Wall clock time and date at job start Mon Mar 30 2020 03:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 N 1.40104 * 120.00700 * 270.00475 * 12 2 1 14 14 C 1.28007 * 120.00299 * 179.97438 * 13 12 2 15 15 C 1.51848 * 126.33894 * 179.68543 * 14 13 12 16 16 C 1.55128 * 104.31399 * 156.13433 * 15 14 13 17 17 C 1.54985 * 102.22345 * 37.93557 * 16 15 14 18 18 H 1.08999 * 110.57064 * 81.30461 * 17 16 15 19 19 C 1.53008 * 110.56568 * 204.16610 * 17 16 15 20 20 C 1.51442 * 126.34202 * 0.02562 * 14 13 12 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 24 24 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 25 25 H 0.97007 * 120.00070 * 90.00199 * 12 2 1 26 26 H 1.08999 * 110.44095 * 274.96753 * 15 14 13 27 27 H 1.08999 * 110.43994 * 37.49287 * 15 14 13 28 28 H 1.08998 * 111.03716 * 279.68588 * 16 15 14 29 29 H 1.08998 * 110.72601 * 156.03736 * 16 15 14 30 30 H 1.08996 * 109.47211 * 175.78356 * 19 17 16 31 31 H 1.09003 * 109.46780 * 295.78340 * 19 17 16 32 32 H 1.08998 * 109.47378 * 55.78066 * 19 17 16 33 33 H 1.09004 * 109.98505 * 299.68385 * 20 14 13 34 34 H 1.08998 * 109.98935 * 60.94322 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0183 -0.6905 1.1962 13 7 2.2518 0.0300 2.3749 14 6 2.6780 -0.5735 3.4202 15 6 2.9842 0.0627 4.7645 16 6 2.8524 -1.1031 5.7795 17 6 3.4529 -2.2944 4.9906 18 1 4.5415 -2.2788 5.0433 19 6 2.9066 -3.6211 5.5222 20 6 2.9772 -2.0530 3.5430 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 0.7089 1.1612 -3.4844 25 1 2.1800 -1.6467 1.1722 26 1 3.9969 0.4656 4.7732 27 1 2.2599 0.8458 4.9888 28 1 1.8076 -1.2896 6.0276 29 1 3.4351 -0.9000 6.6780 30 1 3.2811 -4.4402 4.9085 31 1 3.2321 -3.7611 6.5530 32 1 1.8174 -3.6069 5.4839 33 1 2.0756 -2.6330 3.3457 34 1 3.7617 -2.3341 2.8405 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307717991.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:26 Heat of formation + Delta-G solvation = 12.886291 kcal Electronic energy + Delta-G solvation = -13738.107411 eV Core-core repulsion = 11477.664756 eV Total energy + Delta-G solvation = -2260.442656 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.41402 -35.70349 -33.62986 -31.36667 -29.99627 -27.57399 -26.46783 -25.15770 -23.52465 -20.44288 -19.88907 -18.51790 -16.69928 -15.65696 -15.59542 -14.86998 -13.67531 -13.57078 -13.32344 -13.05835 -12.61201 -12.28332 -12.02874 -11.68755 -11.62713 -11.14162 -10.98964 -10.79155 -10.71125 -10.63126 -10.43766 -10.25775 -10.16887 -9.95620 -9.19186 -8.89098 -8.46872 -6.76326 -6.08942 -4.16746 3.07438 3.26398 3.32704 3.35715 3.90412 4.39845 4.81428 4.86861 4.98397 5.23022 5.42245 5.51337 5.59515 5.66938 5.68664 5.88794 5.95236 5.99782 6.13588 6.19912 6.27817 6.45893 6.53028 6.84670 7.06860 7.19451 7.25833 7.64656 7.87472 7.94770 8.25849 8.43004 8.93337 9.49639 9.56846 10.96947 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.049228 B = 0.006331 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.647913 B = 4421.460948 C = 4718.712174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.299 3.701 3 H 0.039 0.961 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.638 5.638 13 N -0.206 5.206 14 C -0.009 4.009 15 C -0.052 4.052 16 C -0.115 4.115 17 C -0.091 4.091 18 H 0.074 0.926 19 C -0.143 4.143 20 C -0.106 4.106 21 H 0.024 0.976 22 H 0.088 0.912 23 H 0.011 0.989 24 H 0.264 0.736 25 H 0.367 0.633 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.351 -5.338 13.340 14.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.197 3.803 3 H 0.057 0.943 4 C -0.567 4.567 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.374 5.374 13 N -0.015 5.015 14 C -0.203 4.203 15 C -0.091 4.091 16 C -0.153 4.153 17 C -0.110 4.110 18 H 0.092 0.908 19 C -0.201 4.201 20 C -0.146 4.146 21 H 0.043 0.957 22 H 0.107 0.893 23 H 0.030 0.970 24 H 0.074 0.926 25 H 0.202 0.798 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.921 -4.187 12.642 13.634 hybrid contribution 0.510 -1.681 -0.819 1.938 sum 3.431 -5.868 11.823 13.638 Atomic orbital electron populations 1.22204 0.99342 0.98993 1.00345 1.18436 0.89929 0.93421 0.78519 0.94339 1.21259 1.31973 1.13123 0.90335 0.92358 1.24861 0.94915 0.95014 0.98902 1.69894 1.36214 1.22598 1.23782 0.86445 0.79164 0.79284 0.82192 1.20567 1.21032 1.19933 1.48726 1.74550 1.07523 1.06612 1.73287 1.07253 1.27231 0.93701 1.24450 1.07225 0.93657 0.95010 1.20962 1.01446 0.97117 0.89624 1.22597 1.00929 0.94598 0.97190 1.21847 0.99850 0.94689 0.94596 0.90759 1.21803 1.01039 0.96783 1.00439 1.21482 1.00853 0.95457 0.96813 0.95709 0.89328 0.96985 0.92644 0.79776 0.90766 0.91090 0.91293 0.91434 0.92846 0.92846 0.92639 0.91517 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.84 9.29 37.16 0.35 -3.49 16 2 C 0.30 7.98 3.23 -69.09 -0.22 7.75 16 3 H 0.04 1.14 8.14 -51.93 -0.42 0.72 16 4 C -0.53 -14.65 8.74 -34.44 -0.30 -14.95 16 5 H 0.06 1.59 7.79 -52.49 -0.41 1.18 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 7 N -0.89 -25.29 11.32 55.43 0.63 -24.66 16 8 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 12 N -0.64 -14.95 6.06 -5.89 -0.04 -14.98 16 13 N -0.21 -4.48 11.50 36.05 0.41 -4.06 16 14 C -0.01 -0.15 7.46 -77.98 -0.58 -0.73 16 15 C -0.05 -0.70 6.73 -26.19 -0.18 -0.88 16 16 C -0.12 -1.25 6.39 -24.56 -0.16 -1.41 16 17 C -0.09 -1.04 3.48 -88.90 -0.31 -1.35 16 18 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 19 C -0.14 -1.41 9.12 37.16 0.34 -1.07 16 20 C -0.11 -1.56 5.07 -26.85 -0.14 -1.70 16 21 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 23 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 24 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.37 8.09 7.64 -182.59 -1.39 6.70 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.07 0.75 8.05 -51.93 -0.42 0.33 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 1.01 7.83 -51.93 -0.41 0.61 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 279.80 15.07 4.22 4.22 Total: -1.00 -29.04 279.80 -7.82 -36.87 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -6.73 Total: 2.56 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -1.30 Total: -16.10 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: 1.01 Total: -43.70 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.04 -7.82 -36.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307717991.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.753 kcal (2) G-P(sol) polarization free energy of solvation -29.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds