47 0.54 2.58 16 20 C 0.05 2.05 2.77 45.88 0.13 2.17 16 21 H 0.04 1.49 7.65 -2.39 -0.02 1.47 16 22 H 0.03 1.21 6.09 -2.39 -0.01 1.19 16 23 H 0.06 3.24 6.07 -2.39 -0.01 3.23 16 24 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 26 H 0.07 2.73 7.30 -2.39 -0.02 2.71 16 27 H 0.02 0.80 8.02 -2.38 -0.02 0.78 16 28 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.08 2.13 7.19 -2.39 -0.02 2.11 16 30 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.05 1.15 7.19 -2.39 -0.02 1.14 16 32 H 0.35 7.49 8.92 -89.69 -0.80 6.69 16 33 H 0.07 2.26 7.32 -2.39 -0.02 2.24 16 34 H 0.04 1.56 7.96 -2.39 -0.02 1.54 16 Total: -1.00 -61.90 259.77 -1.79 -63.69 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.28 Total: 10.67 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: 3.29 Total: -18.89 kcal Atomic # 7 Polarization: -94.32 SS G_CDS: -7.38 Total: -101.70 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -61.90 -1.79 -63.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307406250.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.955 kcal (2) G-P(sol) polarization free energy of solvation -61.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds