Wall clock time and date at job start Mon Mar 30 2020 03:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46996 * 2 1 4 4 C 1.50700 * 109.46986 * 119.99757 * 2 1 3 5 5 N 1.28008 * 119.99851 * 239.99874 * 4 2 1 6 6 N 1.40109 * 119.99837 * 180.02562 * 5 4 2 7 7 C 1.46498 * 119.99760 * 180.27649 * 6 5 4 8 8 C 1.52996 * 109.47059 * 179.72304 * 7 6 5 9 9 C 1.53005 * 117.49911 * 243.61954 * 8 7 6 10 10 C 1.52998 * 117.49938 * 174.99865 * 8 7 6 11 11 C 1.52997 * 109.46951 * 239.99478 * 2 1 3 12 12 C 1.50699 * 109.47004 * 65.00290 * 11 2 1 13 13 H 1.07999 * 119.99939 * 359.97438 * 12 11 2 14 14 C 1.37875 * 120.00065 * 179.97438 * 12 11 2 15 15 N 1.31511 * 120.00095 * 179.97438 * 14 12 11 16 16 Si 1.86806 * 120.00021 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47090 * 90.00080 * 16 14 12 18 18 H 1.48496 * 109.46946 * 210.00124 * 16 14 12 19 19 H 1.48497 * 109.46905 * 329.99968 * 16 14 12 20 20 H 1.08996 * 109.47248 * 59.99950 * 1 2 3 21 21 H 1.08996 * 109.47200 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46932 * 300.00300 * 1 2 3 23 23 H 1.08001 * 120.00295 * 59.99474 * 4 2 1 24 24 H 0.97001 * 119.99794 * 359.97438 * 6 5 4 25 25 H 1.09004 * 109.46963 * 299.72100 * 7 6 5 26 26 H 1.08994 * 109.47567 * 59.72252 * 7 6 5 27 27 H 1.09003 * 115.55353 * 29.32634 * 8 7 6 28 28 H 1.09000 * 117.49570 * 0.02562 * 9 8 7 29 29 H 1.09002 * 117.50143 * 145.01658 * 9 8 7 30 30 H 1.09004 * 117.49500 * 214.97595 * 10 8 7 31 31 H 1.08998 * 117.50079 * 0.02562 * 10 8 7 32 32 H 1.08997 * 109.47243 * 185.00069 * 11 2 1 33 33 H 1.08999 * 109.47233 * 305.00667 * 11 2 1 34 34 H 0.97003 * 120.00198 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 2.7683 -0.0882 2.0731 6 7 3.2357 -0.7488 3.2168 7 6 4.0730 -0.0350 4.1841 8 6 4.4385 -0.9756 5.3342 9 6 3.9261 -0.6166 6.7305 10 6 5.4095 -0.4515 6.3940 11 6 2.0400 -0.7214 -1.2492 12 6 1.6413 0.0569 -2.4765 13 1 1.0800 0.9740 -2.3757 14 6 1.9932 -0.4019 -3.7282 15 7 1.6449 0.2770 -4.7993 16 14 2.9635 -1.9887 -3.9026 17 1 2.0242 -3.1329 -4.0199 18 1 3.8125 -1.9185 -5.1190 19 1 3.8251 -2.1759 -2.7077 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.7714 -1.7443 1.4015 24 1 3.0013 -1.6775 3.3703 25 1 4.9831 0.3089 3.6928 26 1 3.5254 0.8221 4.5759 27 1 4.4980 -2.0329 5.0760 28 1 3.3282 0.2894 6.8296 29 1 3.6482 -1.4379 7.3911 30 1 6.1075 -1.1642 6.8334 31 1 5.7876 0.5635 6.2723 32 1 3.1263 -0.7996 -1.2055 33 1 1.6053 -1.7198 -1.2951 34 1 1.8927 -0.0456 -5.6799 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308278665.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:41 Heat of formation + Delta-G solvation = 49.833871 kcal Electronic energy + Delta-G solvation = -13112.550249 eV Core-core repulsion = 10853.709761 eV Total energy + Delta-G solvation = -2258.840488 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.08845 -36.82334 -34.65114 -32.29887 -30.83293 -27.51129 -25.75824 -23.44628 -22.65632 -21.24161 -20.79901 -18.91446 -16.98505 -16.37745 -16.22107 -14.70675 -14.26876 -14.07148 -13.95234 -13.28835 -13.13601 -12.52130 -12.10493 -11.82774 -11.63317 -11.48884 -11.04471 -10.98800 -10.75015 -10.70551 -10.25995 -9.97111 -9.77003 -9.66728 -9.43410 -9.05067 -8.48902 -7.56363 -5.99400 -3.96509 2.84112 3.12693 3.34057 3.41813 3.46354 3.57884 4.45969 4.49765 4.64167 4.72072 5.03549 5.34198 5.34543 5.42584 5.51548 5.60810 5.72312 5.77728 5.83445 5.98882 6.07989 6.17818 6.43998 6.68813 6.85838 6.99300 7.06742 7.32556 7.42820 7.50890 7.83598 8.58722 8.89664 9.06033 9.63285 11.13873 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.049622 B = 0.005035 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.125829 B = 5559.514687 C = 5886.882934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.025 4.025 3 H 0.078 0.922 4 C 0.056 3.944 5 N -0.251 5.251 6 N -0.681 5.681 7 C 0.194 3.806 8 C -0.166 4.166 9 C -0.178 4.178 10 C -0.171 4.171 11 C -0.003 4.003 12 C -0.513 4.513 13 H 0.076 0.924 14 C 0.067 3.933 15 N -0.904 5.904 16 Si 0.877 3.123 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.266 1.266 20 H 0.074 0.926 21 H 0.046 0.954 22 H 0.035 0.965 23 H 0.090 0.910 24 H 0.369 0.631 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.107 0.893 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.016 0.984 33 H 0.013 0.987 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.855 -3.738 19.436 20.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.046 4.046 3 H 0.097 0.903 4 C -0.160 4.160 5 N -0.054 5.054 6 N -0.420 5.420 7 C 0.070 3.930 8 C -0.185 4.185 9 C -0.215 4.215 10 C -0.208 4.208 11 C -0.042 4.042 12 C -0.551 4.551 13 H 0.094 0.906 14 C -0.134 4.134 15 N -0.544 5.544 16 Si 0.704 3.296 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.191 1.191 20 H 0.093 0.907 21 H 0.065 0.935 22 H 0.054 0.946 23 H 0.107 0.893 24 H 0.206 0.794 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.125 0.875 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.035 0.965 33 H 0.032 0.968 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.437 -2.735 19.592 20.273 hybrid contribution 0.175 -2.196 -0.162 2.209 sum 4.612 -4.930 19.430 20.570 Atomic orbital electron populations 1.21674 0.94629 1.01175 1.01184 1.19966 0.95294 0.99612 0.89679 0.90341 1.26077 0.96472 0.97653 0.95816 1.73663 1.09851 1.26455 0.95440 1.47928 1.60196 1.12110 1.21769 1.20366 0.93397 0.92985 0.86280 1.22445 1.05272 1.00390 0.90443 1.23078 0.96946 1.03472 0.98012 1.22944 0.92836 1.02759 1.02305 1.19590 0.96166 0.95799 0.92614 1.21109 1.35399 1.09676 0.88939 0.90585 1.24995 0.95591 0.96917 0.95924 1.69909 1.47138 1.39315 0.98002 0.86821 0.80696 0.84370 0.77663 1.20342 1.21485 1.19103 0.90694 0.93477 0.94596 0.89286 0.79399 0.92580 0.92882 0.87538 0.88507 0.88844 0.88586 0.88397 0.96521 0.96825 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 8.99 37.16 0.33 -2.02 16 2 C -0.02 -0.50 2.75 -91.77 -0.25 -0.75 16 3 H 0.08 1.68 8.11 -51.93 -0.42 1.26 16 4 C 0.06 1.01 9.66 -13.87 -0.13 0.88 16 5 N -0.25 -4.55 11.38 32.67 0.37 -4.18 16 6 N -0.68 -10.09 6.62 -10.62 -0.07 -10.16 16 7 C 0.19 2.38 6.95 -4.04 -0.03 2.35 16 8 C -0.17 -1.56 5.85 -90.62 -0.53 -2.09 16 9 C -0.18 -1.43 10.18 -26.73 -0.27 -1.70 16 10 C -0.17 -1.32 10.25 -26.73 -0.27 -1.60 16 11 C 0.00 -0.08 3.50 -27.89 -0.10 -0.17 16 12 C -0.51 -14.41 8.96 -34.44 -0.31 -14.71 16 13 H 0.08 2.27 7.30 -52.49 -0.38 1.89 16 14 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 15 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 16 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 20 H 0.07 1.50 6.95 -51.93 -0.36 1.14 16 21 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.09 1.45 8.00 -52.49 -0.42 1.03 16 24 H 0.37 4.85 8.34 -182.59 -1.52 3.32 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.66 7.87 -51.93 -0.41 0.25 16 27 H 0.11 0.97 8.04 -51.93 -0.42 0.55 16 28 H 0.10 0.78 8.03 -51.93 -0.42 0.36 16 29 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 33 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 287.30 15.07 4.33 4.33 Total: -1.00 -30.74 287.30 -7.75 -38.49 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.82 Total: -0.59 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -1.66 Total: -17.97 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: 1.08 Total: -41.41 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.74 -7.75 -38.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308278665.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.320 kcal (2) G-P(sol) polarization free energy of solvation -30.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds