Wall clock time and date at job start Mon Mar 30 2020 03:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.50694 * 109.47485 * 119.99894 * 2 1 3 5 5 H 1.07998 * 120.00147 * 119.99649 * 4 2 1 6 6 C 1.37877 * 120.00159 * 300.00652 * 4 2 1 7 7 N 1.31516 * 119.99943 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 119.99732 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46765 * 90.01086 * 8 6 4 10 10 H 1.48502 * 109.47091 * 210.00058 * 8 6 4 11 11 H 1.48496 * 109.47288 * 330.00520 * 8 6 4 12 12 N 1.46499 * 109.46992 * 240.00083 * 2 1 3 13 13 N 1.40106 * 119.99961 * 89.99678 * 12 2 1 14 14 C 1.28008 * 120.00185 * 179.97438 * 13 12 2 15 15 C 1.51844 * 126.33761 * 0.02721 * 14 13 12 16 16 C 1.54897 * 104.43042 * 203.76841 * 15 14 13 17 17 C 1.54976 * 102.33349 * 322.37421 * 16 15 14 18 18 C 1.51446 * 126.34500 * 180.02562 * 14 13 12 19 19 H 1.09000 * 109.98594 * 60.31061 * 18 14 13 20 20 C 1.53002 * 109.97919 * 299.05200 * 18 14 13 21 21 H 1.09001 * 109.46796 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46841 * 299.99718 * 1 2 3 23 23 H 1.08997 * 109.47617 * 59.99958 * 1 2 3 24 24 H 0.97007 * 119.99683 * 179.97438 * 7 6 4 25 25 H 0.96993 * 120.00069 * 269.99849 * 12 2 1 26 26 H 1.09003 * 110.44659 * 85.03091 * 15 14 13 27 27 H 1.09001 * 110.44351 * 322.50626 * 15 14 13 28 28 H 1.08994 * 110.83046 * 80.59153 * 16 15 14 29 29 H 1.09002 * 110.82995 * 204.16503 * 16 15 14 30 30 H 1.08997 * 110.57119 * 155.65311 * 17 16 15 31 31 H 1.09003 * 110.56988 * 278.52164 * 17 16 15 32 32 H 1.08994 * 109.47285 * 61.45376 * 20 18 14 33 33 H 1.09005 * 109.46925 * 181.45145 * 20 18 14 34 34 H 1.08997 * 109.47584 * 301.44839 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1382 -0.8591 3.5565 8 14 0.6257 1.2797 2.6541 9 1 -0.8021 0.8741 2.6995 10 1 0.9770 1.9953 3.9070 11 1 0.8488 2.1772 1.4922 12 7 2.0183 -0.6906 -1.1962 13 7 2.2517 0.0300 -2.3748 14 6 2.6789 -0.5733 -3.4199 15 6 2.9789 -2.0567 -3.5430 16 6 3.9942 -2.1497 -4.7091 17 6 3.4716 -1.0698 -5.6900 18 6 2.9785 0.0602 -4.7625 19 1 3.7548 0.8173 -4.6522 20 6 1.7094 0.6928 -5.3370 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.9041 -0.5275 4.4375 25 1 2.1800 -1.6467 -1.1722 26 1 2.0711 -2.6101 -3.7837 27 1 3.4222 -2.4333 -2.6212 28 1 5.0005 -1.9084 -4.3669 29 1 3.9666 -3.1374 -5.1693 30 1 4.2771 -0.7137 -6.3322 31 1 2.6486 -1.4615 -6.2879 32 1 1.3577 1.4759 -4.6654 33 1 1.9283 1.1234 -6.3141 34 1 0.9380 -0.0702 -5.4409 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308130970.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:53 Heat of formation + Delta-G solvation = 3.019116 kcal Electronic energy + Delta-G solvation = -13907.743034 eV Core-core repulsion = 11646.872505 eV Total energy + Delta-G solvation = -2260.870528 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.74854 -37.47404 -35.21769 -33.37787 -32.18005 -29.50783 -27.29335 -26.97438 -24.76679 -22.54664 -21.28123 -20.05604 -18.60172 -17.55640 -17.02621 -16.48853 -15.48758 -15.08972 -14.70640 -14.41605 -14.21038 -14.02044 -13.88212 -13.53643 -13.35190 -12.89716 -12.75409 -12.23499 -12.06779 -11.91442 -11.79778 -11.52212 -11.50721 -11.42512 -11.27699 -10.82945 -10.52931 -8.59556 -8.38608 -6.45508 1.28380 1.34916 1.45826 1.56383 2.18649 2.26464 2.96847 3.73982 3.81386 4.11080 4.20560 4.40859 4.45908 4.48204 4.59659 4.64608 4.73902 4.83750 4.87701 4.94118 5.01643 5.02829 5.19929 5.27551 5.30822 5.37948 5.41158 5.50171 5.55836 5.85370 6.12574 6.51525 6.65019 7.21783 7.85662 8.77527 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.051555 B = 0.007133 C = 0.006539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.983053 B = 3924.604447 C = 4281.251096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.282 3.718 3 H 0.022 0.978 4 C -0.537 4.537 5 H 0.038 0.962 6 C 0.023 3.977 7 N -0.940 5.940 8 Si 0.952 3.048 9 H -0.259 1.259 10 H -0.291 1.291 11 H -0.253 1.253 12 N -0.651 5.651 13 N -0.255 5.255 14 C 0.028 3.972 15 C -0.121 4.121 16 C -0.111 4.111 17 C -0.106 4.106 18 C -0.031 4.031 19 H 0.081 0.919 20 C -0.134 4.134 21 H 0.051 0.949 22 H 0.043 0.957 23 H 0.050 0.950 24 H 0.271 0.729 25 H 0.371 0.629 26 H 0.082 0.918 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.039 0.961 33 H 0.082 0.918 34 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.047 0.752 -19.049 19.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.177 3.823 3 H 0.040 0.960 4 C -0.576 4.576 5 H 0.057 0.943 6 C -0.176 4.176 7 N -0.579 5.579 8 Si 0.778 3.222 9 H -0.185 1.185 10 H -0.218 1.218 11 H -0.178 1.178 12 N -0.388 5.388 13 N -0.061 5.061 14 C -0.168 4.168 15 C -0.161 4.161 16 C -0.149 4.149 17 C -0.144 4.144 18 C -0.052 4.052 19 H 0.099 0.901 20 C -0.192 4.192 21 H 0.070 0.930 22 H 0.061 0.939 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.208 0.792 26 H 0.101 0.899 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.058 0.942 33 H 0.101 0.899 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.385 1.763 -18.318 18.406 hybrid contribution -0.086 -0.819 0.912 1.229 sum -0.471 0.943 -17.405 17.437 Atomic orbital electron populations 1.22449 0.98554 1.01006 0.99374 1.18412 0.90199 0.92603 0.81101 0.96031 1.21329 1.32224 1.13431 0.90629 0.94349 1.25698 0.97013 1.00015 0.94903 1.70010 1.46922 1.42272 0.98712 0.85814 0.79293 0.79604 0.77513 1.18508 1.21811 1.17757 1.47964 1.76708 1.07413 1.06699 1.73280 1.11449 1.27452 0.93891 1.25440 1.00970 0.95672 0.94715 1.21825 1.00732 0.93645 0.99892 1.22390 0.97453 1.00479 0.94569 1.22452 1.01605 0.93797 0.96528 1.20584 0.98611 0.97964 0.88072 0.90097 1.21737 0.96226 1.00169 1.01045 0.92996 0.93907 0.93098 0.92008 0.79246 0.89938 0.93402 0.91500 0.89201 0.88860 0.89761 0.94214 0.89946 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.00 9.00 71.98 0.65 -6.36 16 2 C 0.28 14.29 2.82 44.24 0.12 14.42 16 3 H 0.02 1.16 7.20 -2.39 -0.02 1.15 16 4 C -0.54 -31.51 9.32 25.60 0.24 -31.27 16 5 H 0.04 2.47 8.03 -2.91 -0.02 2.45 16 6 C 0.02 1.33 5.45 84.65 0.46 1.79 16 7 N -0.94 -58.60 13.96 21.45 0.30 -58.30 16 8 Si 0.95 45.35 24.37 68.60 1.67 47.03 16 9 H -0.26 -11.59 6.87 99.48 0.68 -10.91 16 10 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 11 H -0.25 -11.58 6.53 99.48 0.65 -10.93 16 12 N -0.65 -29.79 6.06 -172.53 -1.05 -30.84 16 13 N -0.25 -10.41 11.50 -39.75 -0.46 -10.87 16 14 C 0.03 0.89 6.76 47.13 0.32 1.21 16 15 C -0.12 -3.26 5.93 30.86 0.18 -3.08 16 16 C -0.11 -2.11 6.95 31.92 0.22 -1.89 16 17 C -0.11 -1.72 6.40 31.70 0.20 -1.52 16 18 C -0.03 -0.73 3.43 -10.87 -0.04 -0.76 16 19 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 20 C -0.13 -2.82 9.09 71.98 0.65 -2.16 16 21 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 22 H 0.04 1.92 3.27 -2.39 -0.01 1.91 16 23 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.27 15.69 8.31 -92.70 -0.77 14.91 16 25 H 0.37 16.54 7.15 -213.32 -1.53 15.02 16 26 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.05 1.48 7.34 -2.39 -0.02 1.46 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.08 1.16 7.85 -2.39 -0.02 1.14 16 32 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -66.91 272.11 2.95 -63.97 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -0.54 Total: 18.63 kcal Atomic # 6 Polarization: -32.63 SS G_CDS: 3.02 Total: -29.61 kcal Atomic # 7 Polarization: -98.81 SS G_CDS: -1.20 Total: -100.01 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.67 Total: 47.03 kcal Total: -66.91 2.95 -63.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308130970.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.986 kcal (2) G-P(sol) polarization free energy of solvation -66.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds