Wall clock time and date at job start Mon Mar 30 2020 03:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46412 * 2 1 4 4 C 1.50699 * 109.47193 * 120.00127 * 2 1 3 5 5 H 1.08000 * 120.00005 * 120.00770 * 4 2 1 6 6 C 1.37880 * 119.99921 * 300.00147 * 4 2 1 7 7 N 1.31510 * 119.99976 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99793 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47039 * 90.00039 * 8 6 4 10 10 H 1.48503 * 109.47257 * 209.99917 * 8 6 4 11 11 H 1.48498 * 109.47398 * 330.00272 * 8 6 4 12 12 N 1.46499 * 109.47276 * 240.00419 * 2 1 3 13 13 N 1.40105 * 120.00063 * 89.99692 * 12 2 1 14 14 C 1.28006 * 120.00257 * 180.02562 * 13 12 2 15 15 C 1.50696 * 120.00394 * 180.02562 * 14 13 12 16 16 C 1.54269 * 110.03392 * 237.90783 * 15 14 13 17 17 C 1.54965 * 104.16086 * 217.13745 * 16 15 14 18 18 C 1.54892 * 102.77850 * 37.88504 * 17 16 15 19 19 C 1.53875 * 110.03300 * 120.68965 * 15 14 13 20 20 H 1.09007 * 109.46853 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47549 * 299.99472 * 1 2 3 22 22 H 1.08998 * 109.47074 * 60.00006 * 1 2 3 23 23 H 0.97007 * 119.99893 * 180.02562 * 7 6 4 24 24 H 0.96999 * 119.99984 * 269.99501 * 12 2 1 25 25 H 1.08004 * 119.99321 * 359.97438 * 14 13 12 26 26 H 1.08999 * 110.01630 * 359.30183 * 15 14 13 27 27 H 1.09003 * 110.48528 * 335.77952 * 16 15 14 28 28 H 1.08995 * 110.48550 * 98.42104 * 16 15 14 29 29 H 1.09002 * 110.71862 * 279.57479 * 17 16 15 30 30 H 1.08990 * 110.92350 * 156.29357 * 17 16 15 31 31 H 1.09002 * 110.48764 * 203.40775 * 18 17 16 32 32 H 1.08996 * 110.59671 * 80.81447 * 18 17 16 33 33 H 1.09005 * 110.03017 * 238.57190 * 19 15 14 34 34 H 1.09005 * 110.03471 * 359.95195 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6534 -1.5884 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8295 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.6297 -0.5460 4.4123 10 1 1.3431 -0.9494 5.1120 11 1 2.4859 -2.5663 3.7118 12 7 2.0184 -0.6905 -1.1962 13 7 2.2518 0.0301 -2.3748 14 6 2.6781 -0.5733 -3.4202 15 6 2.9298 0.2019 -4.6877 16 6 2.0820 -0.3779 -5.8389 17 6 3.0025 -0.2670 -7.0806 18 6 4.3995 -0.6041 -6.5027 19 6 4.4026 0.0585 -5.1096 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 0.7086 1.1611 3.4845 24 1 2.1801 -1.6466 -1.1722 25 1 2.8581 -1.6379 -3.3934 26 1 2.6853 1.2533 -4.5368 27 1 1.8324 -1.4203 -5.6413 28 1 1.1765 0.2120 -5.9803 29 1 2.9855 0.7455 -7.4841 30 1 2.7154 -0.9902 -7.8438 31 1 5.1841 -0.1794 -7.1290 32 1 4.5269 -1.6828 -6.4122 33 1 4.8726 1.0405 -5.1643 34 1 4.9356 -0.5710 -4.3971 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308141345.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:46 Heat of formation + Delta-G solvation = 15.835670 kcal Electronic energy + Delta-G solvation = -13480.522123 eV Core-core repulsion = 11220.207362 eV Total energy + Delta-G solvation = -2260.314761 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.24394 -36.09176 -33.86783 -31.37544 -29.06083 -28.57780 -26.43294 -25.14828 -21.50307 -20.60073 -20.09995 -19.16090 -17.01039 -15.95035 -15.31262 -14.95615 -14.76639 -13.67094 -13.27158 -12.86060 -12.57090 -12.39852 -11.66950 -11.30349 -11.14063 -11.05235 -10.99090 -10.94611 -10.70370 -10.61497 -10.46307 -10.25381 -10.16492 -10.03873 -9.30173 -8.93869 -8.47443 -6.84121 -6.09506 -4.17274 3.10188 3.26401 3.32533 3.35269 3.96282 4.40618 4.73136 4.78642 4.91979 5.22639 5.52034 5.54412 5.59720 5.67255 5.71596 5.78797 5.92607 5.95010 6.10817 6.33199 6.36711 6.44227 6.60321 6.82198 7.06003 7.09946 7.23415 7.63478 7.85817 7.93823 8.24319 8.41502 8.92537 9.49038 9.54107 10.96465 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.065168 B = 0.005336 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.557777 B = 5246.285430 C = 5483.712331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.299 3.701 3 H 0.039 0.961 4 C -0.528 4.528 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.642 5.642 13 N -0.215 5.215 14 C -0.029 4.029 15 C -0.025 4.025 16 C -0.114 4.114 17 C -0.125 4.125 18 C -0.124 4.124 19 C -0.115 4.115 20 H 0.024 0.976 21 H 0.088 0.912 22 H 0.011 0.989 23 H 0.264 0.736 24 H 0.365 0.635 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.815 -2.558 -14.607 15.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.197 3.803 3 H 0.056 0.944 4 C -0.567 4.567 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.730 3.270 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.378 5.378 13 N -0.023 5.023 14 C -0.243 4.243 15 C -0.046 4.046 16 C -0.153 4.153 17 C -0.163 4.163 18 C -0.162 4.162 19 C -0.154 4.154 20 H 0.043 0.957 21 H 0.107 0.893 22 H 0.030 0.970 23 H 0.074 0.926 24 H 0.201 0.799 25 H 0.104 0.896 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.379 -1.431 -13.889 14.366 hybrid contribution 0.534 -1.732 0.800 1.981 sum 3.913 -3.164 -13.090 14.023 Atomic orbital electron populations 1.22199 0.99327 0.99002 1.00344 1.18431 0.89946 0.93402 0.78563 0.94353 1.21265 1.31966 1.13163 0.90353 0.92344 1.24864 0.94878 0.95044 0.98920 1.69899 1.36141 1.22666 1.23787 0.86440 0.78583 0.79861 0.82162 1.20565 1.21042 1.19927 1.48915 1.74537 1.07392 1.06998 1.73328 1.05682 1.28915 0.94402 1.25070 1.08139 0.97016 0.94065 1.20364 0.94400 0.99292 0.90526 1.22399 0.97890 1.01284 0.93699 1.22507 0.95268 1.01193 0.97289 1.22364 0.97025 1.00473 0.96302 1.22172 0.96210 1.00790 0.96246 0.95694 0.89328 0.96991 0.92642 0.79944 0.89648 0.90152 0.91520 0.91667 0.91641 0.91911 0.92064 0.91821 0.91798 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 9.29 37.16 0.35 -3.48 16 2 C 0.30 7.95 3.23 -69.08 -0.22 7.73 16 3 H 0.04 1.13 8.14 -51.92 -0.42 0.71 16 4 C -0.53 -14.64 8.74 -34.44 -0.30 -14.94 16 5 H 0.06 1.59 7.79 -52.49 -0.41 1.18 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 7 N -0.89 -25.27 11.32 55.43 0.63 -24.64 16 8 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.64 -14.99 6.09 -5.88 -0.04 -15.03 16 13 N -0.21 -4.60 11.39 32.67 0.37 -4.23 16 14 C -0.03 -0.49 9.29 -13.87 -0.13 -0.62 16 15 C -0.03 -0.34 3.37 -90.65 -0.31 -0.65 16 16 C -0.11 -1.32 6.36 -25.03 -0.16 -1.48 16 17 C -0.12 -1.19 6.91 -24.70 -0.17 -1.36 16 18 C -0.12 -1.20 6.83 -25.07 -0.17 -1.37 16 19 C -0.12 -1.36 6.45 -25.61 -0.17 -1.52 16 20 H 0.02 0.60 8.14 -51.92 -0.42 0.18 16 21 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 22 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 23 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 24 H 0.36 7.98 8.56 -182.59 -1.56 6.42 16 25 H 0.09 1.39 8.00 -52.48 -0.42 0.97 16 26 H 0.08 1.18 8.12 -51.93 -0.42 0.76 16 27 H 0.07 0.77 7.85 -51.93 -0.41 0.37 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.82 7.67 -51.93 -0.40 0.42 16 LS Contribution 281.07 15.07 4.24 4.24 Total: -1.00 -28.82 281.07 -8.07 -36.89 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -6.87 Total: 2.61 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -1.37 Total: -15.98 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: 0.96 Total: -43.90 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.82 -8.07 -36.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308141345.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.725 kcal (2) G-P(sol) polarization free energy of solvation -28.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds