Wall clock time and date at job start Mon Mar 30 2020 03:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47711 * 2 1 4 4 C 1.50697 * 109.47323 * 239.99128 * 2 1 3 5 5 H 1.08002 * 120.00599 * 240.00782 * 4 2 1 6 6 C 1.37880 * 119.99675 * 60.00315 * 4 2 1 7 7 N 1.31517 * 120.00210 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00019 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.46845 * 269.99914 * 8 6 4 10 10 H 1.48503 * 109.47399 * 29.99403 * 8 6 4 11 11 H 1.48498 * 109.47295 * 150.00010 * 8 6 4 12 12 N 1.46506 * 109.46817 * 119.99917 * 2 1 3 13 13 N 1.40105 * 119.99836 * 270.00080 * 12 2 1 14 14 C 1.28008 * 120.00145 * 179.97438 * 13 12 2 15 15 C 1.51404 * 136.31568 * 359.63037 * 14 13 12 16 16 C 1.53967 * 87.30342 * 154.04405 * 15 14 13 17 17 H 1.08999 * 114.04942 * 271.65343 * 16 15 14 18 18 C 1.52999 * 113.79372 * 140.00634 * 16 15 14 19 19 C 1.51404 * 136.31963 * 179.97438 * 14 13 12 20 20 H 1.08994 * 113.55900 * 91.36946 * 19 14 13 21 21 C 1.53004 * 113.55724 * 320.71629 * 19 14 13 22 22 H 1.08998 * 109.47206 * 300.00454 * 1 2 3 23 23 H 1.09006 * 109.46667 * 60.00472 * 1 2 3 24 24 H 1.09000 * 109.47280 * 180.02562 * 1 2 3 25 25 H 0.96998 * 119.99640 * 180.02562 * 7 6 4 26 26 H 0.96996 * 120.00307 * 89.99069 * 12 2 1 27 27 H 1.09004 * 113.56021 * 268.62594 * 15 14 13 28 28 H 1.09008 * 113.55974 * 39.35634 * 15 14 13 29 29 H 1.08995 * 109.47526 * 324.01167 * 18 16 15 30 30 H 1.09007 * 109.47086 * 84.01125 * 18 16 15 31 31 H 1.09006 * 109.46831 * 204.01095 * 18 16 15 32 32 H 1.08996 * 109.47444 * 79.50460 * 21 19 14 33 33 H 1.09004 * 109.47017 * 199.50212 * 21 19 14 34 34 H 1.08996 * 109.47161 * 319.50077 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 2.1381 -0.8594 -3.5564 8 14 0.6260 1.2796 -2.6542 9 1 -0.8019 0.8743 -2.6994 10 1 0.8492 2.1772 -1.4924 11 1 0.9773 1.9950 -3.9072 12 7 2.0183 -0.6906 1.1963 13 7 2.2517 0.0300 2.3749 14 6 2.6779 -0.5735 3.4203 15 6 3.0358 -1.9964 3.7936 16 6 3.9777 -1.4033 4.8575 17 1 4.9832 -1.1932 4.4930 18 6 3.9695 -2.1664 6.1835 19 6 3.0430 -0.1840 4.8370 20 1 2.2118 -0.2603 5.5378 21 6 3.7788 1.1541 4.9330 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 1.9041 -0.5278 -4.4374 26 1 2.1798 -1.6468 1.1723 27 1 2.2026 -2.5592 4.2145 28 1 3.5552 -2.5371 3.0022 29 1 2.9620 -2.5283 6.3884 30 1 4.6536 -3.0127 6.1199 31 1 4.2873 -1.5019 6.9871 32 1 3.0592 1.9701 4.8660 33 1 4.3055 1.2116 5.8856 34 1 4.4958 1.2340 4.1160 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378871141.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:53 Heat of formation + Delta-G solvation = 33.415298 kcal Electronic energy + Delta-G solvation = -13751.314934 eV Core-core repulsion = 11491.762483 eV Total energy + Delta-G solvation = -2259.552451 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.37546 -37.62769 -35.23576 -33.36268 -31.19748 -29.81669 -28.19233 -27.13475 -23.85567 -22.45382 -21.73982 -20.06094 -18.60522 -17.30540 -16.94612 -15.79798 -15.72340 -15.04514 -14.92597 -14.63047 -14.12100 -14.08255 -13.80765 -13.36655 -13.25314 -12.84691 -12.74236 -12.49555 -12.38991 -12.08992 -11.72179 -11.63607 -11.45670 -11.28133 -11.10624 -10.82594 -10.35688 -8.61885 -8.38606 -6.45591 1.28568 1.35115 1.45972 1.54623 2.09246 2.26486 2.96854 3.52889 3.63569 4.09724 4.16617 4.39713 4.48503 4.53095 4.60614 4.63236 4.65424 4.74378 4.87817 4.94350 4.95577 5.08556 5.15970 5.22445 5.28880 5.37991 5.43948 5.49652 5.63937 5.89852 6.15259 6.51114 6.64351 7.21640 7.85390 8.77586 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.054014 B = 0.006555 C = 0.006254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.263914 B = 4270.606766 C = 4475.992135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.282 3.718 3 H 0.022 0.978 4 C -0.537 4.537 5 H 0.038 0.962 6 C 0.023 3.977 7 N -0.940 5.940 8 Si 0.952 3.048 9 H -0.259 1.259 10 H -0.254 1.254 11 H -0.291 1.291 12 N -0.651 5.651 13 N -0.238 5.238 14 C -0.014 4.014 15 C -0.123 4.123 16 C -0.088 4.088 17 H 0.089 0.911 18 C -0.133 4.133 19 C -0.021 4.021 20 H 0.121 0.879 21 C -0.138 4.138 22 H 0.050 0.950 23 H 0.043 0.957 24 H 0.052 0.948 25 H 0.271 0.729 26 H 0.370 0.630 27 H 0.107 0.893 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.084 0.916 34 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.768 0.675 19.305 19.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.177 3.823 3 H 0.040 0.960 4 C -0.576 4.576 5 H 0.056 0.944 6 C -0.176 4.176 7 N -0.579 5.579 8 Si 0.778 3.222 9 H -0.184 1.184 10 H -0.178 1.178 11 H -0.218 1.218 12 N -0.387 5.387 13 N -0.043 5.043 14 C -0.211 4.211 15 C -0.163 4.163 16 C -0.108 4.108 17 H 0.107 0.893 18 C -0.190 4.190 19 C -0.042 4.042 20 H 0.139 0.861 21 C -0.196 4.196 22 H 0.069 0.931 23 H 0.061 0.939 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.207 0.793 27 H 0.125 0.875 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.424 1.696 18.560 18.642 hybrid contribution -0.069 -0.804 -0.910 1.216 sum 0.355 0.892 17.650 17.676 Atomic orbital electron populations 1.22451 0.98474 1.01062 0.99408 1.18428 0.90251 0.92585 0.81038 0.96045 1.21322 1.32250 1.13426 0.90607 0.94360 1.25695 0.96998 1.00010 0.94882 1.70008 1.46920 1.42277 0.98721 0.85814 0.79325 0.79580 0.77502 1.18439 1.17794 1.21811 1.47948 1.76749 1.07342 1.06662 1.73190 1.10218 1.26996 0.93887 1.26249 1.00836 0.98079 0.95899 1.22781 1.00261 0.94067 0.99230 1.22300 0.97214 0.95141 0.96125 0.89314 1.21665 1.02585 0.99950 0.94832 1.21869 0.98286 0.95793 0.88270 0.86121 1.21669 0.99972 0.95820 1.02112 0.93080 0.93861 0.92930 0.91997 0.79327 0.87516 0.92790 0.91833 0.91995 0.90850 0.92833 0.89691 0.94380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.00 9.00 71.98 0.65 -6.35 16 2 C 0.28 14.31 2.82 44.24 0.12 14.43 16 3 H 0.02 1.16 7.20 -2.39 -0.02 1.14 16 4 C -0.54 -31.50 9.32 25.60 0.24 -31.26 16 5 H 0.04 2.46 8.03 -2.91 -0.02 2.44 16 6 C 0.02 1.36 5.45 84.65 0.46 1.82 16 7 N -0.94 -58.60 13.96 21.45 0.30 -58.30 16 8 Si 0.95 45.30 24.37 68.60 1.67 46.97 16 9 H -0.26 -11.53 6.87 99.48 0.68 -10.84 16 10 H -0.25 -11.59 6.53 99.48 0.65 -10.94 16 11 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 12 N -0.65 -29.91 6.09 -172.52 -1.05 -30.96 16 13 N -0.24 -9.81 11.50 -40.14 -0.46 -10.27 16 14 C -0.01 -0.45 7.93 46.97 0.37 -0.08 16 15 C -0.12 -3.13 7.22 30.26 0.22 -2.91 16 16 C -0.09 -1.73 4.00 -10.26 -0.04 -1.78 16 17 H 0.09 1.84 8.11 -2.39 -0.02 1.82 16 18 C -0.13 -1.78 9.74 71.98 0.70 -1.08 16 19 C -0.02 -0.47 3.82 -11.24 -0.04 -0.52 16 20 H 0.12 2.18 8.10 -2.39 -0.02 2.17 16 21 C -0.14 -2.93 9.68 71.98 0.70 -2.23 16 22 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 23 H 0.04 1.94 3.27 -2.38 -0.01 1.93 16 24 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 26 H 0.37 16.61 8.34 -213.32 -1.78 14.83 16 27 H 0.11 2.36 7.95 -2.38 -0.02 2.34 16 28 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 29 H 0.06 0.78 7.92 -2.39 -0.02 0.76 16 30 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.04 0.95 8.09 -2.39 -0.02 0.93 16 Total: -1.00 -67.09 277.74 3.05 -64.05 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -0.79 Total: 18.46 kcal Atomic # 6 Polarization: -33.33 SS G_CDS: 3.38 Total: -29.95 kcal Atomic # 7 Polarization: -98.31 SS G_CDS: -1.21 Total: -99.52 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.67 Total: 46.97 kcal Total: -67.09 3.05 -64.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378871141.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.461 kcal (2) G-P(sol) polarization free energy of solvation -67.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds