Wall clock time and date at job start Mon Mar 30 2020 02:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 N 1.46893 * 109.47161 * 179.97438 * 9 7 2 11 11 C 1.50034 * 111.00048 * 289.77900 * 10 9 7 12 12 C 1.51528 * 102.46176 * 212.65914 * 11 10 9 13 13 H 1.08998 * 111.54182 * 287.99082 * 12 11 10 14 14 C 1.51870 * 122.22939 * 151.21556 * 12 11 10 15 15 C 1.56327 * 100.96877 * 206.86752 * 14 12 11 16 16 C 1.55997 * 105.77729 * 26.26632 * 15 14 12 17 17 H 1.08997 * 110.52735 * 125.56088 * 16 15 14 18 18 N 1.46895 * 110.64561 * 248.25309 * 16 15 14 19 19 C 1.49725 * 103.99012 * 6.93819 * 16 15 14 20 20 H 1.08999 * 108.54666 * 76.85401 * 19 16 15 21 21 C 1.49691 * 111.00143 * 170.00050 * 10 9 7 22 22 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 24 24 H 1.09000 * 109.47083 * 59.99509 * 9 7 2 25 25 H 1.09004 * 110.81109 * 330.89923 * 11 10 9 26 26 H 1.09007 * 110.81138 * 94.41632 * 11 10 9 27 27 H 1.09001 * 110.63183 * 89.33615 * 14 12 11 28 28 H 1.08998 * 112.08994 * 325.02512 * 14 12 11 29 29 H 1.09004 * 110.19449 * 267.18630 * 15 14 12 30 30 H 1.09002 * 110.18977 * 145.34587 * 15 14 12 31 31 H 1.00902 * 111.00000 * 294.63904 * 18 16 15 32 32 H 1.00897 * 111.00064 * 58.59333 * 18 16 15 33 33 H 1.08999 * 110.40558 * 234.10225 * 21 10 9 34 34 H 1.08997 * 110.40356 * 356.52476 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0013 -2.5789 -0.0001 11 6 3.7332 -3.2441 1.3177 12 6 4.9132 -4.1847 1.4553 13 1 4.8375 -5.0254 0.7657 14 6 5.4640 -4.6006 2.8082 15 6 6.9522 -4.9084 2.4416 16 6 7.2692 -4.0364 1.1875 17 1 8.1497 -3.4188 1.3642 18 7 7.4651 -4.8836 0.0036 19 6 6.0517 -3.1803 1.0248 20 1 6.0866 -2.3832 1.7674 21 6 5.4778 -2.6259 -0.2422 22 1 -0.4850 0.8400 -0.0004 23 1 3.8752 -0.6796 -0.8894 24 1 3.8746 -0.6807 0.8905 25 1 3.7245 -2.5129 2.1260 26 1 2.7962 -3.8004 1.2872 27 1 4.9584 -5.4959 3.1699 28 1 5.4013 -3.7963 3.5411 29 1 7.0703 -5.9657 2.2041 30 1 7.6079 -4.6323 3.2673 31 1 8.2842 -5.4639 0.1057 32 1 6.6460 -5.4434 -0.1799 33 1 5.7045 -3.2832 -1.0815 34 1 5.8644 -1.6239 -0.4278 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307433974.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:49 Heat of formation + Delta-G solvation = -7.236335 kcal Electronic energy + Delta-G solvation = -14408.965018 eV Core-core repulsion = 12147.649780 eV Total energy + Delta-G solvation = -2261.315238 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.50646 -37.29219 -34.78823 -33.27750 -31.35472 -29.74443 -27.93080 -26.13787 -24.08417 -21.69734 -21.20356 -20.21097 -19.07694 -17.55389 -16.76534 -16.11181 -15.91482 -15.53742 -14.92385 -14.75844 -14.64267 -14.29084 -13.61600 -13.46849 -13.14270 -12.87908 -12.62131 -12.44164 -12.25140 -11.81780 -11.73930 -11.66305 -11.52066 -11.35875 -10.89208 -10.80646 -9.52225 -9.04854 -8.31464 -6.35140 1.30629 1.33241 1.44535 2.31561 2.99862 3.07185 3.18330 3.68101 3.83150 3.96817 4.18184 4.24043 4.35690 4.43609 4.57087 4.68196 4.71915 4.75373 4.86476 4.89545 4.91521 5.03356 5.08956 5.16899 5.29042 5.41064 5.46765 5.52479 5.95301 6.17189 6.32770 6.58270 6.70412 6.71878 7.28761 8.85502 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.053451 B = 0.007869 C = 0.007513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.717434 B = 3557.296457 C = 3725.852048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.252 1.252 7 C -0.518 4.518 8 H 0.034 0.966 9 C 0.168 3.832 10 N -0.537 5.537 11 C 0.066 3.934 12 C -0.109 4.109 13 H 0.089 0.911 14 C -0.106 4.106 15 C -0.144 4.144 16 C 0.115 3.885 17 H 0.088 0.912 18 N -0.843 5.843 19 C -0.118 4.118 20 H 0.054 0.946 21 C 0.062 3.938 22 H 0.268 0.732 23 H 0.026 0.974 24 H -0.016 1.016 25 H 0.031 0.969 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.351 0.649 32 H 0.343 0.657 33 H 0.085 0.915 34 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.237 -8.870 5.221 20.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.189 4.189 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.176 1.176 7 C -0.556 4.556 8 H 0.053 0.947 9 C 0.040 3.960 10 N -0.261 5.261 11 C -0.062 4.062 12 C -0.128 4.128 13 H 0.107 0.893 14 C -0.144 4.144 15 C -0.184 4.184 16 C 0.003 3.997 17 H 0.106 0.894 18 N -0.374 5.374 19 C -0.138 4.138 20 H 0.072 0.928 21 C -0.065 4.065 22 H 0.077 0.923 23 H 0.044 0.956 24 H 0.001 0.999 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.165 0.835 32 H 0.156 0.844 33 H 0.103 0.897 34 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 16.894 -8.314 4.386 19.333 hybrid contribution -0.315 0.648 1.211 1.409 sum 16.580 -7.667 5.596 19.105 Atomic orbital electron populations 1.70048 1.08071 1.28181 1.52469 1.25868 0.95664 1.03159 0.94256 0.85700 0.79403 0.78593 0.79174 1.19167 1.20213 1.17585 1.21248 0.91086 0.93259 1.50048 0.94721 1.20098 0.94369 0.86971 0.94553 1.64997 1.12862 1.17327 1.30918 1.22263 0.98177 0.95881 0.89837 1.22628 0.93736 0.97394 0.99010 0.89303 1.21978 0.96068 1.01600 0.94746 1.23791 0.95480 1.00366 0.98726 1.21205 0.95975 0.93781 0.88763 0.89399 1.58793 1.09391 1.30247 1.38979 1.22004 0.96687 0.97668 0.97464 0.92757 1.21875 0.86606 0.99768 0.98236 0.92323 0.95632 0.99863 0.95091 0.92793 0.90511 0.91575 0.90159 0.90143 0.83488 0.84371 0.89702 0.93756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.71 13.96 21.45 0.30 -60.41 16 2 C 0.01 0.47 5.47 84.65 0.46 0.93 16 3 Si 0.95 45.47 27.47 68.60 1.88 47.35 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.25 -11.39 6.54 99.48 0.65 -10.74 16 7 C -0.52 -31.47 9.39 25.60 0.24 -31.23 16 8 H 0.03 2.34 8.04 -2.92 -0.02 2.32 16 9 C 0.17 8.57 3.50 85.56 0.30 8.87 16 10 N -0.54 -23.76 5.27 -893.44 -4.71 -28.47 16 11 C 0.07 2.61 5.92 85.21 0.50 3.11 16 12 C -0.11 -3.09 3.00 -9.94 -0.03 -3.12 16 13 H 0.09 2.46 7.15 -2.39 -0.02 2.44 16 14 C -0.11 -2.28 6.61 31.38 0.21 -2.08 16 15 C -0.14 -2.38 6.70 32.79 0.22 -2.16 16 16 C 0.12 2.33 4.01 44.90 0.18 2.51 16 17 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 18 N -0.84 -15.60 8.78 -168.74 -1.48 -17.08 16 19 C -0.12 -3.32 2.37 -11.19 -0.03 -3.35 16 20 H 0.05 1.64 7.97 -2.39 -0.02 1.62 16 21 C 0.06 2.19 6.62 84.71 0.56 2.75 16 22 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 23 H 0.03 1.31 7.05 -2.39 -0.02 1.29 16 24 H -0.02 -0.82 7.28 -2.39 -0.02 -0.83 16 25 H 0.03 1.29 7.70 -2.38 -0.02 1.27 16 26 H 0.05 2.32 8.14 -2.38 -0.02 2.30 16 27 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.07 1.49 8.14 -2.39 -0.02 1.48 16 29 H 0.08 1.10 7.99 -2.39 -0.02 1.08 16 30 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.35 4.70 9.08 -89.69 -0.81 3.89 16 32 H 0.34 6.49 7.83 -89.70 -0.70 5.78 16 33 H 0.08 2.88 7.76 -2.39 -0.02 2.86 16 34 H 0.04 1.59 7.58 -2.39 -0.02 1.57 16 Total: -1.00 -68.44 264.28 -1.87 -70.31 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -0.49 Total: 12.05 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: 2.62 Total: -23.76 kcal Atomic # 7 Polarization: -100.07 SS G_CDS: -5.89 Total: -105.96 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.88 Total: 47.35 kcal Total: -68.44 -1.87 -70.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307433974.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.076 kcal (2) G-P(sol) polarization free energy of solvation -68.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds