Wall clock time and date at job start Mon Mar 30 2020 03:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 N 1.28011 * 119.99799 * 119.99757 * 4 2 1 6 6 N 1.40107 * 119.99881 * 180.02562 * 5 4 2 7 7 C 1.46498 * 120.00053 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.46823 * 180.02562 * 7 6 5 9 9 C 1.53003 * 117.50096 * 243.62099 * 8 7 6 10 10 C 1.53002 * 60.00062 * 252.51234 * 9 8 7 11 11 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 12 12 C 1.50704 * 109.47137 * 295.00578 * 11 2 1 13 13 H 1.07991 * 120.00119 * 359.97438 * 12 11 2 14 14 C 1.37875 * 119.99876 * 179.97438 * 12 11 2 15 15 N 1.31514 * 120.00009 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 120.00139 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.46942 * 90.00357 * 16 14 12 18 18 H 1.48500 * 109.47201 * 210.00165 * 16 14 12 19 19 H 1.48497 * 109.47273 * 330.00530 * 16 14 12 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 23 23 H 1.08002 * 119.99868 * 300.00314 * 4 2 1 24 24 H 0.97001 * 119.99809 * 0.02562 * 6 5 4 25 25 H 1.08992 * 109.47326 * 300.00266 * 7 6 5 26 26 H 1.08999 * 109.47229 * 60.00310 * 7 6 5 27 27 H 1.09001 * 115.55404 * 29.33637 * 8 7 6 28 28 H 1.09003 * 117.49702 * 0.02562 * 9 8 7 29 29 H 1.08997 * 117.50097 * 145.02052 * 9 8 7 30 30 H 1.09000 * 117.50034 * 252.50102 * 10 9 8 31 31 H 1.08999 * 117.49497 * 107.48752 * 10 9 8 32 32 H 1.09006 * 109.47194 * 55.00274 * 11 2 1 33 33 H 1.08997 * 109.47756 * 174.99755 * 11 2 1 34 34 H 0.97002 * 119.99910 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 2.7683 -0.0883 -2.0730 6 7 3.2350 -0.7486 -3.2172 7 6 4.0767 -0.0365 -4.1818 8 6 4.4455 -0.9783 -5.3298 9 6 5.9249 -1.3224 -5.5139 10 6 5.2279 -0.3877 -6.5045 11 6 2.0400 -0.7212 1.2493 12 6 1.6412 0.0572 2.4766 13 1 1.0805 0.9746 2.3757 14 6 1.9923 -0.4021 3.7283 15 7 1.6447 0.2774 4.7994 16 14 2.9616 -1.9894 3.9030 17 1 4.4152 -1.6869 3.8790 18 1 2.6132 -2.6431 5.1901 19 1 2.6269 -2.9000 2.7788 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 1.7715 -1.7444 -1.4013 24 1 3.0001 -1.6771 -3.3710 25 1 3.5316 0.8208 -4.5765 26 1 4.9853 0.3071 -3.6872 27 1 3.7159 -1.7570 -5.5518 28 1 6.6355 -0.8781 -4.8168 29 1 6.1689 -2.3278 -5.8568 30 1 5.0134 -0.7781 -7.4993 31 1 5.4800 0.6718 -6.4594 32 1 1.6054 -1.7198 1.2952 33 1 3.1263 -0.7995 1.2057 34 1 1.8920 -0.0456 5.6800 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308278666.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:44 Heat of formation + Delta-G solvation = 30.870789 kcal Electronic energy + Delta-G solvation = -13121.813506 eV Core-core repulsion = 10862.150717 eV Total energy + Delta-G solvation = -2259.662789 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.99695 -38.11013 -36.18751 -34.28101 -32.18973 -29.39550 -26.91717 -25.16680 -23.26598 -22.69963 -21.81414 -20.44800 -18.92739 -17.81924 -17.13746 -16.24166 -15.70964 -15.26958 -15.07200 -14.74259 -14.66584 -14.26172 -13.82950 -13.21857 -12.86902 -12.52647 -12.42222 -12.35647 -12.33338 -11.83757 -11.62724 -11.50176 -11.35129 -11.22165 -10.95741 -10.75326 -10.70096 -8.79699 -8.22463 -6.24728 1.39566 1.39875 1.45120 1.52094 2.01715 2.40902 2.88255 3.12980 3.72951 3.95695 4.04854 4.10838 4.17977 4.33361 4.54351 4.58224 4.64409 4.78312 4.79756 4.98157 5.00966 5.09139 5.21197 5.23090 5.24828 5.40033 5.46576 5.54058 5.72621 5.75627 6.35794 6.36742 6.82395 7.38586 7.63752 8.94033 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.044058 B = 0.005194 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.378364 B = 5389.342199 C = 5794.264042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.020 4.020 3 H 0.056 0.944 4 C 0.052 3.948 5 N -0.270 5.270 6 N -0.675 5.675 7 C 0.192 3.808 8 C -0.174 4.174 9 C -0.179 4.179 10 C -0.159 4.159 11 C 0.002 3.998 12 C -0.518 4.518 13 H 0.040 0.960 14 C 0.004 3.996 15 N -0.953 5.953 16 Si 0.945 3.055 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.244 1.244 20 H 0.062 0.938 21 H 0.057 0.943 22 H 0.047 0.953 23 H 0.114 0.886 24 H 0.380 0.620 25 H 0.052 0.948 26 H 0.044 0.956 27 H 0.114 0.886 28 H 0.091 0.909 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.100 0.900 32 H 0.029 0.971 33 H 0.008 0.992 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.232 -5.956 -21.224 22.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.041 4.041 3 H 0.075 0.925 4 C -0.164 4.164 5 N -0.075 5.075 6 N -0.415 5.415 7 C 0.068 3.932 8 C -0.193 4.193 9 C -0.216 4.216 10 C -0.197 4.197 11 C -0.037 4.037 12 C -0.556 4.556 13 H 0.059 0.941 14 C -0.192 4.192 15 N -0.594 5.594 16 Si 0.769 3.231 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.167 1.167 20 H 0.081 0.919 21 H 0.076 0.924 22 H 0.066 0.934 23 H 0.131 0.869 24 H 0.218 0.782 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.132 0.868 28 H 0.110 0.890 29 H 0.124 0.876 30 H 0.130 0.870 31 H 0.118 0.882 32 H 0.048 0.952 33 H 0.027 0.973 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.807 -4.959 -21.408 22.729 hybrid contribution -0.031 -1.442 0.756 1.628 sum 5.776 -6.401 -20.652 22.379 Atomic orbital electron populations 1.21582 0.93336 1.02126 1.00933 1.19738 0.96450 0.98214 0.89683 0.92549 1.25701 0.97263 0.98382 0.95098 1.73530 1.09482 1.27982 0.96491 1.48019 1.59598 1.12802 1.21042 1.20492 0.92505 0.93801 0.86431 1.22336 0.96106 1.02779 0.98110 1.23151 0.93888 1.01471 1.03075 1.23052 1.02173 0.99869 0.94569 1.19504 0.95552 0.96291 0.92355 1.21419 1.34469 1.08763 0.90943 0.94140 1.25930 0.96939 1.00788 0.95530 1.70063 1.49086 1.41536 0.98706 0.85742 0.78966 0.80257 0.78176 1.19960 1.21042 1.16717 0.91880 0.92369 0.93382 0.86932 0.78190 0.92992 0.93770 0.86782 0.89041 0.87625 0.86960 0.88151 0.95229 0.97346 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.36 8.99 71.98 0.65 -3.72 16 2 C -0.02 -0.79 2.75 -11.54 -0.03 -0.82 16 3 H 0.06 2.46 8.11 -2.39 -0.02 2.44 16 4 C 0.05 1.76 9.66 88.66 0.86 2.62 16 5 N -0.27 -9.39 11.38 -50.46 -0.57 -9.96 16 6 N -0.67 -18.59 6.62 -187.51 -1.24 -19.83 16 7 C 0.19 4.39 6.95 86.38 0.60 4.99 16 8 C -0.17 -2.85 5.85 -10.79 -0.06 -2.91 16 9 C -0.18 -2.57 10.18 30.60 0.31 -2.26 16 10 C -0.16 -2.03 10.25 30.60 0.31 -1.71 16 11 C 0.00 0.07 3.50 29.85 0.10 0.18 16 12 C -0.52 -29.65 8.96 25.60 0.23 -29.42 16 13 H 0.04 2.53 7.30 -2.92 -0.02 2.51 16 14 C 0.00 0.26 5.47 84.65 0.46 0.72 16 15 N -0.95 -60.07 13.96 21.45 0.30 -59.77 16 16 Si 0.94 44.59 27.47 68.60 1.88 46.47 16 17 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 18 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 19 H -0.24 -10.55 6.54 99.48 0.65 -9.90 16 20 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 21 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 22 H 0.05 1.96 6.95 -2.38 -0.02 1.94 16 23 H 0.11 3.30 8.00 -2.91 -0.02 3.28 16 24 H 0.38 8.96 8.34 -213.31 -1.78 7.18 16 25 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.04 1.09 7.88 -2.39 -0.02 1.07 16 27 H 0.11 1.71 8.04 -2.39 -0.02 1.69 16 28 H 0.09 1.42 8.03 -2.39 -0.02 1.40 16 29 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.03 1.32 7.20 -2.38 -0.02 1.30 16 33 H 0.01 0.39 7.57 -2.39 -0.02 0.37 16 34 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -66.20 287.30 3.02 -63.18 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -0.77 Total: 12.25 kcal Atomic # 6 Polarization: -35.77 SS G_CDS: 3.43 Total: -32.34 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -1.52 Total: -89.56 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.88 Total: 46.47 kcal Total: -66.20 3.02 -63.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308278666.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.051 kcal (2) G-P(sol) polarization free energy of solvation -66.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds