Wall clock time and date at job start Mon Mar 30 2020 02:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00138 * 2 1 4 4 H 1.48508 * 109.46959 * 269.99941 * 3 2 1 5 5 H 1.48498 * 109.47168 * 29.99156 * 3 2 1 6 6 H 1.48495 * 109.47228 * 149.99815 * 3 2 1 7 7 C 1.37874 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00381 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99707 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.47108 * 179.97438 * 9 7 2 11 11 C 1.48749 * 110.99778 * 304.54143 * 10 9 7 12 12 C 1.54463 * 104.28169 * 199.19610 * 11 10 9 13 13 H 1.08999 * 111.89515 * 263.66169 * 12 11 10 14 14 C 1.54144 * 108.80085 * 139.54647 * 12 11 10 15 15 C 1.54841 * 104.34378 * 271.40875 * 14 12 11 16 16 C 1.54842 * 102.72929 * 321.77322 * 15 14 12 17 17 H 1.08997 * 110.46109 * 279.51286 * 16 15 14 18 18 N 1.46891 * 110.45821 * 156.93880 * 16 15 14 19 19 C 1.55261 * 104.75672 * 25.28831 * 12 11 10 20 20 H 1.09008 * 111.94911 * 238.43996 * 19 12 11 21 21 C 1.48749 * 110.99980 * 189.99359 * 10 9 7 22 22 H 0.97007 * 119.99673 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47524 * 59.99346 * 9 7 2 24 24 H 1.09006 * 109.46570 * 299.98940 * 9 7 2 25 25 H 1.09000 * 110.47001 * 317.89523 * 11 10 9 26 26 H 1.09002 * 110.46956 * 80.49596 * 11 10 9 27 27 H 1.09004 * 110.46222 * 30.12121 * 14 12 11 28 28 H 1.08995 * 110.46049 * 152.68940 * 14 12 11 29 29 H 1.08995 * 110.76482 * 80.08022 * 15 14 12 30 30 H 1.08996 * 110.76136 * 203.46858 * 15 14 12 31 31 H 1.00907 * 111.00080 * 61.45587 * 18 16 15 32 32 H 1.00901 * 111.00402 * 185.40852 * 18 16 15 33 33 H 1.09002 * 110.47176 * 279.50560 * 21 10 9 34 34 H 1.09001 * 110.46700 * 41.97602 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.6998 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 3.1505 -3.5092 -1.1434 12 6 3.7236 -4.9352 -1.2982 13 1 4.6809 -5.0460 -0.7889 14 6 3.8303 -5.2674 -2.7996 15 6 2.4529 -5.8784 -3.1561 16 6 2.1177 -6.7200 -1.9003 17 1 2.6406 -7.6759 -1.9316 18 7 0.6677 -6.9296 -1.7948 19 6 2.6342 -5.8663 -0.7009 20 1 3.0192 -6.4677 0.1227 21 6 1.5125 -4.9096 -0.2405 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5570 -0.8896 24 1 0.6241 -2.5566 0.8905 25 1 2.6213 -3.2107 -2.0484 26 1 3.9469 -2.8009 -0.9152 27 1 4.0063 -4.3609 -3.3789 28 1 4.6253 -5.9923 -2.9739 29 1 1.7098 -5.0952 -3.3058 30 1 2.5289 -6.5142 -4.0382 31 1 0.3167 -7.4375 -2.5930 32 1 0.4321 -7.4010 -0.9343 33 1 1.0544 -5.2738 0.6792 34 1 0.7607 -4.7995 -1.0221 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307433971.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:40 Heat of formation + Delta-G solvation = -25.207780 kcal Electronic energy + Delta-G solvation = -14479.941602 eV Core-core repulsion = 12217.847063 eV Total energy + Delta-G solvation = -2262.094538 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.92645 -36.87416 -34.73151 -33.68858 -30.92294 -29.26867 -27.93728 -25.56200 -24.65076 -21.93738 -20.90013 -19.95536 -18.36123 -17.34561 -16.82028 -16.24200 -15.98481 -15.59903 -15.43510 -14.96220 -14.24314 -13.61598 -13.50611 -13.29433 -12.89157 -12.64314 -12.53393 -12.38443 -12.15186 -11.86179 -11.62136 -11.54650 -11.38049 -11.28867 -11.14540 -10.65880 -9.50783 -9.07723 -8.23675 -6.34785 1.37811 1.40306 1.52053 2.38200 3.08772 3.36569 3.49273 3.64594 3.87285 4.05991 4.33233 4.39223 4.44935 4.48540 4.61679 4.65014 4.83672 4.93251 5.04899 5.08231 5.10122 5.13884 5.18975 5.31685 5.37396 5.42168 5.52264 5.62048 5.95007 6.25822 6.38779 6.54605 6.71083 6.82124 7.35377 8.88601 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.047698 B = 0.008168 C = 0.007615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.890305 B = 3427.076043 C = 3675.912142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.973 3.027 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.530 4.530 8 H 0.063 0.937 9 C 0.200 3.800 10 N -0.526 5.526 11 C 0.056 3.944 12 C -0.090 4.090 13 H 0.092 0.908 14 C -0.111 4.111 15 C -0.116 4.116 16 C 0.099 3.901 17 H 0.064 0.936 18 N -0.855 5.855 19 C -0.083 4.083 20 H 0.092 0.908 21 C 0.044 3.956 22 H 0.265 0.735 23 H -0.042 1.042 24 H -0.003 1.003 25 H 0.017 0.983 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.043 0.957 30 H 0.086 0.914 31 H 0.349 0.651 32 H 0.347 0.653 33 H 0.057 0.943 34 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.706 -14.260 -5.732 16.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.797 3.203 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.568 4.568 8 H 0.081 0.919 9 C 0.073 3.927 10 N -0.250 5.250 11 C -0.072 4.072 12 C -0.109 4.109 13 H 0.110 0.890 14 C -0.149 4.149 15 C -0.154 4.154 16 C -0.013 4.013 17 H 0.082 0.918 18 N -0.386 5.386 19 C -0.102 4.102 20 H 0.111 0.889 21 C -0.085 4.085 22 H 0.074 0.926 23 H -0.024 1.024 24 H 0.016 0.984 25 H 0.035 0.965 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.112 0.888 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.163 0.837 32 H 0.161 0.839 33 H 0.075 0.925 34 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.758 -13.329 -5.207 15.825 hybrid contribution -0.507 0.284 -0.511 0.773 sum 6.251 -13.045 -5.718 15.554 Atomic orbital electron populations 1.70111 1.07852 1.27970 1.51491 1.26003 0.95825 1.03467 0.94574 0.85333 0.78549 0.77908 0.78538 1.19633 1.20419 1.18794 1.21505 0.93554 0.91227 1.50562 0.91905 1.19452 0.90659 0.89637 0.92918 1.65665 1.16277 1.02466 1.40559 1.22981 0.95487 0.97208 0.91511 1.22618 0.98550 0.92827 0.96948 0.88953 1.22334 0.97648 1.01063 0.93880 1.22481 0.96610 0.98889 0.97462 1.22439 0.88133 0.96784 0.93946 0.91816 1.58634 1.13112 1.58657 1.08235 1.22949 0.94215 0.95675 0.97347 0.88939 1.23054 0.96464 0.89837 0.99107 0.92609 1.02404 0.98447 0.96490 0.92371 0.92014 0.88848 0.93835 0.89555 0.83694 0.83913 0.92454 0.93724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.75 13.29 21.45 0.28 -58.47 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 3 Si 0.97 45.82 29.54 68.60 2.03 47.85 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 7 C -0.53 -31.90 8.59 25.60 0.22 -31.68 16 8 H 0.06 3.68 6.65 -2.91 -0.02 3.66 16 9 C 0.20 11.68 4.83 85.56 0.41 12.09 16 10 N -0.53 -25.07 5.51 -884.63 -4.87 -29.94 16 11 C 0.06 2.36 4.91 86.44 0.42 2.79 16 12 C -0.09 -2.72 3.91 -9.13 -0.04 -2.76 16 13 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 14 C -0.11 -2.70 6.09 31.61 0.19 -2.50 16 15 C -0.12 -2.84 6.51 31.85 0.21 -2.63 16 16 C 0.10 2.27 3.72 46.59 0.17 2.45 16 17 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 18 N -0.85 -19.43 7.53 -161.79 -1.22 -20.65 16 19 C -0.08 -2.40 4.01 -8.48 -0.03 -2.44 16 20 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 21 C 0.04 1.71 5.36 86.44 0.46 2.17 16 22 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 23 H -0.04 -2.65 7.90 -2.39 -0.02 -2.67 16 24 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 25 H 0.02 0.77 7.55 -2.39 -0.02 0.75 16 26 H 0.06 2.54 7.17 -2.39 -0.02 2.52 16 27 H 0.06 1.60 7.77 -2.38 -0.02 1.58 16 28 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.04 1.36 8.14 -2.39 -0.02 1.35 16 30 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.35 6.32 9.07 -89.69 -0.81 5.50 16 32 H 0.35 7.01 9.04 -89.69 -0.81 6.20 16 33 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.04 1.92 6.59 -2.39 -0.02 1.91 16 Total: -1.00 -69.31 265.74 -1.83 -71.13 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -0.54 Total: 12.15 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: 2.49 Total: -22.08 kcal Atomic # 7 Polarization: -103.25 SS G_CDS: -5.80 Total: -109.06 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -69.31 -1.83 -71.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307433971.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.927 kcal (2) G-P(sol) polarization free energy of solvation -69.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds