Wall clock time and date at job start Mon Mar 30 2020 02:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50705 * 109.46925 * 2 1 4 4 N 1.28007 * 120.00163 * 90.00171 * 3 2 1 5 5 N 1.40105 * 119.99905 * 359.97438 * 4 3 2 6 6 C 1.46500 * 119.99963 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.47175 * 30.00242 * 6 5 4 8 8 C 1.53006 * 109.46998 * 270.00373 * 6 5 4 9 9 C 1.50697 * 109.46896 * 150.00444 * 6 5 4 10 10 H 1.07994 * 120.00496 * 359.97438 * 9 6 5 11 11 C 1.37878 * 119.99687 * 179.97438 * 9 6 5 12 12 N 1.31518 * 120.00216 * 0.02562 * 11 9 6 13 13 Si 1.86797 * 120.00016 * 179.97438 * 11 9 6 14 14 H 1.48500 * 109.47172 * 0.02562 * 13 11 9 15 15 H 1.48493 * 109.47304 * 120.00302 * 13 11 9 16 16 H 1.48502 * 109.47432 * 240.00422 * 13 11 9 17 17 C 1.50704 * 119.99838 * 269.99796 * 3 2 1 18 18 C 1.53005 * 117.49868 * 243.62444 * 17 3 2 19 19 C 1.53000 * 117.49764 * 175.00368 * 17 3 2 20 20 H 1.09001 * 109.47194 * 60.00252 * 1 2 3 21 21 H 1.09004 * 109.47478 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47178 * 299.99999 * 1 2 3 23 23 H 1.09002 * 109.47178 * 240.00001 * 2 1 3 24 24 H 1.09001 * 109.47194 * 119.99748 * 2 1 3 25 25 H 0.96996 * 120.00012 * 0.02562 * 5 4 3 26 26 H 1.09000 * 109.47050 * 299.99945 * 8 6 5 27 27 H 1.09001 * 109.46801 * 60.00058 * 8 6 5 28 28 H 1.09001 * 109.46998 * 179.97438 * 8 6 5 29 29 H 0.96999 * 120.00239 * 180.02562 * 12 11 9 30 30 H 1.09001 * 115.54853 * 29.33077 * 17 3 2 31 31 H 1.09004 * 117.49439 * 359.97438 * 18 17 3 32 32 H 1.08994 * 117.49811 * 145.01774 * 18 17 3 33 33 H 1.09005 * 117.49391 * 214.98153 * 19 17 3 34 34 H 1.08999 * 117.50017 * 359.97403 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2456 2.0243 1.1086 5 7 2.0117 1.3640 2.3219 6 6 2.2553 2.0549 3.5906 7 1 2.0883 3.1241 3.4601 8 6 3.7002 1.8146 4.0328 9 6 1.3137 1.5238 4.6406 10 1 0.6045 0.7496 4.3881 11 6 1.3578 2.0265 5.9237 12 7 2.2212 2.9698 6.2312 13 14 0.1902 1.3688 7.2250 14 1 -0.6757 0.3201 6.6287 15 1 0.9735 0.7861 8.3439 16 1 -0.6552 2.4771 7.7372 17 6 2.2834 2.1313 -1.3052 18 6 3.7216 2.5513 -1.6155 19 6 2.6800 3.6076 -1.2410 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6884 0.4496 2.3219 26 1 3.8672 0.7454 4.1634 27 1 4.3812 2.1987 3.2733 28 1 3.8817 2.3290 4.9766 29 1 2.2524 3.3232 7.1340 30 1 1.6601 1.8134 -2.1410 31 1 4.4859 2.3142 -0.8754 32 1 4.0447 2.5097 -2.6556 33 1 2.3178 4.2609 -2.0348 34 1 2.7588 4.0652 -0.2548 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379357090.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:19 Heat of formation + Delta-G solvation = 52.682254 kcal Electronic energy + Delta-G solvation = -13900.728169 eV Core-core repulsion = 11642.011195 eV Total energy + Delta-G solvation = -2258.716973 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.19707 -35.82844 -34.08627 -32.08217 -30.46914 -27.27653 -25.20403 -24.05404 -22.35717 -21.94267 -20.25295 -18.51548 -16.59406 -15.73128 -15.39615 -14.81285 -14.24115 -13.45323 -13.27708 -13.17033 -12.48633 -12.12319 -11.74164 -11.55822 -11.29590 -11.18060 -11.01507 -10.80852 -10.71826 -10.54366 -10.24743 -10.18268 -10.13359 -9.74103 -9.12290 -8.88010 -8.47455 -6.74512 -6.10004 -4.17635 2.94610 3.24858 3.32441 3.35918 3.96712 4.30962 4.41773 4.84844 5.20079 5.22226 5.33582 5.35479 5.53621 5.66288 5.72922 5.88481 6.02095 6.09822 6.15295 6.29254 6.45024 6.53976 6.62061 6.83642 7.05464 7.17993 7.24304 7.63753 7.86145 7.93716 8.24711 8.41891 8.92724 9.48897 9.55196 10.95943 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.039078 B = 0.007564 C = 0.006763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.352461 B = 3701.093033 C = 4139.086244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.102 4.102 3 C 0.019 3.981 4 N -0.209 5.209 5 N -0.636 5.636 6 C 0.299 3.701 7 H 0.038 0.962 8 C -0.150 4.150 9 C -0.527 4.527 10 H 0.059 0.941 11 C 0.065 3.935 12 N -0.887 5.887 13 Si 0.901 3.099 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.283 1.283 17 C -0.080 4.080 18 C -0.173 4.173 19 C -0.169 4.169 20 H 0.054 0.946 21 H 0.051 0.949 22 H 0.057 0.943 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.368 0.632 26 H 0.023 0.977 27 H 0.011 0.989 28 H 0.088 0.912 29 H 0.263 0.737 30 H 0.109 0.891 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.259 -3.186 -12.137 12.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.143 4.143 3 C -0.174 4.174 4 N -0.018 5.018 5 N -0.374 5.374 6 C 0.197 3.803 7 H 0.056 0.944 8 C -0.209 4.209 9 C -0.566 4.566 10 H 0.077 0.923 11 C -0.137 4.137 12 N -0.525 5.525 13 Si 0.729 3.271 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.100 4.100 18 C -0.212 4.212 19 C -0.207 4.207 20 H 0.073 0.927 21 H 0.070 0.930 22 H 0.076 0.924 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.205 0.795 26 H 0.043 0.957 27 H 0.030 0.970 28 H 0.107 0.893 29 H 0.073 0.927 30 H 0.127 0.873 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.141 -2.093 -11.363 11.555 hybrid contribution -0.959 -1.512 0.589 1.885 sum -0.819 -3.605 -10.774 11.391 Atomic orbital electron populations 1.21666 0.95109 1.01109 1.02295 1.20715 0.96246 0.95078 1.02220 1.23075 1.07982 0.94274 0.92059 1.73332 1.08945 1.26249 0.93322 1.48885 1.74150 1.14303 1.00091 1.18427 0.92019 0.93209 0.76661 0.94376 1.22204 0.97892 0.99168 1.01625 1.21295 1.18759 1.22111 0.94438 0.92308 1.24862 0.95744 0.94871 0.98237 1.69908 1.35323 1.27123 1.20136 0.86400 0.80650 0.78801 0.81298 1.19813 1.20877 1.20860 1.20473 0.98095 0.96811 0.94609 1.22970 0.92321 1.04385 1.01478 1.22929 1.02947 0.91317 1.03462 0.92694 0.92968 0.92393 0.91286 0.91748 0.79486 0.95732 0.97032 0.89347 0.92709 0.87275 0.88919 0.89196 0.89305 0.87614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.89 37.16 0.37 -1.62 16 2 C -0.10 -1.53 5.56 -27.88 -0.16 -1.68 16 3 C 0.02 0.33 6.13 -78.91 -0.48 -0.16 16 4 N -0.21 -4.38 10.46 35.60 0.37 -4.01 16 5 N -0.64 -14.54 5.93 -5.88 -0.03 -14.58 16 6 C 0.30 7.85 3.23 -69.08 -0.22 7.63 16 7 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 8 C -0.15 -3.80 9.29 37.16 0.35 -3.45 16 9 C -0.53 -14.48 8.74 -34.44 -0.30 -14.78 16 10 H 0.06 1.59 7.79 -52.49 -0.41 1.18 16 11 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 12 N -0.89 -25.16 11.32 55.43 0.63 -24.54 16 13 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 14 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 C -0.08 -1.12 6.11 -91.77 -0.56 -1.68 16 18 C -0.17 -2.25 10.23 -26.73 -0.27 -2.52 16 19 C -0.17 -2.35 10.02 -26.73 -0.27 -2.62 16 20 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 22 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 24 H 0.06 1.04 6.31 -51.93 -0.33 0.71 16 25 H 0.37 7.94 6.31 -182.60 -1.15 6.79 16 26 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.11 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.11 1.75 7.58 -51.93 -0.39 1.35 16 LS Contribution 285.00 15.07 4.29 4.29 Total: -1.00 -28.52 285.00 -7.79 -36.31 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -6.38 Total: 5.62 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -1.65 Total: -19.19 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: 0.96 Total: -43.12 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.52 -7.79 -36.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379357090.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.992 kcal (2) G-P(sol) polarization free energy of solvation -28.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds