Wall clock time and date at job start Mon Mar 30 2020 03:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47711 * 2 1 4 4 C 1.50697 * 109.47323 * 239.99128 * 2 1 3 5 5 H 1.08002 * 120.00599 * 240.00782 * 4 2 1 6 6 C 1.37880 * 119.99675 * 60.00315 * 4 2 1 7 7 N 1.31517 * 120.00210 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00019 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.46845 * 269.99914 * 8 6 4 10 10 H 1.48503 * 109.47399 * 29.99403 * 8 6 4 11 11 H 1.48498 * 109.47295 * 150.00010 * 8 6 4 12 12 N 1.46506 * 109.46817 * 119.99917 * 2 1 3 13 13 N 1.40105 * 119.99836 * 270.00080 * 12 2 1 14 14 C 1.28008 * 120.00145 * 179.97438 * 13 12 2 15 15 C 1.51404 * 136.31568 * 359.63037 * 14 13 12 16 16 C 1.53967 * 87.30342 * 154.04405 * 15 14 13 17 17 H 1.08999 * 114.04942 * 271.65343 * 16 15 14 18 18 C 1.52999 * 113.79372 * 140.00634 * 16 15 14 19 19 C 1.51404 * 136.31963 * 179.97438 * 14 13 12 20 20 H 1.08994 * 113.55900 * 91.36946 * 19 14 13 21 21 C 1.53004 * 113.55724 * 320.71629 * 19 14 13 22 22 H 1.08998 * 109.47206 * 300.00454 * 1 2 3 23 23 H 1.09006 * 109.46667 * 60.00472 * 1 2 3 24 24 H 1.09000 * 109.47280 * 180.02562 * 1 2 3 25 25 H 0.96998 * 119.99640 * 180.02562 * 7 6 4 26 26 H 0.96996 * 120.00307 * 89.99069 * 12 2 1 27 27 H 1.09004 * 113.56021 * 268.62594 * 15 14 13 28 28 H 1.09008 * 113.55974 * 39.35634 * 15 14 13 29 29 H 1.08995 * 109.47526 * 324.01167 * 18 16 15 30 30 H 1.09007 * 109.47086 * 84.01125 * 18 16 15 31 31 H 1.09006 * 109.46831 * 204.01095 * 18 16 15 32 32 H 1.08996 * 109.47444 * 79.50460 * 21 19 14 33 33 H 1.09004 * 109.47017 * 199.50212 * 21 19 14 34 34 H 1.08996 * 109.47161 * 319.50077 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 2.1381 -0.8594 -3.5564 8 14 0.6260 1.2796 -2.6542 9 1 -0.8019 0.8743 -2.6994 10 1 0.8492 2.1772 -1.4924 11 1 0.9773 1.9950 -3.9072 12 7 2.0183 -0.6906 1.1963 13 7 2.2517 0.0300 2.3749 14 6 2.6779 -0.5735 3.4203 15 6 3.0358 -1.9964 3.7936 16 6 3.9777 -1.4033 4.8575 17 1 4.9832 -1.1932 4.4930 18 6 3.9695 -2.1664 6.1835 19 6 3.0430 -0.1840 4.8370 20 1 2.2118 -0.2603 5.5378 21 6 3.7788 1.1541 4.9330 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 1.9041 -0.5278 -4.4374 26 1 2.1798 -1.6468 1.1723 27 1 2.2026 -2.5592 4.2145 28 1 3.5552 -2.5371 3.0022 29 1 2.9620 -2.5283 6.3884 30 1 4.6536 -3.0127 6.1199 31 1 4.2873 -1.5019 6.9871 32 1 3.0592 1.9701 4.8660 33 1 4.3055 1.2116 5.8856 34 1 4.4958 1.2340 4.1160 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378871141.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:53 Heat of formation + Delta-G solvation = 53.408520 kcal Electronic energy + Delta-G solvation = -13750.447963 eV Core-core repulsion = 11491.762483 eV Total energy + Delta-G solvation = -2258.685480 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.23058 -35.92984 -33.42821 -31.42230 -30.21996 -28.58643 -26.80248 -25.03359 -22.77006 -20.99402 -20.25210 -18.61797 -16.71330 -15.64413 -15.26119 -14.72910 -14.26453 -13.67407 -13.39723 -13.06153 -12.90210 -12.50204 -12.18514 -12.14025 -11.85402 -11.56118 -11.45606 -11.17467 -10.83640 -10.50634 -10.39017 -10.13733 -10.06171 -9.59880 -9.24502 -8.96895 -8.66594 -6.97689 -6.16952 -4.18382 2.90743 3.24436 3.35340 3.38150 3.61836 4.33417 4.56690 4.71968 5.08159 5.17460 5.34830 5.44070 5.51655 5.57349 5.59678 5.74891 5.91540 5.96410 6.04296 6.08677 6.17919 6.32189 6.35852 6.46615 6.56600 6.63772 6.83680 7.15036 7.46208 7.61781 8.11335 8.48972 8.84439 9.36623 9.46103 10.95765 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.054014 B = 0.006555 C = 0.006254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.263914 B = 4270.606766 C = 4475.992135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.274 3.726 3 H 0.039 0.961 4 C -0.530 4.530 5 H 0.077 0.923 6 C 0.076 3.924 7 N -0.895 5.895 8 Si 0.890 3.110 9 H -0.277 1.277 10 H -0.264 1.264 11 H -0.295 1.295 12 N -0.632 5.632 13 N -0.191 5.191 14 C -0.024 4.024 15 C -0.118 4.118 16 C -0.103 4.103 17 H 0.092 0.908 18 C -0.138 4.138 19 C -0.026 4.026 20 H 0.095 0.905 21 C -0.139 4.139 22 H 0.032 0.968 23 H 0.045 0.955 24 H 0.051 0.949 25 H 0.267 0.733 26 H 0.374 0.626 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.408 0.001 16.564 16.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.170 3.830 3 H 0.057 0.943 4 C -0.569 4.569 5 H 0.095 0.905 6 C -0.127 4.127 7 N -0.533 5.533 8 Si 0.719 3.281 9 H -0.204 1.204 10 H -0.189 1.189 11 H -0.222 1.222 12 N -0.368 5.368 13 N 0.003 4.997 14 C -0.220 4.220 15 C -0.159 4.159 16 C -0.122 4.122 17 H 0.111 0.889 18 C -0.196 4.196 19 C -0.047 4.047 20 H 0.113 0.887 21 C -0.197 4.197 22 H 0.051 0.949 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.210 0.790 27 H 0.105 0.895 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.062 1.026 15.793 15.862 hybrid contribution -0.424 -0.483 -0.239 0.686 sum 0.638 0.543 15.554 15.577 Atomic orbital electron populations 1.22589 1.00225 1.00733 0.98714 1.18780 0.89005 0.94040 0.81201 0.94342 1.21093 1.32842 1.14420 0.88559 0.90480 1.24833 0.95618 0.96801 0.95425 1.69877 1.45155 1.40223 0.97997 0.86822 0.80490 0.83496 0.77242 1.20365 1.18879 1.22212 1.48258 1.74772 1.07702 1.06053 1.73114 1.06437 1.26622 0.93557 1.25098 1.06037 0.95440 0.95377 1.22584 0.98968 0.95695 0.98608 1.22352 0.98242 0.96151 0.95444 0.88935 1.21687 1.01733 0.99762 0.96387 1.21609 0.97256 0.94795 0.91072 0.88658 1.21680 1.00358 0.96468 1.01214 0.94876 0.93696 0.93036 0.92342 0.78972 0.89517 0.91508 0.92614 0.92687 0.92552 0.92435 0.92792 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.76 9.00 37.16 0.33 -3.43 16 2 C 0.27 6.83 2.82 -69.08 -0.20 6.64 16 3 H 0.04 1.02 7.20 -51.93 -0.37 0.64 16 4 C -0.53 -15.00 9.32 -34.44 -0.32 -15.32 16 5 H 0.08 2.34 8.03 -52.49 -0.42 1.92 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.10 16 7 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 8 Si 0.89 21.98 24.37 -169.99 -4.14 17.83 16 9 H -0.28 -6.62 6.87 56.52 0.39 -6.24 16 10 H -0.26 -6.35 6.53 56.52 0.37 -5.98 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 N -0.63 -14.17 6.09 -5.88 -0.04 -14.21 16 13 N -0.19 -3.92 11.50 35.93 0.41 -3.51 16 14 C -0.02 -0.39 7.93 -78.23 -0.62 -1.01 16 15 C -0.12 -1.60 7.22 -27.25 -0.20 -1.80 16 16 C -0.10 -1.16 4.00 -89.79 -0.36 -1.52 16 17 H 0.09 1.07 8.11 -51.93 -0.42 0.65 16 18 C -0.14 -1.22 9.74 37.16 0.36 -0.85 16 19 C -0.03 -0.33 3.82 -91.31 -0.35 -0.68 16 20 H 0.10 1.07 8.10 -51.93 -0.42 0.65 16 21 C -0.14 -1.66 9.68 37.16 0.36 -1.30 16 22 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.04 1.05 3.27 -51.93 -0.17 0.88 16 24 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 26 H 0.37 8.04 8.34 -182.60 -1.52 6.52 16 27 H 0.09 1.07 7.95 -51.93 -0.41 0.66 16 28 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 29 H 0.05 0.47 7.92 -51.93 -0.41 0.06 16 30 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 LS Contribution 277.74 15.07 4.19 4.19 Total: -1.00 -30.20 277.74 -6.60 -36.80 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -6.71 Total: 2.44 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -1.08 Total: -17.18 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: 1.15 Total: -44.08 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.14 Total: 17.83 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.20 -6.60 -36.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378871141.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.211 kcal (2) G-P(sol) polarization free energy of solvation -30.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds