Wall clock time and date at job start Mon Mar 30 2020 02:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50705 * 109.46925 * 2 1 4 4 N 1.28007 * 120.00163 * 90.00171 * 3 2 1 5 5 N 1.40105 * 119.99905 * 359.97438 * 4 3 2 6 6 C 1.46500 * 119.99963 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.47175 * 30.00242 * 6 5 4 8 8 C 1.53006 * 109.46998 * 270.00373 * 6 5 4 9 9 C 1.50697 * 109.46896 * 150.00444 * 6 5 4 10 10 H 1.07994 * 120.00496 * 359.97438 * 9 6 5 11 11 C 1.37878 * 119.99687 * 179.97438 * 9 6 5 12 12 N 1.31518 * 120.00216 * 0.02562 * 11 9 6 13 13 Si 1.86797 * 120.00016 * 179.97438 * 11 9 6 14 14 H 1.48500 * 109.47172 * 0.02562 * 13 11 9 15 15 H 1.48493 * 109.47304 * 120.00302 * 13 11 9 16 16 H 1.48502 * 109.47432 * 240.00422 * 13 11 9 17 17 C 1.50704 * 119.99838 * 269.99796 * 3 2 1 18 18 C 1.53005 * 117.49868 * 243.62444 * 17 3 2 19 19 C 1.53000 * 117.49764 * 175.00368 * 17 3 2 20 20 H 1.09001 * 109.47194 * 60.00252 * 1 2 3 21 21 H 1.09004 * 109.47478 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47178 * 299.99999 * 1 2 3 23 23 H 1.09002 * 109.47178 * 240.00001 * 2 1 3 24 24 H 1.09001 * 109.47194 * 119.99748 * 2 1 3 25 25 H 0.96996 * 120.00012 * 0.02562 * 5 4 3 26 26 H 1.09000 * 109.47050 * 299.99945 * 8 6 5 27 27 H 1.09001 * 109.46801 * 60.00058 * 8 6 5 28 28 H 1.09001 * 109.46998 * 179.97438 * 8 6 5 29 29 H 0.96999 * 120.00239 * 180.02562 * 12 11 9 30 30 H 1.09001 * 115.54853 * 29.33077 * 17 3 2 31 31 H 1.09004 * 117.49439 * 359.97438 * 18 17 3 32 32 H 1.08994 * 117.49811 * 145.01774 * 18 17 3 33 33 H 1.09005 * 117.49391 * 214.98153 * 19 17 3 34 34 H 1.08999 * 117.50017 * 359.97403 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2456 2.0243 1.1086 5 7 2.0117 1.3640 2.3219 6 6 2.2553 2.0549 3.5906 7 1 2.0883 3.1241 3.4601 8 6 3.7002 1.8146 4.0328 9 6 1.3137 1.5238 4.6406 10 1 0.6045 0.7496 4.3881 11 6 1.3578 2.0265 5.9237 12 7 2.2212 2.9698 6.2312 13 14 0.1902 1.3688 7.2250 14 1 -0.6757 0.3201 6.6287 15 1 0.9735 0.7861 8.3439 16 1 -0.6552 2.4771 7.7372 17 6 2.2834 2.1313 -1.3052 18 6 3.7216 2.5513 -1.6155 19 6 2.6800 3.6076 -1.2410 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6884 0.4496 2.3219 26 1 3.8672 0.7454 4.1634 27 1 4.3812 2.1987 3.2733 28 1 3.8817 2.3290 4.9766 29 1 2.2524 3.3232 7.1340 30 1 1.6601 1.8134 -2.1410 31 1 4.4859 2.3142 -0.8754 32 1 4.0447 2.5097 -2.6556 33 1 2.3178 4.2609 -2.0348 34 1 2.7588 4.0652 -0.2548 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379357090.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:19 Heat of formation + Delta-G solvation = 36.126345 kcal Electronic energy + Delta-G solvation = -13901.446087 eV Core-core repulsion = 11642.011195 eV Total energy + Delta-G solvation = -2259.434891 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.54284 -37.35689 -35.80255 -33.73829 -32.15644 -29.00397 -27.31485 -25.42854 -23.60309 -23.03595 -22.13389 -20.06977 -18.42045 -17.15964 -17.00516 -16.48716 -15.62923 -15.02575 -14.66367 -14.57933 -14.35153 -13.79259 -13.19829 -13.13851 -12.91100 -12.78902 -12.54265 -12.33424 -12.27263 -12.12866 -12.03116 -11.88340 -11.28919 -11.22801 -10.98130 -10.58415 -10.41385 -8.45685 -8.17960 -6.35585 1.40415 1.40896 1.53071 1.55463 2.27173 2.52572 3.09674 3.18254 3.65221 4.06052 4.22227 4.23122 4.39129 4.44619 4.52212 4.74201 4.87918 4.90263 4.95948 4.99034 5.02692 5.10570 5.14725 5.34309 5.36239 5.42485 5.47120 5.60912 5.82948 5.93300 6.26034 6.47527 6.88791 7.36812 7.96778 8.86842 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.039078 B = 0.007564 C = 0.006763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.352461 B = 3701.093033 C = 4139.086244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 C 0.048 3.952 4 N -0.262 5.262 5 N -0.652 5.652 6 C 0.310 3.690 7 H -0.005 1.005 8 C -0.134 4.134 9 C -0.546 4.546 10 H 0.058 0.942 11 C 0.017 3.983 12 N -0.916 5.916 13 Si 0.971 3.029 14 H -0.267 1.267 15 H -0.275 1.275 16 H -0.279 1.279 17 C -0.091 4.091 18 C -0.156 4.156 19 C -0.177 4.177 20 H 0.072 0.928 21 H 0.074 0.926 22 H 0.024 0.976 23 H 0.103 0.897 24 H 0.048 0.952 25 H 0.370 0.630 26 H 0.027 0.973 27 H 0.014 0.986 28 H 0.067 0.933 29 H 0.267 0.733 30 H 0.147 0.853 31 H 0.071 0.929 32 H 0.127 0.873 33 H 0.118 0.882 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.987 -4.416 -14.104 14.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.146 4.146 3 C -0.146 4.146 4 N -0.069 5.069 5 N -0.390 5.390 6 C 0.206 3.794 7 H 0.013 0.987 8 C -0.194 4.194 9 C -0.585 4.585 10 H 0.076 0.924 11 C -0.183 4.183 12 N -0.554 5.554 13 Si 0.795 3.205 14 H -0.192 1.192 15 H -0.200 1.200 16 H -0.204 1.204 17 C -0.111 4.111 18 C -0.194 4.194 19 C -0.214 4.214 20 H 0.091 0.909 21 H 0.093 0.907 22 H 0.044 0.956 23 H 0.121 0.879 24 H 0.067 0.933 25 H 0.208 0.792 26 H 0.046 0.954 27 H 0.033 0.967 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.164 0.836 31 H 0.089 0.911 32 H 0.145 0.855 33 H 0.136 0.864 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.583 -3.328 -13.347 13.768 hybrid contribution -0.712 -1.121 0.994 1.659 sum -1.296 -4.449 -12.353 13.193 Atomic orbital electron populations 1.21613 0.93986 1.02434 1.01534 1.20837 0.97104 0.93568 1.03089 1.24022 1.02966 0.95314 0.92304 1.73414 1.12723 1.27222 0.93557 1.48383 1.76292 1.14259 1.00078 1.17997 0.92097 0.90951 0.78361 0.98743 1.22012 0.97873 0.98926 1.00541 1.21553 1.19235 1.22381 0.95298 0.92427 1.25732 0.97273 0.94951 1.00300 1.70031 1.36598 1.28002 1.20782 0.85322 0.78506 0.78248 0.78401 1.19167 1.20040 1.20441 1.20810 0.99879 0.96658 0.93802 1.23006 0.90896 1.02624 1.02923 1.22929 1.04078 0.91694 1.02721 0.90879 0.90687 0.95643 0.87889 0.93297 0.79162 0.95358 0.96683 0.91385 0.92422 0.83585 0.91074 0.85479 0.86375 0.91177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 9.89 71.98 0.71 -2.80 16 2 C -0.11 -2.93 5.56 29.85 0.17 -2.77 16 3 C 0.05 1.58 6.13 46.53 0.29 1.87 16 4 N -0.26 -11.24 10.46 -41.19 -0.43 -11.67 16 5 N -0.65 -30.92 5.93 -172.52 -1.02 -31.94 16 6 C 0.31 17.05 3.23 44.25 0.14 17.19 16 7 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 8 C -0.13 -7.08 9.29 71.98 0.67 -6.41 16 9 C -0.55 -30.88 8.74 25.60 0.22 -30.65 16 10 H 0.06 3.19 7.79 -2.91 -0.02 3.17 16 11 C 0.02 0.97 5.30 84.65 0.45 1.42 16 12 N -0.92 -53.29 11.32 21.45 0.24 -53.05 16 13 Si 0.97 43.61 29.54 68.60 2.03 45.64 16 14 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 15 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 16 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 17 C -0.09 -2.30 6.11 -11.54 -0.07 -2.38 16 18 C -0.16 -3.62 10.23 30.60 0.31 -3.31 16 19 C -0.18 -4.62 10.02 30.59 0.31 -4.31 16 20 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 21 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 22 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.10 2.19 8.12 -2.39 -0.02 2.17 16 24 H 0.05 1.53 6.31 -2.39 -0.02 1.52 16 25 H 0.37 16.51 6.31 -213.32 -1.35 15.16 16 26 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 3.85 6.07 -2.39 -0.01 3.83 16 29 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 30 H 0.15 2.68 8.14 -2.39 -0.02 2.66 16 31 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 32 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.12 2.38 8.14 -2.38 -0.02 2.36 16 34 H 0.07 2.37 7.58 -2.39 -0.02 2.35 16 Total: -1.00 -64.00 285.00 3.73 -60.27 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: -0.28 Total: 22.90 kcal Atomic # 6 Polarization: -35.34 SS G_CDS: 3.20 Total: -32.14 kcal Atomic # 7 Polarization: -95.45 SS G_CDS: -1.21 Total: -96.66 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -64.00 3.73 -60.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379357090.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.398 kcal (2) G-P(sol) polarization free energy of solvation -64.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds