Wall clock time and date at job start Mon Mar 30 2020 03:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46412 * 2 1 4 4 C 1.50699 * 109.47193 * 120.00127 * 2 1 3 5 5 H 1.08000 * 120.00005 * 120.00770 * 4 2 1 6 6 C 1.37880 * 119.99921 * 300.00147 * 4 2 1 7 7 N 1.31510 * 119.99976 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99793 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47039 * 90.00039 * 8 6 4 10 10 H 1.48503 * 109.47257 * 209.99917 * 8 6 4 11 11 H 1.48498 * 109.47398 * 330.00272 * 8 6 4 12 12 N 1.46499 * 109.47276 * 240.00419 * 2 1 3 13 13 N 1.40105 * 120.00063 * 89.99692 * 12 2 1 14 14 C 1.28006 * 120.00257 * 180.02562 * 13 12 2 15 15 C 1.50696 * 120.00394 * 180.02562 * 14 13 12 16 16 C 1.54269 * 110.03392 * 237.90783 * 15 14 13 17 17 C 1.54965 * 104.16086 * 217.13745 * 16 15 14 18 18 C 1.54892 * 102.77850 * 37.88504 * 17 16 15 19 19 C 1.53875 * 110.03300 * 120.68965 * 15 14 13 20 20 H 1.09007 * 109.46853 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47549 * 299.99472 * 1 2 3 22 22 H 1.08998 * 109.47074 * 60.00006 * 1 2 3 23 23 H 0.97007 * 119.99893 * 180.02562 * 7 6 4 24 24 H 0.96999 * 119.99984 * 269.99501 * 12 2 1 25 25 H 1.08004 * 119.99321 * 359.97438 * 14 13 12 26 26 H 1.08999 * 110.01630 * 359.30183 * 15 14 13 27 27 H 1.09003 * 110.48528 * 335.77952 * 16 15 14 28 28 H 1.08995 * 110.48550 * 98.42104 * 16 15 14 29 29 H 1.09002 * 110.71862 * 279.57479 * 17 16 15 30 30 H 1.08990 * 110.92350 * 156.29357 * 17 16 15 31 31 H 1.09002 * 110.48764 * 203.40775 * 18 17 16 32 32 H 1.08996 * 110.59671 * 80.81447 * 18 17 16 33 33 H 1.09005 * 110.03017 * 238.57190 * 19 15 14 34 34 H 1.09005 * 110.03471 * 359.95195 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6534 -1.5884 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8295 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.6297 -0.5460 4.4123 10 1 1.3431 -0.9494 5.1120 11 1 2.4859 -2.5663 3.7118 12 7 2.0184 -0.6905 -1.1962 13 7 2.2518 0.0301 -2.3748 14 6 2.6781 -0.5733 -3.4202 15 6 2.9298 0.2019 -4.6877 16 6 2.0820 -0.3779 -5.8389 17 6 3.0025 -0.2670 -7.0806 18 6 4.3995 -0.6041 -6.5027 19 6 4.4026 0.0585 -5.1096 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 0.7086 1.1611 3.4845 24 1 2.1801 -1.6466 -1.1722 25 1 2.8581 -1.6379 -3.3934 26 1 2.6853 1.2533 -4.5368 27 1 1.8324 -1.4203 -5.6413 28 1 1.1765 0.2120 -5.9803 29 1 2.9855 0.7455 -7.4841 30 1 2.7154 -0.9902 -7.8438 31 1 5.1841 -0.1794 -7.1290 32 1 4.5269 -1.6828 -6.4122 33 1 4.8726 1.0405 -5.1643 34 1 4.9356 -0.5710 -4.3971 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308141345.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:45 Heat of formation + Delta-G solvation = -1.119055 kcal Electronic energy + Delta-G solvation = -13481.257335 eV Core-core repulsion = 11220.207362 eV Total energy + Delta-G solvation = -2261.049973 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.33527 -37.74518 -35.72787 -33.24224 -30.48454 -29.46949 -28.02899 -27.25307 -23.01470 -21.99355 -21.39592 -20.35618 -18.82826 -17.61829 -16.99397 -16.21487 -15.99575 -15.35398 -14.52335 -14.29094 -14.12275 -14.05814 -13.41407 -12.98635 -12.84600 -12.71616 -12.29907 -12.22390 -11.94964 -11.86509 -11.82610 -11.73530 -11.50648 -11.33796 -11.10206 -10.73745 -10.58147 -8.60715 -8.18239 -6.35479 1.41885 1.42667 1.53434 1.62967 2.24743 2.50313 3.10341 3.80388 3.89133 3.94104 4.26965 4.50968 4.64073 4.71989 4.75601 4.78215 4.93746 4.95537 5.03217 5.12225 5.17728 5.18489 5.26781 5.42497 5.42705 5.49495 5.58313 5.58938 5.80300 5.89530 6.21517 6.44986 6.86798 7.36585 7.90414 8.87113 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.065168 B = 0.005336 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.557777 B = 5246.285430 C = 5483.712331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.308 3.692 3 H -0.004 1.004 4 C -0.548 4.548 5 H 0.059 0.941 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.972 3.028 9 H -0.276 1.276 10 H -0.278 1.278 11 H -0.267 1.267 12 N -0.657 5.657 13 N -0.267 5.267 14 C 0.013 3.987 15 C -0.031 4.031 16 C -0.113 4.113 17 C -0.118 4.118 18 C -0.119 4.119 19 C -0.114 4.114 20 H 0.029 0.971 21 H 0.068 0.932 22 H 0.016 0.984 23 H 0.267 0.733 24 H 0.369 0.631 25 H 0.100 0.900 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.680 -3.704 -15.967 17.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.204 3.796 3 H 0.014 0.986 4 C -0.587 4.587 5 H 0.077 0.923 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.796 3.204 9 H -0.201 1.201 10 H -0.203 1.203 11 H -0.191 1.191 12 N -0.395 5.395 13 N -0.073 5.073 14 C -0.203 4.203 15 C -0.052 4.052 16 C -0.151 4.151 17 C -0.156 4.156 18 C -0.156 4.156 19 C -0.153 4.153 20 H 0.048 0.952 21 H 0.087 0.913 22 H 0.035 0.965 23 H 0.076 0.924 24 H 0.206 0.794 25 H 0.117 0.883 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.246 -2.581 -15.270 16.058 hybrid contribution 0.318 -1.361 1.033 1.737 sum 4.564 -3.941 -14.238 15.462 Atomic orbital electron populations 1.22010 0.98996 0.98901 0.99491 1.18048 0.90167 0.91388 0.80018 0.98582 1.21533 1.32451 1.13452 0.91299 0.92289 1.25739 0.94848 0.95676 1.01974 1.70024 1.36846 1.23822 1.24674 0.85352 0.78016 0.78875 0.78111 1.20145 1.20344 1.19093 1.48472 1.76525 1.07289 1.07204 1.73420 1.09512 1.29561 0.94838 1.25842 1.02602 0.98079 0.93763 1.20586 0.96690 0.98302 0.89632 1.22397 0.98007 1.01058 0.93682 1.22495 0.94280 1.02279 0.96502 1.22359 0.97741 1.00711 0.94831 1.22164 0.94201 1.01365 0.97589 0.95225 0.91327 0.96520 0.92382 0.79441 0.88270 0.91339 0.91400 0.91659 0.90895 0.90147 0.90356 0.91251 0.91228 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.07 9.29 71.98 0.67 -6.40 16 2 C 0.31 16.92 3.23 44.24 0.14 17.06 16 3 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 4 C -0.55 -30.92 8.74 25.60 0.22 -30.70 16 5 H 0.06 3.23 7.79 -2.91 -0.02 3.21 16 6 C 0.02 0.98 5.30 84.66 0.45 1.43 16 7 N -0.92 -53.07 11.32 21.45 0.24 -52.83 16 8 Si 0.97 43.37 29.54 68.60 2.03 45.40 16 9 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 10 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 11 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 12 N -0.66 -31.37 6.09 -172.52 -1.05 -32.42 16 13 N -0.27 -11.59 11.39 -50.47 -0.57 -12.17 16 14 C 0.01 0.42 9.29 88.66 0.82 1.24 16 15 C -0.03 -0.81 3.37 -10.82 -0.04 -0.85 16 16 C -0.11 -2.34 6.36 31.70 0.20 -2.14 16 17 C -0.12 -1.83 6.91 31.91 0.22 -1.61 16 18 C -0.12 -1.90 6.83 31.67 0.22 -1.68 16 19 C -0.11 -2.45 6.45 31.32 0.20 -2.25 16 20 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 21 H 0.07 3.86 6.07 -2.39 -0.01 3.84 16 22 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.27 14.53 8.31 -92.70 -0.77 13.76 16 24 H 0.37 16.33 8.56 -213.32 -1.83 14.51 16 25 H 0.10 3.06 8.00 -2.91 -0.02 3.03 16 26 H 0.07 1.97 8.12 -2.39 -0.02 1.95 16 27 H 0.07 1.40 7.85 -2.39 -0.02 1.38 16 28 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.06 1.33 7.67 -2.38 -0.02 1.31 16 Total: -1.00 -62.55 281.07 2.99 -59.57 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -0.77 Total: 18.34 kcal Atomic # 6 Polarization: -29.00 SS G_CDS: 3.11 Total: -25.89 kcal Atomic # 7 Polarization: -96.03 SS G_CDS: -1.38 Total: -97.42 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -62.55 2.99 -59.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308141345.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.447 kcal (2) G-P(sol) polarization free energy of solvation -62.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds