Wall clock time and date at job start Mon Mar 30 2020 02:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 N 1.46893 * 109.47161 * 179.97438 * 9 7 2 11 11 C 1.50034 * 111.00048 * 289.77900 * 10 9 7 12 12 C 1.51528 * 102.46176 * 212.65914 * 11 10 9 13 13 H 1.08998 * 111.54182 * 287.99082 * 12 11 10 14 14 C 1.51870 * 122.22939 * 151.21556 * 12 11 10 15 15 C 1.56327 * 100.96877 * 206.86752 * 14 12 11 16 16 C 1.55997 * 105.77729 * 26.26632 * 15 14 12 17 17 H 1.08997 * 110.52735 * 125.56088 * 16 15 14 18 18 N 1.46895 * 110.64561 * 248.25309 * 16 15 14 19 19 C 1.49725 * 103.99012 * 6.93819 * 16 15 14 20 20 H 1.08999 * 108.54666 * 76.85401 * 19 16 15 21 21 C 1.49691 * 111.00143 * 170.00050 * 10 9 7 22 22 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 24 24 H 1.09000 * 109.47083 * 59.99509 * 9 7 2 25 25 H 1.09004 * 110.81109 * 330.89923 * 11 10 9 26 26 H 1.09007 * 110.81138 * 94.41632 * 11 10 9 27 27 H 1.09001 * 110.63183 * 89.33615 * 14 12 11 28 28 H 1.08998 * 112.08994 * 325.02512 * 14 12 11 29 29 H 1.09004 * 110.19449 * 267.18630 * 15 14 12 30 30 H 1.09002 * 110.18977 * 145.34587 * 15 14 12 31 31 H 1.00902 * 111.00000 * 294.63904 * 18 16 15 32 32 H 1.00897 * 111.00064 * 58.59333 * 18 16 15 33 33 H 1.08999 * 110.40558 * 234.10225 * 21 10 9 34 34 H 1.08997 * 110.40356 * 356.52476 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0013 -2.5789 -0.0001 11 6 3.7332 -3.2441 1.3177 12 6 4.9132 -4.1847 1.4553 13 1 4.8375 -5.0254 0.7657 14 6 5.4640 -4.6006 2.8082 15 6 6.9522 -4.9084 2.4416 16 6 7.2692 -4.0364 1.1875 17 1 8.1497 -3.4188 1.3642 18 7 7.4651 -4.8836 0.0036 19 6 6.0517 -3.1803 1.0248 20 1 6.0866 -2.3832 1.7674 21 6 5.4778 -2.6259 -0.2422 22 1 -0.4850 0.8400 -0.0004 23 1 3.8752 -0.6796 -0.8894 24 1 3.8746 -0.6807 0.8905 25 1 3.7245 -2.5129 2.1260 26 1 2.7962 -3.8004 1.2872 27 1 4.9584 -5.4959 3.1699 28 1 5.4013 -3.7963 3.5411 29 1 7.0703 -5.9657 2.2041 30 1 7.6079 -4.6323 3.2673 31 1 8.2842 -5.4639 0.1057 32 1 6.6460 -5.4434 -0.1799 33 1 5.7045 -3.2832 -1.0815 34 1 5.8644 -1.6239 -0.4278 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307433974.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:49 Heat of formation + Delta-G solvation = 16.645476 kcal Electronic energy + Delta-G solvation = -14407.929425 eV Core-core repulsion = 12147.649780 eV Total energy + Delta-G solvation = -2260.279645 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.26600 -35.85520 -32.75106 -32.07664 -29.68637 -28.45655 -26.20544 -24.99636 -22.34964 -20.10129 -19.95354 -19.07203 -17.02363 -16.28857 -15.22402 -14.68620 -14.56994 -14.07439 -13.60076 -13.26588 -13.09842 -12.35866 -12.30312 -12.25462 -11.53737 -11.37880 -11.02508 -10.94155 -10.76353 -10.63727 -10.41524 -9.96891 -9.73283 -9.67721 -9.19732 -8.68179 -8.54322 -7.33825 -6.01567 -3.98271 3.30076 3.37820 3.40824 4.19991 4.45197 4.58297 4.62791 4.89206 5.02004 5.23156 5.30867 5.34164 5.46613 5.60954 5.70108 5.79583 5.91829 5.98943 6.06163 6.12764 6.31400 6.45588 6.56424 6.63160 6.75722 6.81860 6.97799 7.15056 7.44168 7.61041 7.93287 7.97073 8.70102 9.08294 9.60752 11.11867 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.053451 B = 0.007869 C = 0.007513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.717434 B = 3557.296457 C = 3725.852048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.875 3.125 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.506 4.506 8 H 0.080 0.920 9 C 0.155 3.845 10 N -0.513 5.513 11 C 0.068 3.932 12 C -0.119 4.119 13 H 0.083 0.917 14 C -0.107 4.107 15 C -0.157 4.157 16 C 0.109 3.891 17 H 0.079 0.921 18 N -0.837 5.837 19 C -0.125 4.125 20 H 0.064 0.936 21 C 0.060 3.940 22 H 0.263 0.737 23 H 0.028 0.972 24 H -0.017 1.017 25 H 0.045 0.955 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.335 0.665 32 H 0.343 0.657 33 H 0.079 0.921 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.426 -8.717 4.621 17.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.702 3.298 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.544 4.544 8 H 0.098 0.902 9 C 0.028 3.972 10 N -0.237 5.237 11 C -0.060 4.060 12 C -0.138 4.138 13 H 0.102 0.898 14 C -0.145 4.145 15 C -0.197 4.197 16 C -0.003 4.003 17 H 0.097 0.903 18 N -0.366 5.366 19 C -0.145 4.145 20 H 0.082 0.918 21 C -0.067 4.067 22 H 0.073 0.927 23 H 0.046 0.954 24 H 0.000 1.000 25 H 0.063 0.937 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.147 0.853 32 H 0.157 0.843 33 H 0.097 0.903 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 14.056 -8.132 3.783 16.674 hybrid contribution 0.649 0.685 1.433 1.716 sum 14.706 -7.446 5.216 17.289 Atomic orbital electron populations 1.69897 1.06099 1.26744 1.51376 1.24908 0.94739 0.98813 0.94962 0.86867 0.80420 0.84107 0.78393 1.20444 1.21120 1.19180 1.21039 0.88779 0.94710 1.49884 0.90235 1.20384 0.97167 0.84757 0.94897 1.65144 1.09850 1.19387 1.29320 1.22323 0.96911 0.95432 0.91296 1.22722 0.96284 0.98155 0.96667 0.89827 1.21948 0.94660 1.01206 0.96726 1.23884 0.97076 0.99671 0.99084 1.21259 0.97456 0.93856 0.87750 0.90323 1.58850 1.08623 1.29760 1.39335 1.22067 0.94901 0.97625 0.99875 0.91759 1.21916 0.88910 0.99576 0.96344 0.92729 0.95393 0.99985 0.93658 0.90572 0.91800 0.91196 0.91923 0.91833 0.85302 0.84345 0.90309 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.13 13.96 55.43 0.77 -27.36 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 3 Si 0.87 22.01 27.47 -169.99 -4.67 17.34 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 7 C -0.51 -14.81 9.39 -34.44 -0.32 -15.13 16 8 H 0.08 2.53 8.04 -52.49 -0.42 2.11 16 9 C 0.15 3.91 3.50 -4.98 -0.02 3.89 16 10 N -0.51 -11.18 5.27 -233.75 -1.23 -12.41 16 11 C 0.07 1.31 5.92 -2.81 -0.02 1.29 16 12 C -0.12 -1.77 3.00 -89.31 -0.27 -2.03 16 13 H 0.08 1.23 7.15 -51.93 -0.37 0.85 16 14 C -0.11 -1.29 6.61 -25.52 -0.17 -1.46 16 15 C -0.16 -1.62 6.70 -23.34 -0.16 -1.77 16 16 C 0.11 1.28 4.01 -67.73 -0.27 1.01 16 17 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 18 N -0.84 -9.09 8.78 -4.69 -0.04 -9.13 16 19 C -0.12 -1.87 2.37 -91.23 -0.22 -2.08 16 20 H 0.06 1.02 7.97 -51.93 -0.41 0.61 16 21 C 0.06 1.09 6.62 -3.88 -0.03 1.06 16 22 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 23 H 0.03 0.72 7.05 -51.93 -0.37 0.35 16 24 H -0.02 -0.44 7.28 -51.93 -0.38 -0.82 16 25 H 0.05 0.92 7.70 -51.93 -0.40 0.52 16 26 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.58 7.99 -51.93 -0.41 0.16 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.33 2.87 9.08 -39.29 -0.36 2.51 16 32 H 0.34 3.75 7.83 -39.29 -0.31 3.44 16 33 H 0.08 1.39 7.76 -51.93 -0.40 0.98 16 34 H 0.05 0.91 7.58 -51.93 -0.39 0.51 16 LS Contribution 264.28 15.07 3.98 3.98 Total: -1.00 -30.88 264.28 -8.26 -39.13 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -5.51 Total: 1.78 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -1.56 Total: -13.34 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: -0.50 Total: -48.90 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.88 -8.26 -39.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307433974.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.780 kcal (2) G-P(sol) polarization free energy of solvation -30.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds