Wall clock time and date at job start Mon Mar 30 2020 02:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00138 * 2 1 4 4 H 1.48508 * 109.46959 * 269.99941 * 3 2 1 5 5 H 1.48498 * 109.47168 * 29.99156 * 3 2 1 6 6 H 1.48495 * 109.47228 * 149.99815 * 3 2 1 7 7 C 1.37874 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00381 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99707 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.47108 * 179.97438 * 9 7 2 11 11 C 1.48749 * 110.99778 * 304.54143 * 10 9 7 12 12 C 1.54463 * 104.28169 * 199.19610 * 11 10 9 13 13 H 1.08999 * 111.89515 * 263.66169 * 12 11 10 14 14 C 1.54144 * 108.80085 * 139.54647 * 12 11 10 15 15 C 1.54841 * 104.34378 * 271.40875 * 14 12 11 16 16 C 1.54842 * 102.72929 * 321.77322 * 15 14 12 17 17 H 1.08997 * 110.46109 * 279.51286 * 16 15 14 18 18 N 1.46891 * 110.45821 * 156.93880 * 16 15 14 19 19 C 1.55261 * 104.75672 * 25.28831 * 12 11 10 20 20 H 1.09008 * 111.94911 * 238.43996 * 19 12 11 21 21 C 1.48749 * 110.99980 * 189.99359 * 10 9 7 22 22 H 0.97007 * 119.99673 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47524 * 59.99346 * 9 7 2 24 24 H 1.09006 * 109.46570 * 299.98940 * 9 7 2 25 25 H 1.09000 * 110.47001 * 317.89523 * 11 10 9 26 26 H 1.09002 * 110.46956 * 80.49596 * 11 10 9 27 27 H 1.09004 * 110.46222 * 30.12121 * 14 12 11 28 28 H 1.08995 * 110.46049 * 152.68940 * 14 12 11 29 29 H 1.08995 * 110.76482 * 80.08022 * 15 14 12 30 30 H 1.08996 * 110.76136 * 203.46858 * 15 14 12 31 31 H 1.00907 * 111.00080 * 61.45587 * 18 16 15 32 32 H 1.00901 * 111.00402 * 185.40852 * 18 16 15 33 33 H 1.09002 * 110.47176 * 279.50560 * 21 10 9 34 34 H 1.09001 * 110.46700 * 41.97602 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.6998 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 3.1505 -3.5092 -1.1434 12 6 3.7236 -4.9352 -1.2982 13 1 4.6809 -5.0460 -0.7889 14 6 3.8303 -5.2674 -2.7996 15 6 2.4529 -5.8784 -3.1561 16 6 2.1177 -6.7200 -1.9003 17 1 2.6406 -7.6759 -1.9316 18 7 0.6677 -6.9296 -1.7948 19 6 2.6342 -5.8663 -0.7009 20 1 3.0192 -6.4677 0.1227 21 6 1.5125 -4.9096 -0.2405 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5570 -0.8896 24 1 0.6241 -2.5566 0.8905 25 1 2.6213 -3.2107 -2.0484 26 1 3.9469 -2.8009 -0.9152 27 1 4.0063 -4.3609 -3.3789 28 1 4.6253 -5.9923 -2.9739 29 1 1.7098 -5.0952 -3.3058 30 1 2.5289 -6.5142 -4.0382 31 1 0.3167 -7.4375 -2.5930 32 1 0.4321 -7.4010 -0.9343 33 1 1.0544 -5.2738 0.6792 34 1 0.7607 -4.7995 -1.0221 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307433971.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:40 Heat of formation + Delta-G solvation = -1.691887 kcal Electronic energy + Delta-G solvation = -14478.921876 eV Core-core repulsion = 12217.847063 eV Total energy + Delta-G solvation = -2261.074813 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.55050 -35.26501 -32.89842 -32.21252 -29.26667 -27.88590 -26.02056 -24.28536 -22.74309 -20.13265 -19.68323 -18.63255 -16.32140 -15.91041 -15.23496 -14.88993 -14.72354 -13.98385 -13.87112 -13.24106 -12.44499 -12.05637 -11.85280 -11.56033 -11.26713 -11.04021 -10.81941 -10.77864 -10.53966 -10.47369 -10.20069 -10.08588 -9.95014 -9.67308 -9.00457 -8.53571 -8.38127 -7.18828 -5.96983 -3.98125 3.34819 3.40727 3.45343 4.47259 4.55440 4.67893 4.82894 5.17338 5.37982 5.45480 5.51686 5.59525 5.61986 5.75800 5.85597 5.99593 6.05006 6.19024 6.29117 6.35885 6.49278 6.67204 6.80928 6.82873 6.90128 7.25820 7.35598 7.48878 7.54338 7.83093 8.08762 8.32026 8.61805 9.10005 9.65887 11.14351 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.047698 B = 0.008168 C = 0.007615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.890305 B = 3427.076043 C = 3675.912142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.896 3.104 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.510 4.510 8 H 0.062 0.938 9 C 0.183 3.817 10 N -0.514 5.514 11 C 0.056 3.944 12 C -0.096 4.096 13 H 0.076 0.924 14 C -0.117 4.117 15 C -0.116 4.116 16 C 0.090 3.910 17 H 0.033 0.967 18 N -0.838 5.838 19 C -0.088 4.088 20 H 0.074 0.926 21 C 0.042 3.958 22 H 0.260 0.740 23 H -0.007 1.007 24 H 0.030 0.970 25 H 0.039 0.961 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.335 0.665 32 H 0.340 0.660 33 H 0.058 0.942 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.826 -13.108 -5.100 14.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.724 3.276 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.549 4.549 8 H 0.080 0.920 9 C 0.057 3.943 10 N -0.238 5.238 11 C -0.072 4.072 12 C -0.116 4.116 13 H 0.094 0.906 14 C -0.155 4.155 15 C -0.154 4.154 16 C -0.022 4.022 17 H 0.051 0.949 18 N -0.368 5.368 19 C -0.107 4.107 20 H 0.093 0.907 21 C -0.086 4.086 22 H 0.070 0.930 23 H 0.010 0.990 24 H 0.048 0.952 25 H 0.057 0.943 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.148 0.852 32 H 0.153 0.847 33 H 0.077 0.923 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.873 -12.147 -4.568 13.862 hybrid contribution 0.135 -0.050 -0.723 0.737 sum 5.008 -12.197 -5.291 14.207 Atomic orbital electron populations 1.69972 1.06031 1.26627 1.51056 1.24996 0.94856 0.99266 0.95493 0.86530 0.79839 0.83267 0.77978 1.20785 1.21241 1.19815 1.21218 0.93384 0.90223 1.50050 0.92023 1.19837 0.90627 0.87710 0.96149 1.65765 1.16668 1.02383 1.38960 1.22976 0.96708 0.93936 0.93581 1.22612 0.98130 0.96377 0.94469 0.90601 1.22339 0.96498 1.00402 0.96310 1.22484 0.97675 0.99333 0.95944 1.22502 0.87530 0.96265 0.95910 0.94873 1.58716 1.13208 1.57705 1.07126 1.22914 0.96067 0.96081 0.95672 0.90739 1.23048 0.95368 0.90631 0.99595 0.93000 0.98956 0.95192 0.94267 0.91013 0.91273 0.92257 0.90358 0.92387 0.85236 0.84725 0.92314 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -14.86 8.59 -34.44 -0.30 -15.15 16 8 H 0.06 1.77 6.65 -52.49 -0.35 1.42 16 9 C 0.18 5.04 4.83 -4.97 -0.02 5.01 16 10 N -0.51 -11.85 5.51 -230.96 -1.27 -13.12 16 11 C 0.06 1.16 4.91 -2.03 -0.01 1.15 16 12 C -0.10 -1.55 3.91 -88.06 -0.34 -1.89 16 13 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 14 C -0.12 -1.58 6.09 -25.16 -0.15 -1.74 16 15 C -0.12 -1.55 6.51 -24.79 -0.16 -1.71 16 16 C 0.09 1.16 3.72 -65.13 -0.24 0.92 16 17 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 18 N -0.84 -10.22 7.53 -2.49 -0.02 -10.24 16 19 C -0.09 -1.37 4.01 -87.04 -0.35 -1.72 16 20 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 21 C 0.04 0.81 5.36 -2.03 -0.01 0.80 16 22 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 23 H -0.01 -0.22 7.90 -51.93 -0.41 -0.63 16 24 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.04 0.86 7.55 -51.93 -0.39 0.46 16 26 H 0.07 1.53 7.17 -51.93 -0.37 1.16 16 27 H 0.07 0.95 7.77 -51.93 -0.40 0.54 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.34 3.38 9.07 -39.29 -0.36 3.03 16 32 H 0.34 3.73 9.04 -39.29 -0.36 3.37 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.06 1.29 6.59 -51.93 -0.34 0.95 16 LS Contribution 265.74 15.07 4.00 4.00 Total: -1.00 -30.97 265.74 -8.76 -39.73 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -5.50 Total: 2.03 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -1.69 Total: -12.81 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: -0.55 Total: -50.08 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.97 -8.76 -39.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307433971.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.038 kcal (2) G-P(sol) polarization free energy of solvation -30.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds