Wall clock time and date at job start Mon Mar 30 2020 03:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46996 * 2 1 4 4 C 1.50700 * 109.46986 * 119.99757 * 2 1 3 5 5 N 1.28008 * 119.99851 * 239.99874 * 4 2 1 6 6 N 1.40109 * 119.99837 * 180.02562 * 5 4 2 7 7 C 1.46498 * 119.99760 * 180.27649 * 6 5 4 8 8 C 1.52996 * 109.47059 * 179.72304 * 7 6 5 9 9 C 1.53005 * 117.49911 * 243.61954 * 8 7 6 10 10 C 1.52998 * 117.49938 * 174.99865 * 8 7 6 11 11 C 1.52997 * 109.46951 * 239.99478 * 2 1 3 12 12 C 1.50699 * 109.47004 * 65.00290 * 11 2 1 13 13 H 1.07999 * 119.99939 * 359.97438 * 12 11 2 14 14 C 1.37875 * 120.00065 * 179.97438 * 12 11 2 15 15 N 1.31511 * 120.00095 * 179.97438 * 14 12 11 16 16 Si 1.86806 * 120.00021 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47090 * 90.00080 * 16 14 12 18 18 H 1.48496 * 109.46946 * 210.00124 * 16 14 12 19 19 H 1.48497 * 109.46905 * 329.99968 * 16 14 12 20 20 H 1.08996 * 109.47248 * 59.99950 * 1 2 3 21 21 H 1.08996 * 109.47200 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46932 * 300.00300 * 1 2 3 23 23 H 1.08001 * 120.00295 * 59.99474 * 4 2 1 24 24 H 0.97001 * 119.99794 * 359.97438 * 6 5 4 25 25 H 1.09004 * 109.46963 * 299.72100 * 7 6 5 26 26 H 1.08994 * 109.47567 * 59.72252 * 7 6 5 27 27 H 1.09003 * 115.55353 * 29.32634 * 8 7 6 28 28 H 1.09000 * 117.49570 * 0.02562 * 9 8 7 29 29 H 1.09002 * 117.50143 * 145.01658 * 9 8 7 30 30 H 1.09004 * 117.49500 * 214.97595 * 10 8 7 31 31 H 1.08998 * 117.50079 * 0.02562 * 10 8 7 32 32 H 1.08997 * 109.47243 * 185.00069 * 11 2 1 33 33 H 1.08999 * 109.47233 * 305.00667 * 11 2 1 34 34 H 0.97003 * 120.00198 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 2.7683 -0.0882 2.0731 6 7 3.2357 -0.7488 3.2168 7 6 4.0730 -0.0350 4.1841 8 6 4.4385 -0.9756 5.3342 9 6 3.9261 -0.6166 6.7305 10 6 5.4095 -0.4515 6.3940 11 6 2.0400 -0.7214 -1.2492 12 6 1.6413 0.0569 -2.4765 13 1 1.0800 0.9740 -2.3757 14 6 1.9932 -0.4019 -3.7282 15 7 1.6449 0.2770 -4.7993 16 14 2.9635 -1.9887 -3.9026 17 1 2.0242 -3.1329 -4.0199 18 1 3.8125 -1.9185 -5.1190 19 1 3.8251 -2.1759 -2.7077 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.7714 -1.7443 1.4015 24 1 3.0013 -1.6775 3.3703 25 1 4.9831 0.3089 3.6928 26 1 3.5254 0.8221 4.5759 27 1 4.4980 -2.0329 5.0760 28 1 3.3282 0.2894 6.8296 29 1 3.6482 -1.4379 7.3911 30 1 6.1075 -1.1642 6.8334 31 1 5.7876 0.5635 6.2723 32 1 3.1263 -0.7996 -1.2055 33 1 1.6053 -1.7198 -1.2951 34 1 1.8927 -0.0456 -5.6799 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308278665.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:41 Heat of formation + Delta-G solvation = 30.852640 kcal Electronic energy + Delta-G solvation = -13113.373337 eV Core-core repulsion = 10853.709761 eV Total energy + Delta-G solvation = -2259.663576 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.99729 -38.11044 -36.18785 -34.28118 -32.18974 -29.39660 -26.91683 -25.16591 -23.26331 -22.69968 -21.81427 -20.44531 -18.92596 -17.82647 -17.13388 -16.24719 -15.76071 -15.08909 -15.06017 -14.91101 -14.67946 -14.28738 -13.74816 -13.15450 -12.84939 -12.58761 -12.46779 -12.41237 -12.30307 -11.80136 -11.64951 -11.47497 -11.35177 -11.22226 -10.95725 -10.75347 -10.70034 -8.79766 -8.22395 -6.24676 1.38584 1.40983 1.45136 1.52594 2.01678 2.41060 2.88417 3.12977 3.73064 3.96108 4.04810 4.10740 4.17870 4.33070 4.54559 4.57926 4.64570 4.78450 4.80228 4.98082 5.01068 5.08457 5.21171 5.22795 5.24923 5.41109 5.46194 5.54403 5.71976 5.75815 6.35746 6.36761 6.82426 7.38669 7.63705 8.94117 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.049622 B = 0.005035 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.125829 B = 5559.514687 C = 5886.882934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.020 4.020 3 H 0.056 0.944 4 C 0.051 3.949 5 N -0.271 5.271 6 N -0.675 5.675 7 C 0.192 3.808 8 C -0.176 4.176 9 C -0.174 4.174 10 C -0.162 4.162 11 C 0.002 3.998 12 C -0.518 4.518 13 H 0.040 0.960 14 C 0.004 3.996 15 N -0.953 5.953 16 Si 0.946 3.054 17 H -0.263 1.263 18 H -0.288 1.288 19 H -0.253 1.253 20 H 0.047 0.953 21 H 0.063 0.937 22 H 0.057 0.943 23 H 0.114 0.886 24 H 0.380 0.620 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.112 0.888 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.009 0.991 33 H 0.028 0.972 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.647 -5.719 21.554 22.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.041 4.041 3 H 0.074 0.926 4 C -0.165 4.165 5 N -0.075 5.075 6 N -0.415 5.415 7 C 0.068 3.932 8 C -0.195 4.195 9 C -0.211 4.211 10 C -0.200 4.200 11 C -0.037 4.037 12 C -0.556 4.556 13 H 0.059 0.941 14 C -0.192 4.192 15 N -0.594 5.594 16 Si 0.770 3.230 17 H -0.187 1.187 18 H -0.214 1.214 19 H -0.177 1.177 20 H 0.066 0.934 21 H 0.082 0.918 22 H 0.076 0.924 23 H 0.131 0.869 24 H 0.218 0.782 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.130 0.870 28 H 0.113 0.887 29 H 0.124 0.876 30 H 0.129 0.871 31 H 0.118 0.882 32 H 0.028 0.972 33 H 0.046 0.954 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.224 -4.718 21.737 22.849 hybrid contribution -0.070 -1.462 -0.741 1.641 sum 5.154 -6.181 20.996 22.486 Atomic orbital electron populations 1.21585 0.93335 1.02144 1.00921 1.19740 0.96437 0.98216 0.89685 0.92557 1.25706 0.97234 0.98405 0.95107 1.73528 1.09481 1.28004 0.96501 1.48019 1.59834 1.12729 1.20885 1.20490 0.92469 0.93643 0.86604 1.22329 1.07223 0.99976 0.89985 1.23150 0.97203 1.03784 0.96915 1.23054 0.92977 1.03199 1.00743 1.19498 0.95710 0.96113 0.92363 1.21419 1.34399 1.08855 0.90945 0.94146 1.25931 0.96900 1.00837 0.95520 1.70062 1.49027 1.41602 0.98696 0.85723 0.79415 0.79931 0.77965 1.18749 1.21365 1.17674 0.93380 0.91844 0.92402 0.86892 0.78194 0.93529 0.93251 0.87013 0.88712 0.87565 0.87136 0.88175 0.97218 0.95381 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.37 8.99 71.98 0.65 -3.72 16 2 C -0.02 -0.79 2.75 -11.54 -0.03 -0.82 16 3 H 0.06 2.46 8.11 -2.39 -0.02 2.44 16 4 C 0.05 1.76 9.66 88.67 0.86 2.62 16 5 N -0.27 -9.43 11.38 -50.46 -0.57 -10.00 16 6 N -0.67 -18.66 6.62 -187.50 -1.24 -19.91 16 7 C 0.19 4.41 6.95 86.38 0.60 5.01 16 8 C -0.18 -2.90 5.85 -10.79 -0.06 -2.96 16 9 C -0.17 -2.35 10.18 30.60 0.31 -2.04 16 10 C -0.16 -2.09 10.25 30.59 0.31 -1.78 16 11 C 0.00 0.08 3.50 29.85 0.10 0.19 16 12 C -0.52 -29.67 8.96 25.60 0.23 -29.44 16 13 H 0.04 2.53 7.30 -2.91 -0.02 2.51 16 14 C 0.00 0.26 5.47 84.65 0.46 0.72 16 15 N -0.95 -60.04 13.96 21.45 0.30 -59.74 16 16 Si 0.95 44.61 27.47 68.60 1.88 46.49 16 17 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 18 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 19 H -0.25 -11.29 6.54 99.48 0.65 -10.64 16 20 H 0.05 1.96 6.95 -2.39 -0.02 1.94 16 21 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 22 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 23 H 0.11 3.31 8.00 -2.91 -0.02 3.28 16 24 H 0.38 9.00 8.34 -213.31 -1.78 7.22 16 25 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 26 H 0.05 1.17 7.87 -2.39 -0.02 1.15 16 27 H 0.11 1.74 8.04 -2.39 -0.02 1.72 16 28 H 0.09 1.33 8.03 -2.39 -0.02 1.31 16 29 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.01 0.46 7.20 -2.39 -0.02 0.44 16 33 H 0.03 1.24 7.57 -2.39 -0.02 1.22 16 34 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -66.27 287.30 3.02 -63.24 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -0.77 Total: 12.14 kcal Atomic # 6 Polarization: -35.65 SS G_CDS: 3.43 Total: -32.22 kcal Atomic # 7 Polarization: -88.13 SS G_CDS: -1.52 Total: -89.65 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.49 kcal Total: -66.27 3.02 -63.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308278665.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.097 kcal (2) G-P(sol) polarization free energy of solvation -66.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds