Wall clock time and date at job start Mon Mar 30 2020 03:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.50694 * 109.47485 * 119.99894 * 2 1 3 5 5 H 1.07998 * 120.00147 * 119.99649 * 4 2 1 6 6 C 1.37877 * 120.00159 * 300.00652 * 4 2 1 7 7 N 1.31516 * 119.99943 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 119.99732 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46765 * 90.01086 * 8 6 4 10 10 H 1.48502 * 109.47091 * 210.00058 * 8 6 4 11 11 H 1.48496 * 109.47288 * 330.00520 * 8 6 4 12 12 N 1.46499 * 109.46992 * 240.00083 * 2 1 3 13 13 N 1.40106 * 119.99961 * 89.99678 * 12 2 1 14 14 C 1.28008 * 120.00185 * 179.97438 * 13 12 2 15 15 C 1.51844 * 126.33761 * 0.02721 * 14 13 12 16 16 C 1.54897 * 104.43042 * 203.76841 * 15 14 13 17 17 C 1.54976 * 102.33349 * 322.37421 * 16 15 14 18 18 C 1.51446 * 126.34500 * 180.02562 * 14 13 12 19 19 H 1.09000 * 109.98594 * 60.31061 * 18 14 13 20 20 C 1.53002 * 109.97919 * 299.05200 * 18 14 13 21 21 H 1.09001 * 109.46796 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46841 * 299.99718 * 1 2 3 23 23 H 1.08997 * 109.47617 * 59.99958 * 1 2 3 24 24 H 0.97007 * 119.99683 * 179.97438 * 7 6 4 25 25 H 0.96993 * 120.00069 * 269.99849 * 12 2 1 26 26 H 1.09003 * 110.44659 * 85.03091 * 15 14 13 27 27 H 1.09001 * 110.44351 * 322.50626 * 15 14 13 28 28 H 1.08994 * 110.83046 * 80.59153 * 16 15 14 29 29 H 1.09002 * 110.82995 * 204.16503 * 16 15 14 30 30 H 1.08997 * 110.57119 * 155.65311 * 17 16 15 31 31 H 1.09003 * 110.56988 * 278.52164 * 17 16 15 32 32 H 1.08994 * 109.47285 * 61.45376 * 20 18 14 33 33 H 1.09005 * 109.46925 * 181.45145 * 20 18 14 34 34 H 1.08997 * 109.47584 * 301.44839 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1382 -0.8591 3.5565 8 14 0.6257 1.2797 2.6541 9 1 -0.8021 0.8741 2.6995 10 1 0.9770 1.9953 3.9070 11 1 0.8488 2.1772 1.4922 12 7 2.0183 -0.6906 -1.1962 13 7 2.2517 0.0300 -2.3748 14 6 2.6789 -0.5733 -3.4199 15 6 2.9789 -2.0567 -3.5430 16 6 3.9942 -2.1497 -4.7091 17 6 3.4716 -1.0698 -5.6900 18 6 2.9785 0.0602 -4.7625 19 1 3.7548 0.8173 -4.6522 20 6 1.7094 0.6928 -5.3370 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.9041 -0.5275 4.4375 25 1 2.1800 -1.6467 -1.1722 26 1 2.0711 -2.6101 -3.7837 27 1 3.4222 -2.4333 -2.6212 28 1 5.0005 -1.9084 -4.3669 29 1 3.9666 -3.1374 -5.1693 30 1 4.2771 -0.7137 -6.3322 31 1 2.6486 -1.4615 -6.2879 32 1 1.3577 1.4759 -4.6654 33 1 1.9283 1.1234 -6.3141 34 1 0.9380 -0.0702 -5.4409 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308130970.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:54 Heat of formation + Delta-G solvation = 23.014325 kcal Electronic energy + Delta-G solvation = -13906.875976 eV Core-core repulsion = 11646.872505 eV Total energy + Delta-G solvation = -2260.003471 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.55657 -35.82141 -33.44219 -31.42694 -31.14969 -27.94526 -26.00546 -25.06038 -23.59921 -20.98474 -19.96461 -18.52729 -16.82886 -15.98292 -15.50918 -15.04049 -13.73760 -13.66702 -13.20422 -13.12138 -12.89928 -12.67217 -12.16706 -12.12691 -11.74413 -11.58160 -11.01826 -10.94591 -10.69581 -10.61280 -10.55789 -10.32128 -10.10146 -9.60838 -9.28410 -9.03328 -8.66303 -6.95118 -6.16703 -4.18044 2.93929 3.24615 3.35511 3.38401 3.73138 4.33685 4.76220 4.88687 5.06356 5.17809 5.28760 5.50407 5.52887 5.63608 5.75697 5.82888 5.91541 5.98795 6.10666 6.21792 6.30128 6.35561 6.36927 6.46320 6.53247 6.64720 6.83844 7.12249 7.45402 7.61330 8.12364 8.49576 8.84709 9.37463 9.46634 10.96010 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.051555 B = 0.007133 C = 0.006539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.983053 B = 3924.604447 C = 4281.251096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.274 3.726 3 H 0.039 0.961 4 C -0.530 4.530 5 H 0.077 0.923 6 C 0.076 3.924 7 N -0.895 5.895 8 Si 0.890 3.110 9 H -0.277 1.277 10 H -0.295 1.295 11 H -0.264 1.264 12 N -0.633 5.633 13 N -0.209 5.209 14 C 0.007 3.993 15 C -0.113 4.113 16 C -0.116 4.116 17 C -0.116 4.116 18 C -0.026 4.026 19 H 0.078 0.922 20 C -0.138 4.138 21 H 0.050 0.950 22 H 0.044 0.956 23 H 0.032 0.968 24 H 0.267 0.733 25 H 0.373 0.627 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.483 0.075 -16.327 16.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.170 3.830 3 H 0.056 0.944 4 C -0.569 4.569 5 H 0.095 0.905 6 C -0.127 4.127 7 N -0.533 5.533 8 Si 0.720 3.280 9 H -0.204 1.204 10 H -0.222 1.222 11 H -0.189 1.189 12 N -0.369 5.369 13 N -0.016 5.016 14 C -0.189 4.189 15 C -0.153 4.153 16 C -0.155 4.155 17 C -0.154 4.154 18 C -0.046 4.046 19 H 0.096 0.904 20 C -0.196 4.196 21 H 0.069 0.931 22 H 0.063 0.937 23 H 0.051 0.949 24 H 0.076 0.924 25 H 0.210 0.790 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.144 1.091 -15.569 15.608 hybrid contribution -0.387 -0.506 0.233 0.678 sum -0.244 0.586 -15.336 15.349 Atomic orbital electron populations 1.22585 1.00270 1.00695 0.98686 1.18762 0.88980 0.94033 0.81266 0.94367 1.21097 1.32815 1.14412 0.88592 0.90505 1.24836 0.95628 0.96808 0.95437 1.69880 1.45167 1.40229 0.97992 0.86818 0.80475 0.83499 0.77230 1.20391 1.22230 1.18871 1.48281 1.74761 1.07734 1.06161 1.73212 1.07729 1.27110 0.93575 1.24442 1.06080 0.93777 0.94554 1.21678 0.99267 0.95319 0.99076 1.22367 0.98693 0.98611 0.95793 1.22438 1.00336 0.95555 0.97115 1.20314 0.97825 0.96775 0.89732 0.90395 1.21773 0.96960 1.00753 1.00090 0.93077 0.93742 0.94877 0.92354 0.78972 0.90944 0.91524 0.91348 0.91582 0.91424 0.91333 0.92153 0.92930 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.76 9.00 37.16 0.33 -3.42 16 2 C 0.27 6.82 2.82 -69.09 -0.20 6.63 16 3 H 0.04 1.01 7.20 -51.93 -0.37 0.64 16 4 C -0.53 -15.00 9.32 -34.44 -0.32 -15.32 16 5 H 0.08 2.33 8.03 -52.49 -0.42 1.91 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 7 N -0.90 -27.16 13.96 55.43 0.77 -26.38 16 8 Si 0.89 22.00 24.37 -169.99 -4.14 17.86 16 9 H -0.28 -6.64 6.87 56.52 0.39 -6.25 16 10 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 11 H -0.26 -6.35 6.53 56.52 0.37 -5.98 16 12 N -0.63 -14.12 6.06 -5.88 -0.04 -14.15 16 13 N -0.21 -4.25 11.50 36.06 0.41 -3.84 16 14 C 0.01 0.11 6.76 -77.98 -0.53 -0.42 16 15 C -0.11 -1.60 5.93 -26.32 -0.16 -1.76 16 16 C -0.12 -1.29 6.95 -24.69 -0.17 -1.47 16 17 C -0.12 -1.20 6.40 -25.02 -0.16 -1.36 16 18 C -0.03 -0.33 3.43 -90.74 -0.31 -0.64 16 19 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 20 C -0.14 -1.65 9.09 37.16 0.34 -1.31 16 21 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 22 H 0.04 1.04 3.27 -51.93 -0.17 0.87 16 23 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.37 7.98 7.15 -182.60 -1.31 6.67 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.07 1.02 7.34 -51.93 -0.38 0.64 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.65 7.85 -51.93 -0.41 0.24 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 272.11 15.07 4.10 4.10 Total: -1.00 -30.14 272.11 -6.63 -36.76 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -6.47 Total: 2.62 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -1.27 Total: -16.97 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 1.15 Total: -44.37 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.14 Total: 17.86 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.14 -6.63 -36.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308130970.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.778 kcal (2) G-P(sol) polarization free energy of solvation -30.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds